IslandPathversion 1.0

IslandPath Analysis: Actinobacillus succinogenes 130Z



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.47 STD DEV: 4.33
Actinobacillus succinogenes 130Z, complete genome - 1..2319663
2079 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
902	 46.93	0	984205..985197	-	330	152978590	-	Asuc_0916	-	polyprenyl synthetase
903	 44.55	0	985428..985739	+	103	152978591	-	Asuc_0917	-	50S ribosomal protein L21
904	 44.19	0	985760..986017	+	85	152978592	-	Asuc_0918	-	50S ribosomal protein L27
905	 36.90	-1	986106..987029	+	307	152978593	-	Asuc_0919	-	hypothetical protein
906	 48.55	0	987032..988207	+	391	152978594	-	Asuc_0920	-	GTPase ObgE
907	 38.26	-1	988261..988605	-	114	152978595	-	Asuc_0921	-	hypothetical protein
908	 46.65	0	988796..989884	+	362	152978596	-	Asuc_0922	-	phosphoserine aminotransferase
909	 43.05	0	989978..991078	+	366	152978597	-	Asuc_0923	-	histidinol-phosphate aminotransferase
910	 48.00	0	991181..992482	+	433	152978598	-	Asuc_0924	-	3-phosphoshikimate 1-carboxyvinyltransferase
911	 48.26	0	992612..993964	+	450	152978599	-	Asuc_0925	-	aspartate kinase III
912	 39.60	-1	994076..994681	+	201	152978600	-	Asuc_0926	-	hypothetical protein
913	 42.50	0	994665..995177	+	170	152978601	-	Asuc_0927	-	cell envelope biogenesis YhbN
914	 45.73	0	995189..995914	+	241	152978602	-	Asuc_0928	-	ABC transporter related
915	 43.39	0	995918..996424	+	168	152978603	-	Asuc_0929	-	PTS IIA-like nitrogen-regulatory protein PtsN
916	 42.59	0	996442..997305	+	287	152978604	-	Asuc_0930	-	hypothetical protein
917	 48.92	0	997490..998740	+	416	152978605	-	Asuc_0931	-	gamma-glutamyl phosphate reductase
918	 43.38	0	998949..999356	-	135	152978606	-	Asuc_0932	-	DNA polymerase III subunit psi
919	 47.21	0	999418..1000419	+	333	152978607	-	Asuc_0933	-	16S ribosomal RNA m2G1207 methyltransferase
920	 46.15	0	1000528..1001736	-	402	152978608	-	Asuc_0934	-	mannose-6-phosphate isomerase, class I
921	 39.07	-1	1001747..1002199	-	150	152978609	-	Asuc_0935	-	hypothetical protein
922	 44.21	0	1002269..1003105	-	278	152978610	-	Asuc_0936	-	mannose-specific PTS system protein IID
923	 47.07	0	1003119..1003919	-	266	152978611	-	Asuc_0937	-	PTS system mannose/fructose/sorbose family IIC subunit
924	 46.13	0	1003931..1004899	-	322	152978612	-	Asuc_0938	-	PTS system mannose/fructose/sorbose family IIB subunit
925	 50.00	+1	1005164..1005367	+	67	152978613	-	Asuc_0939	-	17 kDa surface antigen
926	 46.50	0	1005485..1006798	+	437	152978614	-	Asuc_0940	-	xanthine/uracil/vitamin C permease
927	 40.96	-1	1006817..1007314	+	165	152978615	-	Asuc_0941	-	hypothetical protein
928	 45.51	0	1007622..1010282	+	886	152978616	-	Asuc_0942	-	pyruvate dehydrogenase subunit E1
929	 48.94	0	1010343..1012226	+	627	152978617	-	Asuc_0943	-	dihydrolipoamide acetyltransferase
930	 47.23	0	1012284..1013708	+	474	152978618	-	Asuc_0944	-	dihydrolipoamide dehydrogenase
931	 39.38	-1	1013882..1014493	+	203	152978619	-	Asuc_0945	-	NLP/P60 protein
932	 39.04	-1	1014618..1015055	-	145	152978620	-	Asuc_0946	-	putative prophage repressor
933	 44.66	0	1015308..1016552	+	414	152978621	-	Asuc_0947	-	serine/threonine transporter SstT
