IslandPath Analysis: Actinobacillus succinogenes 130Z



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.47   STD DEV: 4.33
Actinobacillus succinogenes 130Z, complete genome - 1..2319663
2079 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
42	 43.90	0	57632..58123	-	163	152977730	-	Asuc_0043	-	50S ribosomal protein L10
43	 43.48	0	58416..59105	-	229	152977731	-	Asuc_0044	-	ribosomal protein L1
44	 43.82	0	59110..59538	-	142	152977732	-	Asuc_0045	-	50S ribosomal protein L11
45	 32.02	-2	59773..60534	-	253	152977733	-	Asuc_0046	-	hypothetical protein
46	 46.24	0	60767..61324	-	185	152977734	-	Asuc_0047	-	transcription antitermination protein NusG
47	 40.88	-1	61326..61736	-	136	152977735	-	Asuc_0048	-	preprotein translocase subunit SecE
48	 44.37	0	61897..62784	-	295	152977736	-	Asuc_0049	-	UTP-glucose-1-phosphate uridylyltransferase
49	 44.40	0	62868..64232	-	454	152977737	-	Asuc_0050	-	phosphomannomutase
50	 41.40	0	64245..64430	-	61	152977738	-	Asuc_0051	-	carbon storage regulator
51	 46.48	0	64507..67131	-	874	152977739	-	Asuc_0052	-	alanyl-tRNA synthetase
52	 42.02	0	67295..67720	-	141	152977740	-	Asuc_0053	-	UspA domain-containing protein
53	 47.07	0	67958..68743	+	261	152977741	-	Asuc_0054	-	nucleoside triphosphate pyrophosphohydrolase
54	 44.19	0	68865..70034	-	389	152977742	-	Asuc_0055	-	UDP-glucose/GDP-mannose dehydrogenase
55	 44.46	0	70053..72371	-	772	152977743	-	Asuc_0056	-	hypothetical protein
56	 45.46	0	72391..74253	-	620	152977744	-	Asuc_0057	-	ABC transporter related
57	 47.12	0	74265..75446	-	393	152977745	-	Asuc_0058	-	glycosyl transferase group 1
58	 45.61	0	75462..76691	-	409	152977746	-	Asuc_0059	-	glycosyl transferase group 1
59	 44.70	0	76728..77915	-	395	152977747	-	Asuc_0060	-	hypothetical protein
60	 47.07	0	78106..79248	+	380	152977748	-	Asuc_0061	-	porin
61	 47.77	0	79311..80183	-	290	152977749	-	Asuc_0062	-	2,5-didehydrogluconate reductase
62	 52.14	+1	80339..81274	-	311	152977750	-	Asuc_0063	-	AraC family transcriptional regulator
63	 46.76	0	81435..82283	+	282	152977751	-	Asuc_0064	-	hypothetical protein
64	 45.45	0	82331..82957	-	208	152977752	-	Asuc_0065	-	HhH-GPD family protein
65	 50.12	+1	83452..84291	-	279	152977753	-	Asuc_0066	-	S-formylglutathione hydrolase
66	 51.39	+1	84293..85411	-	372	152977754	-	Asuc_0067	-	S-(hydroxymethyl)glutathione dehydrogenase
67	 41.83	0	85589..86047	-	152	152977755	-	Asuc_0068	-	hypothetical protein
68	 47.20	0	86366..87079	-	237	152977756	-	Asuc_0069	-	hypothetical protein
69	 41.72	0	87270..87698	-	142	152977757	-	Asuc_0070	-	hypothetical protein
70	 48.39	0	87695..88252	-	185	152977758	-	Asuc_0071	-	isoleucine patch superfamily acetyltransferase
71	 47.93	0	88495..89631	-	378	152977759	-	Asuc_0072	-	alpha/beta fold family hydrolase
72	 51.89	+1	89887..91206	+	439	152977760	-	Asuc_0073	-	recombination factor protein RarA
73	 50.90	+1	91356..92300	+	314	152977761	-	Asuc_0074	-	potassium-tellurite ethidium and proflavin transporter
74	 46.75	0	92335..92841	-	168	152977762	-	Asuc_0075	-	TetR family transcriptional regulator
