IslandPathversion 1.0

IslandPath Analysis: Actinobacillus succinogenes 130Z



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.47 STD DEV: 4.33
Actinobacillus succinogenes 130Z, complete genome - 1..2319663
2079 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
692	 41.75	0	760927..761223	+	98	152978380	-	Asuc_0701	-	hypothetical protein
693	 47.21	0	761229..761891	+	220	152978381	-	Asuc_0702	-	lipoyltransferase
694	 46.42	0	761925..762887	+	320	152978382	-	Asuc_0703	-	lipoyl synthase
695	 44.64	0	763321..764823	+	500	152978383	-	Asuc_0704	-	cytochrome c nitrite reductase
696	 43.46	0	764904..765545	+	213	152978384	-	Asuc_0705	-	cytochrome c-type protein NrfB
697	 44.79	0	765542..766222	+	226	152978385	-	Asuc_0706	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
698	 41.04	-1	766222..767181	+	319	152978386	-	Asuc_0707	-	polysulphide reductase NrfD
699	 46.51	0	767266..769170	+	634	152978387	-	Asuc_0708	-	cytochrome c-type biogenesis protein CcmF
700	 43.18	0	769334..769861	+	175	152978388	-	Asuc_0709	-	periplasmic protein thiol--disulphide oxidoreductase DsbE
701	 45.39	0	769858..770313	+	151	152978389	-	Asuc_0710	-	cytochrome C biogenesis protein
702	 45.85	0	770313..771143	+	276	152978390	-	Asuc_0711	-	TPR repeat-containing protein
703	 50.21	+1	771143..772357	+	404	152978391	-	Asuc_0712	-	hypothetical protein
704	 45.36	0	772477..773565	+	362	152978392	-	Asuc_0713	-	methionine synthase vitamin-B12 independent
705	 46.17	0	773630..774112	-	160	152978393	-	Asuc_0714	-	dihydrofolate reductase
706	 46.88	0	774127..774591	-	154	152978394	-	Asuc_0715	-	hypothetical protein
707	 49.62	0	774593..775372	-	259	152978395	-	Asuc_0716	-	hypothetical protein
708	 50.99	+1	775542..776651	+	369	152978396	-	Asuc_0717	-	gamma-glutamyl kinase
709	 52.63	+1	776765..777391	-	208	152978397	-	Asuc_0718	-	peptidylprolyl isomerase FKBP-type
710	 46.51	0	777404..778291	-	295	152978398	-	Asuc_0719	-	phosphatidylserine decarboxylase
711	 42.13	0	780712..780927	+	71	152978399	-	Asuc_0721	-	30S ribosomal protein S21
712	 46.54	0	781020..782783	+	587	152978400	-	Asuc_0722	-	DNA primase
713	 45.89	0	782865..784736	+	623	152978401	-	Asuc_0723	-	RNA polymerase sigma factor RpoD
714	 45.36	0	784784..785332	-	182	152978402	-	Asuc_0724	-	CMP/dCMP deaminase zinc-binding
715	 48.36	0	785859..786710	-	283	152978403	-	Asuc_0725	-	thymidylate synthase
716	 46.69	0	786720..787535	-	271	152978404	-	Asuc_0726	-	prolipoprotein diacylglyceryl transferase
717	 47.98	0	787559..788350	-	263	152978405	-	Asuc_0727	-	hypothetical protein
718	 45.29	0	788347..788940	-	197	152978406	-	Asuc_0728	-	dinucleoside polyphosphate hydrolase
719	 49.33	0	789526..790563	+	345	152978407	-	Asuc_0729	-	phosphoribosylaminoimidazole synthetase
720	 49.14	0	790621..791259	+	212	152978408	-	Asuc_0730	-	phosphoribosylglycinamide formyltransferase
721	 44.07	0	791344..791883	+	179	152978409	-	Asuc_0731	-	pyrimidine regulatory protein PyrR
722	 46.75	0	791947..792900	+	317	152978410	-	Asuc_0732	-	PpiC-type peptidyl-prolyl cis-trans isomerase
