IslandPath Analysis: Actinobacillus succinogenes 130Z



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.47   STD DEV: 4.33
Actinobacillus succinogenes 130Z, complete genome - 1..2319663
2079 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
853	 46.09	0	929875..930258	+	127	152978541	-	Asuc_0865	-	scaffold protein
854	 41.05	-1	930324..930647	+	107	152978542	-	Asuc_0866	-	iron-sulfur cluster assembly protein IscA
855	 43.18	0	930660..931187	+	175	152978543	-	Asuc_0867	-	co-chaperone HscB
856	 50.51	+1	931194..933038	+	614	152978544	-	Asuc_0868	-	chaperone protein HscA
857	 46.78	0	933055..933396	+	113	152978545	-	Asuc_0869	-	ferredoxin, 2Fe-2S type, ISC system
858	 43.08	0	933396..933590	+	64	152978546	-	Asuc_0870	-	hypothetical protein
859	 44.29	0	933705..934343	+	212	152978547	-	Asuc_0871	-	uridine kinase
860	 47.35	0	934345..934929	+	194	152978548	-	Asuc_0872	-	deoxycytidine triphosphate deaminase
861	 43.19	0	934932..936281	+	449	152978549	-	Asuc_0873	-	hypothetical protein
862	 44.97	0	936563..938074	-	503	152978550	-	Asuc_0874	-	GTP-binding protein EngA
863	 42.05	0	938452..939231	-	259	152978551	-	Asuc_0875	-	DNA polymerase III subunit epsilon
864	 41.51	0	939303..939767	+	154	152978552	-	Asuc_0876	-	ribonuclease H
865	 45.02	0	939955..940587	-	210	152978553	-	Asuc_0877	-	LexA repressor
866	 44.93	0	940713..941195	-	160	152978554	-	Asuc_0878	-	SsrA-binding protein
867	 45.34	0	941325..942032	-	235	152978555	-	Asuc_0879	-	two-component response regulator
868	 48.42	0	942217..942501	-	94	152978556	-	Asuc_0880	-	YCII-related
869	 43.92	0	942528..942971	-	147	152978557	-	Asuc_0881	-	thioesterase superfamily protein
870	 39.48	-1	942974..943510	-	178	152978558	-	Asuc_0882	-	intracellular septation protein A
871	 40.83	-1	943512..944285	-	257	152978559	-	Asuc_0883	-	hypothetical protein
872	 43.05	0	944471..946147	-	558	152978560	-	Asuc_0884	-	DNA repair protein RecN
873	 44.96	0	946222..947133	-	303	152978561	-	Asuc_0885	-	inorganic polyphosphate/ATP-NAD kinase
874	 45.83	0	947259..947858	+	199	152978562	-	Asuc_0886	-	GrpE protein
875	 49.63	0	947927..949963	-	678	152978563	-	Asuc_0887	-	5-methylaminomethyl-2-thiouridine methyltransferase
876	 48.24	0	950129..951349	+	406	152978564	-	Asuc_0888	-	3-oxoacyl-(acyl carrier protein) synthase I
877	 47.42	0	951519..952895	-	458	152978565	-	Asuc_0889	-	gluconate transporter
878	 48.35	0	953051..955081	-	676	152978566	-	Asuc_0890	-	23S rRNA m(2)G2445 methyltransferase
879	 47.17	0	955313..956635	+	440	152978567	-	Asuc_0891	-	N-acetylglutamate synthase
880	 49.04	0	956710..957651	-	313	152978568	-	Asuc_0892	-	biotin--protein ligase
881	 49.97	+1	957808..959274	+	488	152978569	-	Asuc_0893	-	inositol-5-monophosphate dehydrogenase
882	 39.41	-1	959384..960271	+	295	152978570	-	Asuc_0894	-	hypothetical protein
883	 37.34	-1	960358..960756	+	132	152978571	-	Asuc_0895	-	glutathione-dependent formaldehyde-activating GFA
884	 48.60	0	960801..962372	+	523	152978572	-	Asuc_0896	-	bifunctional GMP synthase/glutamine amidotransferase protein