934	 45.09	0	1016614..1018059	+	481	152978622	-	Asuc_0948	-	putative molybdenum transport ATP-binding protein ModF
935	 47.39	0	1018105..1019022	+	305	152978623	-	Asuc_0949	-	band 7 protein
936	 46.98	0	1019032..1019478	+	148	152978624	-	Asuc_0950	-	hypothetical protein
937	 46.15	0	1019482..1020066	+	194	152978625	-	Asuc_0951	-	NAD(P)H dehydrogenase (quinone)
938	 47.49	0	1020171..1021625	-	484	152978626	-	Asuc_0952	-	leucyl aminopeptidase
939	 44.08	0	1021773..1022879	+	368	152978627	-	Asuc_0953	-	permease YjgP/YjgQ family protein
940	 44.60	0	1022883..1023947	+	354	152978628	-	Asuc_0954	-	permease YjgP/YjgQ family protein
941	 41.42	0	1024377..1024982	-	201	152978629	-	Asuc_0955	-	hypothetical protein
942	 42.94	0	1025082..1026476	-	464	152978630	-	Asuc_0956	-	fumarate hydratase
943	 44.69	0	1026634..1027716	+	360	152978631	-	Asuc_0957	-	hypothetical protein
944	 43.59	0	1027791..1028765	+	324	152978632	-	Asuc_0958	-	sigma-54 factor interaction domain-containing protein
945	 38.62	-1	1028814..1029248	-	144	152978633	-	Asuc_0959	-	ferric uptake regulator family protein
946	 43.43	0	1029258..1029782	-	174	152978634	-	Asuc_0960	-	flavodoxin FldA
947	 40.59	-1	1029817..1030119	-	100	152978635	-	Asuc_0961	-	hypothetical protein
948	 46.49	0	1030198..1030995	-	265	152978636	-	Asuc_0962	-	alpha/beta hydrolase fold
949	 46.17	0	1031071..1031709	+	212	152978637	-	Asuc_0963	-	replication initiation regulator SeqA
950	 46.79	0	1031724..1033142	+	472	152978638	-	Asuc_0964	-	O-succinylbenzoic acid--CoA ligase
951	 41.69	0	1033133..1036483	+	1116	152978639	-	Asuc_0965	-	potassium efflux protein KefA
952	 48.85	0	1036496..1037578	+	360	152978640	-	Asuc_0966	-	chorismate synthase
953	 49.88	+1	1037662..1038519	+	285	152978641	-	Asuc_0967	-	penicillin-insensitive murein endopeptidase
954	 43.40	0	1038548..1039312	+	254	152978642	-	Asuc_0968	-	hypothetical protein
955	 47.59	0	1039312..1040265	+	317	152978643	-	Asuc_0969	-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase
956	 44.75	0	1040332..1040874	+	180	152978644	-	Asuc_0970	-	adenine phosphoribosyltransferase
957	 47.19	0	1040899..1042998	+	699	152978645	-	Asuc_0971	-	DNA polymerase III subunits gamma and tau
958	 39.38	-1	1043291..1044133	-	280	152978646	-	Asuc_0972	-	transcriptional antiterminator, BglG
959	 44.63	0	1044204..1045673	-	489	152978647	-	Asuc_0973	-	glycoside hydrolase family protein
960	 45.82	0	1045867..1046691	-	274	152978648	-	Asuc_0974	-	Cof-like hydrolase
961	 46.44	0	1046768..1048651	-	627	152978649	-	Asuc_0975	-	PTS system, beta-glucoside-specific IIABC subunit
962	 45.45	0	1049352..1050077	+	241	152978650	-	Asuc_0976	-	hypothetical protein
963	 48.56	0	1050128..1052380	-	750	152978651	-	Asuc_0977	-	DNA topoisomerase IV subunit A
964	 47.71	0	1052782..1053894	-	370	152978652	-	Asuc_0978	-	nitrite reductase, copper-containing
965	 49.58	0	1053933..1055858	-	641	152978653	-	Asuc_0979	-	DNA topoisomerase IV subunit B
966	 49.61	0	1055967..1057649	-	560	152978654	-	Asuc_0980	-	putative ABC transporter ATP-binding protein
