IslandPathversion 1.0

IslandPath Analysis: Actinobacillus succinogenes 130Z



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.47 STD DEV: 4.33
Actinobacillus succinogenes 130Z, complete genome - 1..2319663
2079 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
616	 51.46	+1	684812..685528	-	238	152978304	-	Asuc_0624	-	purine nucleoside phosphorylase
617	 49.16	0	685584..686771	-	395	152978305	-	Asuc_0625	-	phosphopentomutase
618	 51.34	+1	686916..688181	-	421	152978306	-	Asuc_0626	-	nucleoside transporter
619	 51.80	+1	688320..688958	+	212	152978307	-	Asuc_0627	-	hypothetical protein
620	 47.69	0	689073..690326	+	417	152978308	-	Asuc_0628	-	aromatic amino acid transporter
621	 43.93	0	690340..691113	+	257	152978309	-	Asuc_0629	-	methyltransferase type 11
622	 51.72	+1	691370..692272	+	300	152978310	-	Asuc_0630	-	ATP phosphoribosyltransferase
623	 53.40	+1	692450..693730	+	426	152978311	-	Asuc_0631	-	histidinol dehydrogenase
624	 47.73	0	693817..694476	+	219	152978312	-	Asuc_0632	-	lysine exporter protein LysE/YggA
625	 51.38	+1	694566..695618	+	350	152978313	-	Asuc_0633	-	histidinol-phosphate aminotransferase
626	 46.30	0	695720..696814	+	364	152978314	-	Asuc_0634	-	imidazole glycerol-phosphate dehydratase/histidinol phosphatase
627	 23.43	-2	696932..697870	+	312	152978315	-	Asuc_0635	-	hypothetical protein
628	 45.76	0	697879..698055	+	58	152978316	-	Asuc_0636	-	glutamine amidotransferase
629	 44.54	0	698150..698836	+	228	152978317	-	Asuc_0637	-	GCN5-related N-acetyltransferase
630	 46.25	0	699108..700547	+	479	152978318	-	Asuc_0639	-	nicotinate phosphoribosyltransferase
631	 52.40	+1	700544..701293	+	249	152978319	-	Asuc_0640	-	NAD+ synthetase
632	 45.78	0	701351..701800	+	149	152978320	-	Asuc_0641	-	3-dehydroquinate dehydratase
633	 50.54	+1	701967..702425	+	152	152978321	-	Asuc_0642	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
634	 48.78	0	702490..703836	+	448	152978322	-	Asuc_0643	-	acetyl-CoA carboxylase biotin carboxylase subunit
635	 44.34	0	703882..704199	+	105	152978323	-	Asuc_0644	-	hypothetical protein
636	 50.10	+1	704196..705674	+	492	152978324	-	Asuc_0645	-	sodium/panthothenate symporter
637	 51.70	+1	706007..706888	+	293	152978325	-	Asuc_0646	-	ribosomal protein L11 methyltransferase
638	 47.59	0	707076..708071	+	331	152978326	-	Asuc_0647	-	nifR3 family TIM-barrel protein
639	 43.67	0	708052..708351	+	99	152978327	-	Asuc_0648	-	DNA-binding protein Fis
640	 48.44	0	708434..709426	-	330	152978328	-	Asuc_0649	-	O-succinylbenzoate synthase
641	 51.86	+1	709509..710366	-	285	152978329	-	Asuc_0650	-	naphthoate synthase
642	 48.53	0	710503..711048	-	181	152978330	-	Asuc_0651	-	alkylhydroperoxidase
643	 46.83	0	711124..711864	-	246	152978331	-	Asuc_0652	-	acyl-CoA thioester hydrolase YfbB
644	 44.13	0	711864..713447	-	527	152978332	-	Asuc_0653	-	sulfatase
645	 46.38	0	713670..715202	-	510	152978333	-	Asuc_0654	-	catalase
646	 50.14	+1	715483..716196	+	237	152978334	-	Asuc_0655	-	uridylate kinase
647	 44.62	0	716291..716848	+	185	152978335	-	Asuc_0656	-	ribosome recycling factor
