IslandPath Analysis: Actinobacillus succinogenes 130Z



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.47   STD DEV: 4.33
Actinobacillus succinogenes 130Z, complete genome - 1..2319663
2079 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
777	 45.97	0	851001..851633	+	210	152978465	-	Asuc_0789	-	toluene tolerance family protein
778	 46.15	0	851638..851988	+	116	152978466	-	Asuc_0790	-	anti-sigma-factor antagonist
779	 42.64	0	852009..852266	+	85	152978467	-	Asuc_0791	-	BolA family protein
780	 49.25	0	852279..853541	+	420	152978468	-	Asuc_0792	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
781	 51.17	+1	853579..854217	-	212	152978469	-	Asuc_0793	-	ABC transporter related
782	 46.33	0	854204..854911	-	235	152978470	-	Asuc_0794	-	cobalt transport protein
783	 53.27	+1	854908..855519	-	203	152978471	-	Asuc_0795	-	cobalt transport protein CbiM
784	 51.48	+1	855519..856025	-	168	152978472	-	Asuc_0796	-	hypothetical protein
785	 48.79	0	856025..856729	-	234	152978473	-	Asuc_0797	-	putative ABC-type Co2+ transport system, periplasmic component
786	 50.61	+1	856848..857258	+	136	152978474	-	Asuc_0798	-	MerR family transcriptional regulator
787	 51.79	+1	857265..857963	-	232	152978475	-	Asuc_0799	-	alanine racemase domain-containing protein
788	 50.62	+1	858090..858656	+	188	152978476	-	Asuc_0800	-	superoxide dismutase
789	 49.41	0	858908..861364	+	818	152978477	-	Asuc_0801	-	bifunctional aspartokinase I/homeserine dehydrogenase I
790	 50.21	+1	861364..862311	+	315	152978478	-	Asuc_0802	-	homoserine kinase
791	 48.86	0	862403..863677	+	424	152978479	-	Asuc_0803	-	threonine synthase
792	 49.92	+1	863819..865705	+	628	152978480	-	Asuc_0804	-	bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase
793	 47.70	0	865702..866049	+	115	152978481	-	Asuc_0805	-	arsenate reductase and related
794	 33.90	-2	866281..866814	+	177	152978482	-	Asuc_0806	-	hypothetical protein
795	 49.69	0	866869..867999	+	376	152978483	-	Asuc_0807	-	succinyl-diaminopimelate desuccinylase
796	 47.58	0	868041..868721	+	226	152978484	-	Asuc_0808	-	peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin
797	 41.94	0	868881..869426	-	181	152978485	-	Asuc_0809	-	hypothetical protein
798	 50.07	+1	869576..870931	+	451	152978486	-	Asuc_0810	-	peptidase U62 modulator of DNA gyrase
799	 44.32	0	871113..871649	+	178	152978487	-	Asuc_0811	-	hypoxanthine phosphoribosyltransferase
800	 39.60	-1	871694..872905	+	403	152978488	-	Asuc_0812	-	putative transcriptional regulator
801	 35.83	-2	873050..874090	+	346	152978489	-	Asuc_0813	-	lipopolysaccharide biosynthesis protein
802	 35.07	-2	874083..874889	+	268	152978490	-	Asuc_0814	-	hypothetical protein
803	 28.48	-2	874896..876152	+	418	152978491	-	Asuc_0815	-	polysaccharide biosynthesis protein
804	 30.72	-2	876134..876592	+	152	152978492	-	Asuc_0816	-	glycerol-3-phosphate cytidylyltransferase
805	 31.79	-2	876589..877686	+	365	152978493	-	Asuc_0817	-	CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
806	 26.55	-2	877688..879013	+	441	152978494	-	Asuc_0818	-	hypothetical protein