885	 38.62	-1	962664..963287	+	207	152978573	-	Asuc_0897	-	cytochrome c-type protein
886	 45.28	0	963299..965776	+	825	152978574	-	Asuc_0898	-	trimethylamine-N-oxide reductase TorA
887	 38.32	-1	965773..966354	+	193	152978575	-	Asuc_0899	-	chaperone protein TorD
888	 41.02	-1	966464..967582	+	372	152978576	-	Asuc_0900	-	periplasmic binding protein
889	 42.64	0	967663..967995	-	110	152978577	-	Asuc_0901	-	MazG nucleotide pyrophosphohydrolase
890	 42.39	0	968778..969881	+	367	152978578	-	Asuc_0903	-	periplasmic binding protein
891	 44.26	0	969881..970942	+	353	152978579	-	Asuc_0904	-	transport system permease protein
892	 40.21	-1	970942..971712	+	256	152978580	-	Asuc_0905	-	ABC transporter related
893	 42.59	0	971733..972164	+	143	152978581	-	Asuc_0906	-	pseudoazurin
894	 41.43	0	972228..973055	+	275	152978582	-	Asuc_0907	-	hypothetical protein
895	 47.62	0	973916..974881	-	321	152978583	-	Asuc_0909	-	putative methyltransferase
896	 48.78	0	974878..976392	-	504	152978584	-	Asuc_0910	-	sodium/proline symporter
897	 45.57	0	976647..978125	+	492	152978585	-	Asuc_0911	-	ribonuclease G
898	 51.00	+1	978271..979719	+	482	152978586	-	Asuc_0912	-	peptidase U62 modulator of DNA gyrase
899	 47.75	0	980162..981361	+	399	152978587	-	Asuc_0913	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
900	 48.73	0	981856..983271	+	471	152978588	-	Asuc_0914	-	PTS system, sucrose-specific IIBC subunit
901	 45.77	0	983353..984156	-	267	152978589	-	Asuc_0915	-	hypothetical protein
902	 46.93	0	984205..985197	-	330	152978590	-	Asuc_0916	-	polyprenyl synthetase
903	 44.55	0	985428..985739	+	103	152978591	-	Asuc_0917	-	50S ribosomal protein L21
904	 44.19	0	985760..986017	+	85	152978592	-	Asuc_0918	-	50S ribosomal protein L27
905	 36.90	-1	986106..987029	+	307	152978593	-	Asuc_0919	-	hypothetical protein
906	 48.55	0	987032..988207	+	391	152978594	-	Asuc_0920	-	GTPase ObgE
907	 38.26	-1	988261..988605	-	114	152978595	-	Asuc_0921	-	hypothetical protein
908	 46.65	0	988796..989884	+	362	152978596	-	Asuc_0922	-	phosphoserine aminotransferase
909	 43.05	0	989978..991078	+	366	152978597	-	Asuc_0923	-	histidinol-phosphate aminotransferase
910	 48.00	0	991181..992482	+	433	152978598	-	Asuc_0924	-	3-phosphoshikimate 1-carboxyvinyltransferase
911	 48.26	0	992612..993964	+	450	152978599	-	Asuc_0925	-	aspartate kinase III
912	 39.60	-1	994076..994681	+	201	152978600	-	Asuc_0926	-	hypothetical protein
913	 42.50	0	994665..995177	+	170	152978601	-	Asuc_0927	-	cell envelope biogenesis YhbN
914	 45.73	0	995189..995914	+	241	152978602	-	Asuc_0928	-	ABC transporter related
915	 43.39	0	995918..996424	+	168	152978603	-	Asuc_0929	-	PTS IIA-like nitrogen-regulatory protein PtsN
916	 42.59	0	996442..997305	+	287	152978604	-	Asuc_0930	-	hypothetical protein
917	 48.92	0	997490..998740	+	416	152978605	-	Asuc_0931	-	gamma-glutamyl phosphate reductase
918	 43.38	0	998949..999356	-	135	152978606	-	Asuc_0932	-	DNA polymerase III subunit psi
919	 47.21	0	999418..1000419	+	333	152978607	-	Asuc_0933	-	16S ribosomal RNA m2G1207 methyltransferase