967	 48.07	0	1058008..1059378	-	456	152978655	-	Asuc_0981	-	peptidase U32
968	 50.22	+1	1059586..1061166	-	526	152978656	-	Asuc_0982	-	peptide chain release factor 3
969	 47.04	0	1061405..1062265	+	286	152978657	-	Asuc_0983	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
970	 49.13	0	1062328..1063131	+	267	152978658	-	Asuc_0984	-	hypothetical protein
971	 46.59	0	1063215..1064549	+	444	152978659	-	Asuc_0985	-	argininosuccinate synthase
972	 48.26	0	1064613..1065932	-	439	152978660	-	Asuc_0986	-	small GTP-binding protein
973	 41.00	-1	1065965..1066264	-	99	152978661	-	Asuc_0987	-	RNA chaperone Hfq
974	 47.02	0	1066344..1067300	-	318	152978662	-	Asuc_0988	-	tRNA delta(2)-isopentenylpyrophosphate transferase
975	 46.03	0	1067303..1069216	-	637	152978663	-	Asuc_0989	-	DNA mismatch repair protein
976	 44.02	0	1069219..1070940	-	573	152978664	-	Asuc_0990	-	N-acetylmuramoyl-L-alanine amidase
977	 46.25	0	1070944..1071423	-	159	152978665	-	Asuc_0991	-	hypothetical protein
978	 46.08	0	1071794..1072342	-	182	152978666	-	Asuc_0992	-	oligoribonuclease
979	 46.51	0	1072406..1073452	+	348	152978667	-	Asuc_0993	-	ribosome-associated GTPase
980	 41.47	0	1073724..1073981	+	85	152978668	-	Asuc_0994	-	phosphotransferase system, phosphocarrier protein HPr
981	 43.69	0	1074087..1075814	+	575	152978669	-	Asuc_0995	-	phosphoenolpyruvate-protein phosphotransferase
982	 39.92	-1	1075878..1076378	+	166	152978670	-	Asuc_0996	-	glucose-specific PTS system component
983	 45.76	0	1076500..1076829	+	109	152978671	-	Asuc_0997	-	hypothetical protein
984	 50.41	+1	1076962..1077564	+	200	152978672	-	Asuc_0998	-	recombination protein RecR
985	 47.67	0	1077568..1078125	+	185	152978673	-	Asuc_0999	-	TorD protein
986	 44.76	0	1078171..1080297	-	708	152978674	-	Asuc_1000	-	hypothetical protein
987	 44.74	0	1080290..1080745	-	151	152978675	-	Asuc_1001	-	hypothetical protein
988	 46.00	0	1080883..1081545	-	220	152978676	-	Asuc_1002	-	hypothetical protein
989	 52.38	+1	1081690..1081962	+	90	152978677	-	Asuc_1003	-	acylphosphatase
990	 46.67	0	1082078..1082407	-	109	152978678	-	Asuc_1004	-	DsrC family protein
991	 45.68	0	1082477..1083148	-	223	152978679	-	Asuc_1005	-	hypothetical protein
992	 44.32	0	1085469..1093241	+	2590	152978680	-	Asuc_1007	-	filamentous haemagglutinin outer membrane protein
993	 25.33	-2	1094867..1095166	+	99	152978681	-	Asuc_1009	-	hypothetical protein
994	 46.91	0	1095290..1097476	+	728	152978682	-	Asuc_1010	-	hypothetical protein
995	 28.04	-2	1097476..1097985	+	169	152978683	-	Asuc_1011	-	hypothetical protein
996	 54.45	+2	1098315..1098797	+	160	152978684	-	Asuc_1012	-	FhaB protein
997	 43.41	0	1098993..1099250	+	85	152978685	-	Asuc_1013	-	FeoA family protein
998	 47.54	0	1099325..1101196	+	623	152978686	-	Asuc_1014	-	ferrous iron transport protein B
999	 42.36	0	1101198..1101341	+	47	152978687	-	Asuc_1015	-	hypothetical protein
1000	 47.70	0	1101439..1102155	-	238	152978688	-	Asuc_1016	-	sugar fermentation stimulation protein A
1001	 45.90	0	1102290..1104311	-	673	152978689	-	Asuc_1017	-	TonB-dependent siderophore receptor
45.47	MEAN

4.33	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.