723	 48.90	0	793019..793885	+	288	152978411	-	Asuc_0733	-	dimethyladenosine transferase
724	 48.19	0	793963..794790	+	275	152978412	-	Asuc_0734	-	diadenosine tetraphosphatase
725	 41.26	0	794790..795407	+	205	152978413	-	Asuc_0735	-	hypothetical protein
726	 45.74	0	795554..796657	+	367	152978414	-	Asuc_0736	-	transglutaminase domain-containing protein
727	 42.15	0	796632..796994	+	120	152978415	-	Asuc_0737	-	putative mercuric transport protein
728	 40.29	-1	796991..797263	+	90	152978416	-	Asuc_0738	-	heavy metal transport/detoxification protein
729	 38.53	-1	797305..798708	-	467	152978417	-	Asuc_0739	-	hypothetical protein
730	 34.50	-2	798734..799246	-	170	152978418	-	Asuc_0740	-	prolyl aminopeptidase
731	 38.30	-1	799250..799672	-	140	152978419	-	Asuc_0741	-	MarR family transcriptional regulator
732	 36.54	-2	800032..801123	+	363	152978420	-	Asuc_0742	-	acyltransferase 3
733	 48.51	0	801324..803906	+	860	152978421	-	Asuc_0743	-	leucyl-tRNA synthetase
734	 43.98	0	803962..804675	+	237	152978422	-	Asuc_0744	-	hypothetical protein
735	 46.52	0	804678..805208	+	176	152978423	-	Asuc_0745	-	rare lipoprotein B
736	 47.71	0	805208..806257	+	349	152978424	-	Asuc_0746	-	DNA polymerase III subunit delta
737	 48.71	0	806630..807982	+	450	152978425	-	Asuc_0747	-	amino acid carrier protein
738	 47.07	0	808153..808938	+	261	152978426	-	Asuc_0748	-	DeoR family transcriptional regulator
739	 46.97	0	809001..810833	+	610	152978427	-	Asuc_0749	-	D-fructose-6-phosphate amidotransferase
740	 49.55	0	811011..812219	+	402	152978428	-	Asuc_0750	-	major facilitator transporter
741	 44.21	0	812274..813533	-	419	152978429	-	Asuc_0751	-	hypothetical protein
742	 42.71	0	813625..814413	-	262	152978430	-	Asuc_0752	-	cytochrome c assembly protein
743	 45.40	0	814538..815929	+	463	152978431	-	Asuc_0753	-	signal recognition particle protein
744	 40.81	-1	816029..816697	+	222	152978432	-	Asuc_0754	-	YheO domain-containing protein
745	 42.78	0	816697..817077	+	126	152978433	-	Asuc_0755	-	hypothetical protein
746	 39.67	-1	817074..817436	+	120	152978434	-	Asuc_0756	-	hypothetical protein
747	 41.84	0	817446..817727	+	93	152978435	-	Asuc_0757	-	hypothetical protein
748	 43.56	0	817868..818317	-	149	152978436	-	Asuc_0758	-	50S ribosomal protein L9
749	 44.30	0	818333..818560	-	75	152978437	-	Asuc_0759	-	30S ribosomal protein S18
750	 40.12	-1	818573..818896	-	107	152978438	-	Asuc_0760	-	primosomal replication protein N
751	 44.62	0	818883..819263	-	126	152978439	-	Asuc_0761	-	30S ribosomal protein S6
752	 45.18	0	819605..821056	-	483	152978440	-	Asuc_0762	-	lytic transglycosylase catalytic
753	 51.52	+1	821532..822389	+	285	152978441	-	Asuc_0763	-	methenyltetrahydrofolate cyclohydrolase
754	 44.67	0	822536..822976	+	146	152978442	-	Asuc_0764	-	hypothetical protein
755	 44.75	0	823117..824412	+	431	152978443	-	Asuc_0765	-	trigger factor
756	 47.86	0	824552..825136	+	194	152978444	-	Asuc_0766	-	ATP-dependent Clp protease proteolytic subunit
757	 45.15	0	825152..826387	+	411	152978445	-	Asuc_0767	-	ATP-dependent protease ATP-binding subunit