920	 46.15	0	1000528..1001736	-	402	152978608	-	Asuc_0934	-	mannose-6-phosphate isomerase, class I
921	 39.07	-1	1001747..1002199	-	150	152978609	-	Asuc_0935	-	hypothetical protein
922	 44.21	0	1002269..1003105	-	278	152978610	-	Asuc_0936	-	mannose-specific PTS system protein IID
923	 47.07	0	1003119..1003919	-	266	152978611	-	Asuc_0937	-	PTS system mannose/fructose/sorbose family IIC subunit
924	 46.13	0	1003931..1004899	-	322	152978612	-	Asuc_0938	-	PTS system mannose/fructose/sorbose family IIB subunit
925	 50.00	+1	1005164..1005367	+	67	152978613	-	Asuc_0939	-	17 kDa surface antigen
926	 46.50	0	1005485..1006798	+	437	152978614	-	Asuc_0940	-	xanthine/uracil/vitamin C permease
927	 40.96	-1	1006817..1007314	+	165	152978615	-	Asuc_0941	-	hypothetical protein
928	 45.51	0	1007622..1010282	+	886	152978616	-	Asuc_0942	-	pyruvate dehydrogenase subunit E1
929	 48.94	0	1010343..1012226	+	627	152978617	-	Asuc_0943	-	dihydrolipoamide acetyltransferase
930	 47.23	0	1012284..1013708	+	474	152978618	-	Asuc_0944	-	dihydrolipoamide dehydrogenase
931	 39.38	-1	1013882..1014493	+	203	152978619	-	Asuc_0945	-	NLP/P60 protein
932	 39.04	-1	1014618..1015055	-	145	152978620	-	Asuc_0946	-	putative prophage repressor
933	 44.66	0	1015308..1016552	+	414	152978621	-	Asuc_0947	-	serine/threonine transporter SstT
934	 45.09	0	1016614..1018059	+	481	152978622	-	Asuc_0948	-	putative molybdenum transport ATP-binding protein ModF
935	 47.39	0	1018105..1019022	+	305	152978623	-	Asuc_0949	-	band 7 protein
936	 46.98	0	1019032..1019478	+	148	152978624	-	Asuc_0950	-	hypothetical protein
937	 46.15	0	1019482..1020066	+	194	152978625	-	Asuc_0951	-	NAD(P)H dehydrogenase (quinone)
938	 47.49	0	1020171..1021625	-	484	152978626	-	Asuc_0952	-	leucyl aminopeptidase
939	 44.08	0	1021773..1022879	+	368	152978627	-	Asuc_0953	-	permease YjgP/YjgQ family protein
940	 44.60	0	1022883..1023947	+	354	152978628	-	Asuc_0954	-	permease YjgP/YjgQ family protein
941	 41.42	0	1024377..1024982	-	201	152978629	-	Asuc_0955	-	hypothetical protein
942	 42.94	0	1025082..1026476	-	464	152978630	-	Asuc_0956	-	fumarate hydratase
943	 44.69	0	1026634..1027716	+	360	152978631	-	Asuc_0957	-	hypothetical protein
944	 43.59	0	1027791..1028765	+	324	152978632	-	Asuc_0958	-	sigma-54 factor interaction domain-containing protein
945	 38.62	-1	1028814..1029248	-	144	152978633	-	Asuc_0959	-	ferric uptake regulator family protein
946	 43.43	0	1029258..1029782	-	174	152978634	-	Asuc_0960	-	flavodoxin FldA
947	 40.59	-1	1029817..1030119	-	100	152978635	-	Asuc_0961	-	hypothetical protein
948	 46.49	0	1030198..1030995	-	265	152978636	-	Asuc_0962	-	alpha/beta hydrolase fold
949	 46.17	0	1031071..1031709	+	212	152978637	-	Asuc_0963	-	replication initiation regulator SeqA
950	 46.79	0	1031724..1033142	+	472	152978638	-	Asuc_0964	-	O-succinylbenzoic acid--CoA ligase
951	 41.69	0	1033133..1036483	+	1116	152978639	-	Asuc_0965	-	potassium efflux protein KefA
952	 48.85	0	1036496..1037578	+	360	152978640	-	Asuc_0966	-	chorismate synthase
45.47	MEAN

4.33	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.