75	 55.39	+2	92974..93177	+	67	152977763	-	Asuc_0076	-	17 kDa surface antigen
76	 53.52	+1	93402..93728	+	108	152977764	-	Asuc_0077	-	17 kDa surface antigen
77	 48.23	0	93914..94819	+	301	152977765	-	Asuc_0078	-	LysR family transcriptional regulator
78	 48.33	0	94844..96010	-	388	152977766	-	Asuc_0079	-	Bcr/CflA subfamily drug resistance transporter
79	 51.74	+1	96380..97270	+	296	152977767	-	Asuc_0080	-	LysR family transcriptional regulator
80	 46.07	0	97353..98294	-	313	152977768	-	Asuc_0081	-	monosaccharide-transporting ATPase
81	 45.70	0	98454..99941	+	495	152977769	-	Asuc_0082	-	ABC transporter related
82	 48.69	0	99958..100986	+	342	152977770	-	Asuc_0083	-	monosaccharide-transporting ATPase
83	 51.48	+1	100990..102444	+	484	152977771	-	Asuc_0084	-	carbohydrate kinase FGGY
84	 51.70	+1	102598..104274	-	558	152977772	-	Asuc_0085	-	PTS system, fructose subfamily, IIC subunit
85	 48.94	0	104279..105220	-	313	152977773	-	Asuc_0086	-	1-phosphofructokinase
86	 50.43	+1	105223..106725	-	500	152977774	-	Asuc_0087	-	bifunctional fructose-specific PTS IIA/HPr protein
87	 46.39	0	106802..107314	-	170	152977775	-	Asuc_0088	-	hypothetical protein
88	 49.11	0	107448..107783	+	111	152977776	-	Asuc_0089	-	rhodanese domain-containing protein
89	 44.25	0	107762..108100	-	112	152977777	-	Asuc_0090	-	hypothetical protein
90	 45.55	0	108121..108996	+	291	152977778	-	Asuc_0091	-	rhomboid family protein
91	 44.93	0	109027..109785	+	252	152977779	-	Asuc_0092	-	DeoR family transcriptional regulator
92	 48.95	0	110602..111786	-	394	152977780	-	Asuc_0094	-	elongation factor Tu
93	 42.35	0	112470..113423	+	317	152977781	-	Asuc_0095	-	pantothenate kinase
94	 44.89	0	113571..115682	-	703	152977782	-	Asuc_0096	-	non-specific protein-tyrosine kinase
95	 45.50	0	115865..117031	-	388	152977783	-	Asuc_0097	-	polysaccharide export protein
96	 43.35	0	117052..118977	-	641	152977784	-	Asuc_0098	-	polysaccharide biosynthesis protein CapD
97	 45.94	0	118992..120173	-	393	152977785	-	Asuc_0099	-	DegT/DnrJ/EryC1/StrS aminotransferase
98	 41.55	0	120207..120851	-	214	152977786	-	Asuc_0100	-	HAD family hydrolase
99	 44.51	0	120841..121806	-	321	152977787	-	Asuc_0101	-	putative carbamoyl phosphate synthase large subunit
100	 44.50	0	121803..122402	-	199	152977788	-	Asuc_0102	-	undecaprenyl-phosphate galactose phosphotransferase
101	 36.29	-2	122399..123685	-	428	152977789	-	Asuc_0103	-	O-antigen polymerase
102	 42.55	0	123687..124868	-	393	152977790	-	Asuc_0104	-	glycosyl transferase group 1
103	 41.06	-1	124858..126165	-	435	152977791	-	Asuc_0105	-	polysaccharide biosynthesis protein
104	 44.47	0	126170..127327	-	385	152977792	-	Asuc_0106	-	glycosyl transferase group 1
105	 44.66	0	127327..128430	-	367	152977793	-	Asuc_0107	-	glycosyl transferase group 1
106	 48.28	0	128441..129517	-	358	152977794	-	Asuc_0108	-	glutamine--scyllo-inositol transaminase
107	 51.22	+1	129531..130106	-	191	152977795	-	Asuc_0109	-	hexapaptide repeat-containing transferase
108	 45.22	0	130315..131265	-	316	152977796	-	Asuc_0110	-	oxidoreductase domain-containing protein