648	 46.55	0	716912..718099	+	395	152978336	-	Asuc_0657	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
649	 44.91	0	718188..718757	-	189	152978337	-	Asuc_0658	-	5-formyltetrahydrofolate cyclo-ligase
650	 41.36	0	719013..719336	-	107	152978338	-	Asuc_0659	-	hypothetical protein
651	 41.26	0	719443..719997	+	184	152978339	-	Asuc_0660	-	yecA family protein
652	 48.01	0	720006..721334	+	442	152978340	-	Asuc_0661	-	peptidase M24
653	 48.72	0	721475..723118	-	547	152978341	-	Asuc_0662	-	chaperonin GroEL
654	 46.05	0	723224..723514	-	96	152978342	-	Asuc_0663	-	co-chaperonin GroES
655	 42.22	0	723708..723932	+	74	152978343	-	Asuc_0664	-	twin argininte translocase protein A
656	 46.36	0	723936..724526	+	196	152978344	-	Asuc_0665	-	sec-independent translocase
657	 46.43	0	724523..725278	+	251	152978345	-	Asuc_0666	-	Sec-independent protein translocase, TatC subunit
658	 48.09	0	725344..726366	+	340	152978346	-	Asuc_0667	-	delta-aminolevulinic acid dehydratase
659	 46.26	0	726468..727109	-	213	152978347	-	Asuc_0668	-	superoxide dismutase
660	 47.98	0	727245..728528	-	427	152978348	-	Asuc_0669	-	malate dehydrogenase
661	 47.41	0	728666..729361	+	231	152978349	-	Asuc_0670	-	pseudouridine synthase
662	 48.16	0	729358..730551	+	397	152978350	-	Asuc_0671	-	bicyclomycin/multidrug efflux system
663	 47.62	0	730567..730797	+	76	152978351	-	Asuc_0672	-	hypothetical protein
664	 33.50	-2	731303..733138	+	611	152978352	-	Asuc_0673	-	DNA methylase N-4/N-6 domain-containing protein
665	 40.45	-1	733148..735787	+	879	152978353	-	Asuc_0674	-	type III restriction protein res subunit
666	 51.65	+1	735951..736436	-	161	152978354	-	Asuc_0675	-	phosphopantetheine adenylyltransferase
667	 49.49	0	736438..737706	-	422	152978355	-	Asuc_0676	-	3-deoxy-D-manno-octulosonic-acid transferase
668	 49.03	0	737797..738567	-	256	152978356	-	Asuc_0677	-	triosephosphate isomerase
669	 40.92	-1	738746..739180	+	144	152978357	-	Asuc_0678	-	WecD protein
670	 45.33	0	739235..740026	-	263	152978358	-	Asuc_0679	-	peptidylprolyl isomerase FKBP-type
671	 39.91	-1	740121..740333	+	70	152978359	-	Asuc_0680	-	hypothetical protein
672	 43.84	0	740335..740553	+	72	152978360	-	Asuc_0681	-	hypothetical protein
673	 45.51	0	740550..742577	+	675	152978361	-	Asuc_0682	-	ATP-dependent DNA helicase Rep
674	 48.50	0	743202..743801	+	199	152978362	-	Asuc_0683	-	beta-phosphoglucomutase family hydrolase
675	 45.54	0	743801..744406	+	201	152978363	-	Asuc_0684	-	hexapaptide repeat-containing transferase
676	 44.58	0	744648..745154	+	168	152978364	-	Asuc_0685	-	S-ribosylhomocysteinase
677	 50.42	+1	745166..746347	+	393	152978365	-	Asuc_0686	-	phosphoribosylglycinamide formyltransferase 2
678	 49.17	0	746413..747378	-	321	152978366	-	Asuc_0687	-	6-phosphofructokinase
679	 46.17	0	747544..748992	-	482	152978367	-	Asuc_0688	-	type IV pilus secretin PilQ
680	 45.93	0	749002..749382	-	126	152978368	-	Asuc_0689	-	hypothetical protein
681	 43.43	0	749385..749978	-	197	152978369	-	Asuc_0690	-	competence C protein, putative