807	 35.19	-2	879177..880895	+	572	152978495	-	Asuc_0819	-	hypothetical protein
808	 26.38	-2	881379..882140	+	253	152978496	-	Asuc_0820	-	hypothetical protein
809	 35.96	-2	882216..883319	+	367	152978497	-	Asuc_0821	-	UDP-galactopyranose mutase
810	 36.93	-1	883708..885126	+	472	152978498	-	Asuc_0822	-	undecaprenyl-phosphate galactose phosphotransferase
811	 31.24	-2	885147..886247	+	366	152978499	-	Asuc_0823	-	acyltransferase 3
812	 29.14	-2	886259..887308	+	349	152978500	-	Asuc_0824	-	acyltransferase 3
813	 34.62	-2	887391..888092	+	233	152978501	-	Asuc_0825	-	hypothetical protein
814	 42.94	0	888143..889204	+	353	152978502	-	Asuc_0826	-	dTDP-glucose 4,6-dehydratase
815	 29.08	-2	889223..889669	+	148	152978503	-	Asuc_0827	-	HI0074 family nucleotidyltransferase substrate binding protein
816	 32.99	-2	889662..889955	+	97	152978504	-	Asuc_0828	-	DNA polymerase beta subunit
817	 41.67	0	889970..890845	+	291	152978505	-	Asuc_0829	-	glucose-1-phosphate thymidylyltransferase
818	 43.26	0	890928..891803	+	291	152978506	-	Asuc_0830	-	dTDP-4-dehydrorhamnose reductase
819	 29.45	-2	891815..892381	+	188	152978507	-	Asuc_0831	-	hypothetical protein
820	 41.44	0	892383..892925	+	180	152978508	-	Asuc_0832	-	dTDP-4-dehydrorhamnose 3,5-epimerase
821	 45.96	0	892999..894297	+	432	152978509	-	Asuc_0833	-	aminopeptidase B
822	 45.07	0	894299..894724	+	141	152978510	-	Asuc_0834	-	nucleoside diphosphate kinase
823	 50.61	+1	894848..895999	+	383	152978511	-	Asuc_0835	-	S-adenosylmethionine synthetase
824	 43.84	0	896141..896749	+	202	152978512	-	Asuc_0836	-	porin opacity type
825	 45.42	0	896824..897336	+	170	152978513	-	Asuc_0837	-	hypothetical protein
826	 45.49	0	897401..897976	+	191	152978514	-	Asuc_0838	-	porin opacity type
827	 47.38	0	898164..900050	+	628	152978515	-	Asuc_0839	-	heat shock protein 90
828	 48.54	0	900065..900886	+	273	152978516	-	Asuc_0840	-	4'-phosphopantetheinyl transferase
829	 49.36	0	900994..901617	+	207	152978517	-	Asuc_0841	-	ADP-ribose diphosphatase
830	 45.85	0	901760..902590	+	276	152978518	-	Asuc_0842	-	cyclic 3',5'-adenosine monophosphate phosphodiesterase
831	 45.13	0	902738..903373	+	211	152978519	-	Asuc_0843	-	cytochrome c biogenesis protein CcmA
832	 48.05	0	903377..904042	+	221	152978520	-	Asuc_0844	-	heme exporter protein CcmB
833	 45.36	0	904058..904789	+	243	152978521	-	Asuc_0845	-	heme exporter protein CcmC
834	 44.12	0	904828..905031	+	67	152978522	-	Asuc_0846	-	Heme exporter protein D (CcmD)
835	 47.40	0	905028..905546	+	172	152978523	-	Asuc_0847	-	cytochrome c-type biogenesis protein CcmE
836	 47.22	0	905546..907504	+	652	152978524	-	Asuc_0848	-	cytochrome c-type biogenesis protein CcmF
837	 42.86	0	907497..908042	+	181	152978525	-	Asuc_0849	-	periplasmic protein thiol--disulphide oxidoreductase DsbE
838	 44.31	0	908042..908524	+	160	152978526	-	Asuc_0850	-	cytochrome C biogenesis protein
839	 38.96	-1	908526..909431	+	301	152978527	-	Asuc_0851	-	NrfG protein
840	 36.53	-2	909441..909941	+	166	152978528	-	Asuc_0852	-	hypothetical protein
841	 45.42	0	909954..910259	+	101	152978529	-	Asuc_0853	-	hypothetical protein