758	 47.71	0	826515..828935	+	806	152978446	-	Asuc_0768	-	ATP-dependent protease La
759	 43.21	0	829116..830006	+	296	152978447	-	Asuc_0769	-	peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
760	 44.80	0	830125..831999	+	624	152978448	-	Asuc_0770	-	PpiC-type peptidyl-prolyl cis-trans isomerase
761	 46.27	0	832876..834870	+	664	152978449	-	Asuc_0773	-	YadA domain-containing protein
762	 42.42	0	835097..835822	+	241	152978450	-	Asuc_0774	-	30S ribosomal protein S2
763	 46.36	0	835951..836802	+	283	152978451	-	Asuc_0775	-	elongation factor Ts
764	 43.84	0	836911..837900	-	329	152978452	-	Asuc_0776	-	hypothetical protein
765	 43.72	0	838102..839901	-	599	152978453	-	Asuc_0777	-	sulfatase
766	 43.52	0	839923..840138	-	71	152978454	-	Asuc_0778	-	hypothetical protein
767	 45.69	0	840250..841269	+	339	152978455	-	Asuc_0779	-	nucleoid-associated protein NdpA
768	 46.38	0	841339..841752	+	137	152978456	-	Asuc_0780	-	SmpA/OmlA domain-containing protein
769	 45.53	0	841792..842496	+	234	152978457	-	Asuc_0781	-	two component transcriptional regulator
770	 44.94	0	842506..843927	+	473	152978458	-	Asuc_0782	-	two-component sensor protein
771	 46.67	0	843988..845202	-	404	152978459	-	Asuc_0783	-	aminotransferase AlaT
772	 49.96	+1	845614..846894	+	426	152978460	-	Asuc_0784	-	isochorismate synthase
773	 51.14	+1	846897..848603	+	568	152978461	-	Asuc_0785	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
774	 48.75	0	848781..849578	+	265	152978462	-	Asuc_0786	-	ABC transporter related
775	 51.41	+1	849575..850354	+	259	152978463	-	Asuc_0787	-	hypothetical protein
776	 44.18	0	850458..850964	+	168	152978464	-	Asuc_0788	-	hypothetical protein
777	 45.97	0	851001..851633	+	210	152978465	-	Asuc_0789	-	toluene tolerance family protein
778	 46.15	0	851638..851988	+	116	152978466	-	Asuc_0790	-	anti-sigma-factor antagonist
779	 42.64	0	852009..852266	+	85	152978467	-	Asuc_0791	-	BolA family protein
780	 49.25	0	852279..853541	+	420	152978468	-	Asuc_0792	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
781	 51.17	+1	853579..854217	-	212	152978469	-	Asuc_0793	-	ABC transporter related
782	 46.33	0	854204..854911	-	235	152978470	-	Asuc_0794	-	cobalt transport protein
783	 53.27	+1	854908..855519	-	203	152978471	-	Asuc_0795	-	cobalt transport protein CbiM
784	 51.48	+1	855519..856025	-	168	152978472	-	Asuc_0796	-	hypothetical protein
785	 48.79	0	856025..856729	-	234	152978473	-	Asuc_0797	-	putative ABC-type Co2+ transport system, periplasmic component
786	 50.61	+1	856848..857258	+	136	152978474	-	Asuc_0798	-	MerR family transcriptional regulator
787	 51.79	+1	857265..857963	-	232	152978475	-	Asuc_0799	-	alanine racemase domain-containing protein
788	 50.62	+1	858090..858656	+	188	152978476	-	Asuc_0800	-	superoxide dismutase
789	 49.41	0	858908..861364	+	818	152978477	-	Asuc_0801	-	bifunctional aspartokinase I/homeserine dehydrogenase I
790	 50.21	+1	861364..862311	+	315	152978478	-	Asuc_0802	-	homoserine kinase
791	 48.86	0	862403..863677	+	424	152978479	-	Asuc_0803	-	threonine synthase
45.47	MEAN

4.33	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.