682	 43.59	0	749975..750481	-	168	152978370	-	Asuc_0691	-	fimbrial assembly family protein
683	 44.68	0	750487..751323	-	278	152978371	-	Asuc_0692	-	competence protein A
684	 48.59	0	751453..754041	+	862	152978372	-	Asuc_0693	-	1A family penicillin-binding protein
685	 47.28	0	754118..754963	+	281	152978373	-	Asuc_0694	-	hypothetical protein
686	 45.71	0	755003..755317	+	104	152978374	-	Asuc_0695	-	iojap-like protein
687	 52.14	+1	755353..755820	+	155	152978375	-	Asuc_0696	-	hypothetical protein
688	 48.49	0	755840..757924	+	694	152978376	-	Asuc_0697	-	peptidoglycan glycosyltransferase
689	 45.58	0	757929..759047	+	372	152978377	-	Asuc_0698	-	rod shape-determining protein RodA
690	 43.62	0	759123..759608	+	161	152978378	-	Asuc_0699	-	rare lipoprotein A
691	 45.45	0	759625..760812	+	395	152978379	-	Asuc_0700	-	Serine-type D-Ala-D-Ala carboxypeptidase
692	 41.75	0	760927..761223	+	98	152978380	-	Asuc_0701	-	hypothetical protein
693	 47.21	0	761229..761891	+	220	152978381	-	Asuc_0702	-	lipoyltransferase
694	 46.42	0	761925..762887	+	320	152978382	-	Asuc_0703	-	lipoyl synthase
695	 44.64	0	763321..764823	+	500	152978383	-	Asuc_0704	-	cytochrome c nitrite reductase
696	 43.46	0	764904..765545	+	213	152978384	-	Asuc_0705	-	cytochrome c-type protein NrfB
697	 44.79	0	765542..766222	+	226	152978385	-	Asuc_0706	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
698	 41.04	-1	766222..767181	+	319	152978386	-	Asuc_0707	-	polysulphide reductase NrfD
699	 46.51	0	767266..769170	+	634	152978387	-	Asuc_0708	-	cytochrome c-type biogenesis protein CcmF
700	 43.18	0	769334..769861	+	175	152978388	-	Asuc_0709	-	periplasmic protein thiol--disulphide oxidoreductase DsbE
701	 45.39	0	769858..770313	+	151	152978389	-	Asuc_0710	-	cytochrome C biogenesis protein
702	 45.85	0	770313..771143	+	276	152978390	-	Asuc_0711	-	TPR repeat-containing protein
703	 50.21	+1	771143..772357	+	404	152978391	-	Asuc_0712	-	hypothetical protein
704	 45.36	0	772477..773565	+	362	152978392	-	Asuc_0713	-	methionine synthase vitamin-B12 independent
705	 46.17	0	773630..774112	-	160	152978393	-	Asuc_0714	-	dihydrofolate reductase
706	 46.88	0	774127..774591	-	154	152978394	-	Asuc_0715	-	hypothetical protein
707	 49.62	0	774593..775372	-	259	152978395	-	Asuc_0716	-	hypothetical protein
708	 50.99	+1	775542..776651	+	369	152978396	-	Asuc_0717	-	gamma-glutamyl kinase
709	 52.63	+1	776765..777391	-	208	152978397	-	Asuc_0718	-	peptidylprolyl isomerase FKBP-type
710	 46.51	0	777404..778291	-	295	152978398	-	Asuc_0719	-	phosphatidylserine decarboxylase
711	 42.13	0	780712..780927	+	71	152978399	-	Asuc_0721	-	30S ribosomal protein S21
712	 46.54	0	781020..782783	+	587	152978400	-	Asuc_0722	-	DNA primase
713	 45.89	0	782865..784736	+	623	152978401	-	Asuc_0723	-	RNA polymerase sigma factor RpoD
714	 45.36	0	784784..785332	-	182	152978402	-	Asuc_0724	-	CMP/dCMP deaminase zinc-binding
715	 48.36	0	785859..786710	-	283	152978403	-	Asuc_0725	-	thymidylate synthase
45.47	MEAN

4.33	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.