109	 46.53	0	131284..132579	-	431	152977797	-	Asuc_0111	-	UDP-glucose/GDP-mannose dehydrogenase
110	 45.65	0	133361..133912	+	183	152977798	-	Asuc_0112	-	peptide deformylase
111	 51.57	+1	134391..135344	+	317	152977799	-	Asuc_0113	-	methionyl-tRNA formyltransferase
112	 52.99	+1	135413..136801	+	462	152977800	-	Asuc_0114	-	sun protein
113	 51.71	+1	136957..138969	+	670	152977801	-	Asuc_0115	-	OPT family oligopeptide transporter
114	 39.73	-1	139095..140891	-	598	152977802	-	Asuc_0116	-	hypothetical protein
115	 38.72	-1	140919..141605	-	228	152977803	-	Asuc_0117	-	cyclase family protein
116	 41.54	0	141617..142957	-	446	152977804	-	Asuc_0118	-	phospholipase/carboxylesterase
117	 48.78	0	143015..144367	-	450	152977805	-	Asuc_0119	-	gluconate transporter
118	 45.05	0	144529..145305	-	258	152977806	-	Asuc_0120	-	hydroxypyruvate isomerase
119	 47.55	0	145308..145940	-	210	152977807	-	Asuc_0121	-	putative aldolase
120	 47.95	0	145937..147181	-	414	152977808	-	Asuc_0122	-	type III effector Hrp-dependent outers
121	 48.62	0	147181..148083	-	300	152977809	-	Asuc_0123	-	6-phosphogluconate dehydrogenase NAD-binding
122	 44.27	0	148268..149026	+	252	152977810	-	Asuc_0124	-	DeoR family transcriptional regulator
123	 48.10	0	149169..151145	+	658	152977811	-	Asuc_0125	-	bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein
124	 45.19	0	151333..152091	-	252	152977812	-	Asuc_0126	-	DeoR family transcriptional regulator
125	 47.68	0	152249..152701	-	150	152977813	-	Asuc_0127	-	PTS system, glucose subfamily, IIA subunit
126	 45.87	0	152713..154068	-	451	152977814	-	Asuc_0128	-	sugar (glycoside-Pentoside-hexuronide) transporter
127	 49.09	0	154164..155762	-	532	152977815	-	Asuc_0129	-	carbohydrate kinase FGGY
128	 47.18	0	155843..156622	-	259	152977816	-	Asuc_0130	-	short-chain dehydrogenase/reductase SDR
129	 45.67	0	156799..157917	+	372	152977817	-	Asuc_0131	-	ROK family protein
130	 48.28	0	158130..160565	+	811	152977818	-	Asuc_0132	-	DNA gyrase subunit B
131	 48.97	0	160885..161760	-	291	152977819	-	Asuc_0133	-	alpha/beta hydrolase fold
132	 41.99	0	161772..162002	-	76	152977820	-	Asuc_0134	-	4-oxalocrotonate tautomerase
133	 47.99	0	162024..162596	-	190	152977821	-	Asuc_0135	-	NADP oxidoreductase coenzyme F420-dependent
134	 47.55	0	162712..163590	+	292	152977822	-	Asuc_0136	-	LysR family transcriptional regulator
135	 48.64	0	163587..164063	-	158	152977823	-	Asuc_0137	-	RNA methyltransferase
136	 41.31	0	164136..164348	-	70	152977824	-	Asuc_0138	-	hypothetical protein
137	 46.17	0	164456..164860	-	134	152977825	-	Asuc_0139	-	protein tyrosine phosphatase
138	 50.86	+1	165022..166071	-	349	152977826	-	Asuc_0140	-	L-asparaginase II
139	 45.94	0	166106..167533	-	475	152977827	-	Asuc_0141	-	aspartate ammonia-lyase
140	 50.11	+1	167817..169139	+	440	152977828	-	Asuc_0142	-	anaerobic C4-dicarboxylate transporter
141	 46.24	0	169242..170132	+	296	152977829	-	Asuc_0143	-	hypothetical protein
45.47	MEAN

4.33	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.