842	 37.99	-1	910387..911181	+	264	152978530	-	Asuc_0854	-	glutamate racemase
843	 37.83	-1	916979..919378	+	799	152978531	-	Asuc_0855	-	hypothetical protein
844	 37.65	-1	919409..921190	+	593	152978532	-	Asuc_0856	-	polysaccharide deacetylase
845	 42.03	0	921200..922429	+	409	152978533	-	Asuc_0857	-	N-glycosyltransferase PgaC
846	 38.04	-1	922449..922724	+	91	152978534	-	Asuc_0858	-	hypothetical protein
847	 41.98	0	922847..924373	-	508	152978535	-	Asuc_0859	-	glycoside hydrolase family protein
848	 42.97	0	924497..926332	+	611	152978536	-	Asuc_0860	-	integral membrane sensor hybrid histidine kinase
849	 48.26	0	926345..927148	-	267	152978537	-	Asuc_0861	-	inositol-phosphate phosphatase
850	 43.60	0	927332..928081	+	249	152978538	-	Asuc_0862	-	RNA methyltransferase
851	 43.01	0	928138..928602	+	154	152978539	-	Asuc_0863	-	BadM/Rrf2 family transcriptional regulator
852	 46.09	0	928613..929827	+	404	152978540	-	Asuc_0864	-	cysteine desulfurase IscS
853	 46.09	0	929875..930258	+	127	152978541	-	Asuc_0865	-	scaffold protein
854	 41.05	-1	930324..930647	+	107	152978542	-	Asuc_0866	-	iron-sulfur cluster assembly protein IscA
855	 43.18	0	930660..931187	+	175	152978543	-	Asuc_0867	-	co-chaperone HscB
856	 50.51	+1	931194..933038	+	614	152978544	-	Asuc_0868	-	chaperone protein HscA
857	 46.78	0	933055..933396	+	113	152978545	-	Asuc_0869	-	ferredoxin, 2Fe-2S type, ISC system
858	 43.08	0	933396..933590	+	64	152978546	-	Asuc_0870	-	hypothetical protein
859	 44.29	0	933705..934343	+	212	152978547	-	Asuc_0871	-	uridine kinase
860	 47.35	0	934345..934929	+	194	152978548	-	Asuc_0872	-	deoxycytidine triphosphate deaminase
861	 43.19	0	934932..936281	+	449	152978549	-	Asuc_0873	-	hypothetical protein
862	 44.97	0	936563..938074	-	503	152978550	-	Asuc_0874	-	GTP-binding protein EngA
863	 42.05	0	938452..939231	-	259	152978551	-	Asuc_0875	-	DNA polymerase III subunit epsilon
864	 41.51	0	939303..939767	+	154	152978552	-	Asuc_0876	-	ribonuclease H
865	 45.02	0	939955..940587	-	210	152978553	-	Asuc_0877	-	LexA repressor
866	 44.93	0	940713..941195	-	160	152978554	-	Asuc_0878	-	SsrA-binding protein
867	 45.34	0	941325..942032	-	235	152978555	-	Asuc_0879	-	two-component response regulator
868	 48.42	0	942217..942501	-	94	152978556	-	Asuc_0880	-	YCII-related
869	 43.92	0	942528..942971	-	147	152978557	-	Asuc_0881	-	thioesterase superfamily protein
870	 39.48	-1	942974..943510	-	178	152978558	-	Asuc_0882	-	intracellular septation protein A
871	 40.83	-1	943512..944285	-	257	152978559	-	Asuc_0883	-	hypothetical protein
872	 43.05	0	944471..946147	-	558	152978560	-	Asuc_0884	-	DNA repair protein RecN
873	 44.96	0	946222..947133	-	303	152978561	-	Asuc_0885	-	inorganic polyphosphate/ATP-NAD kinase
874	 45.83	0	947259..947858	+	199	152978562	-	Asuc_0886	-	GrpE protein
875	 49.63	0	947927..949963	-	678	152978563	-	Asuc_0887	-	5-methylaminomethyl-2-thiouridine methyltransferase
876	 48.24	0	950129..951349	+	406	152978564	-	Asuc_0888	-	3-oxoacyl-(acyl carrier protein) synthase I
45.47	MEAN

4.33	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.