IslandPathversion 1.0

IslandPath Analysis: Actinobacillus succinogenes 130Z



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.47 STD DEV: 4.33
Actinobacillus succinogenes 130Z, complete genome - 1..2319663
2079 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
498	 48.31	0	554985..556520	-	511	152978186	-	Asuc_0505	-	Mg chelatase, subunit ChlI
499	 47.34	0	556628..557248	-	206	152978187	-	Asuc_0506	-	GTPase EngB
500	 37.92	-1	557303..557716	-	137	152978188	-	Asuc_0507	-	transmembrane pair domain-containing protein
501	 46.23	0	557786..559150	-	454	152978189	-	Asuc_0508	-	ascorbate-specific PTS system enzyme IIC
502	 38.89	-1	559181..559450	-	89	152978190	-	Asuc_0509	-	phosphotransferase system lactose/cellobiose-specific IIB subunit
503	 46.25	0	559648..559887	-	79	152978191	-	Asuc_0510	-	SirA family protein
504	 44.01	0	559966..560574	+	202	152978192	-	Asuc_0511	-	hypothetical protein
505	 43.78	0	560592..562055	+	487	152978193	-	Asuc_0512	-	TrkH family potassium uptake protein
506	 39.02	-1	562055..562564	+	169	152978194	-	Asuc_0513	-	protoporphyrinogen oxidase
507	 39.74	-1	568259..568960	-	233	152978195	-	Asuc_0514	-	hypothetical protein
508	 41.28	0	569042..569947	+	301	152978196	-	Asuc_0515	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
509	 43.11	0	569992..570492	+	166	152978197	-	Asuc_0516	-	ribonuclease activity regulator protein RraA
510	 43.30	0	570621..570971	-	116	152978198	-	Asuc_0517	-	50S ribosomal protein L19
511	 45.66	0	571005..571742	-	245	152978199	-	Asuc_0518	-	tRNA (guanine-N(1)-)-methyltransferase
512	 41.48	0	571790..572317	-	175	152978200	-	Asuc_0519	-	16S rRNA-processing protein
513	 45.38	0	572348..572596	-	82	152978201	-	Asuc_0520	-	30S ribosomal protein S16
514	 46.65	0	572771..574339	-	522	152978202	-	Asuc_0521	-	glycosyl transferase family protein
515	 46.02	0	574477..575004	+	175	152978203	-	Asuc_0522	-	inorganic pyrophosphatase
516	 50.20	+1	575062..575820	+	252	152978204	-	Asuc_0523	-	peptidase M48 Ste24p
517	 44.29	0	575877..576944	-	355	152978205	-	Asuc_0524	-	glycosyl transferase group 1
518	 41.20	0	577022..577237	-	71	152978206	-	Asuc_0525	-	50S ribosomal protein L31
519	 32.33	-2	577383..578180	-	265	152978207	-	Asuc_0526	-	glycosyl transferase family protein
520	 48.68	0	578181..580421	+	746	152978208	-	Asuc_0527	-	primosome assembly protein PriA
521	 51.95	+1	580563..581384	+	273	152978209	-	Asuc_0528	-	cell division protein FtsN
522	 36.16	-2	581553..582119	+	188	152978210	-	Asuc_0529	-	TetR family transcriptional regulator
523	 45.03	0	582147..583343	+	398	152978211	-	Asuc_0530	-	RND family efflux transporter MFP subunit
524	 46.08	0	583360..586449	+	1029	152978212	-	Asuc_0531	-	acriflavin resistance protein
525	 45.30	0	586591..587175	-	194	152978213	-	Asuc_0532	-	phosphoheptose isomerase
526	 48.28	0	587362..587622	-	86	152978214	-	Asuc_0533	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
527	 48.38	0	587690..588520	+	276	152978215	-	Asuc_0534	-	ribonuclease T2
528	 47.70	0	588650..589825	+	391	152978216	-	Asuc_0535	-	phosphoglycerate kinase
529	 45.00	0	589929..591008	+	359	152978217	-	Asuc_0536	-	fructose-bisphosphate aldolase
530	 41.75	0	591086..592333	+	415	152978218	-	Asuc_0537	-	O-antigen polymerase
531	 46.67	0	592395..592739	-	114	152978219	-	Asuc_0538	-	hypothetical protein
532	 46.25	0	592763..593521	-	252	152978220	-	Asuc_0539	-	tRNA (guanine-N(7))-methyltransferase
533	 48.40	0	593663..594784	+	373	152978221	-	Asuc_0540	-	A/G-specific adenine glycosylase
534	 38.83	-1	594777..595049	+	90	152978222	-	Asuc_0541	-	hypothetical protein
535	 44.29	0	595059..596135	+	358	152978223	-	Asuc_0542	-	murein transglycosylase C
536	 43.64	0	596732..597226	-	164	152978224	-	Asuc_0543	-	hypothetical protein
537	 48.93	0	597238..597987	-	249	152978225	-	Asuc_0544	-	VacJ family lipoprotein
538	 48.14	0	598347..599474	+	375	152978226	-	Asuc_0545	-	carbamoyl phosphate synthase small subunit
539	 47.60	0	599586..602795	+	1069	152978227	-	Asuc_0546	-	carbamoyl phosphate synthase large subunit
540	 47.03	0	602893..604257	+	454	152978228	-	Asuc_0547	-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase
541	 43.54	0	604441..606477	-	678	152978229	-	Asuc_0548	-	choline/carnitine/betaine transporter
542	 46.21	0	606927..607967	+	346	152978230	-	Asuc_0549	-	oxidoreductase domain-containing protein
543	 47.90	0	608065..608682	+	205	152978231	-	Asuc_0550	-	glutathione S-transferase domain-containing protein
544	 43.86	0	608737..609648	-	303	152978232	-	Asuc_0551	-	cation diffusion facilitator family transporter
545	 46.44	0	609738..610607	-	289	152978233	-	Asuc_0552	-	2-hydroxy-3-oxopropionate reductase
546	 49.08	0	610970..612112	-	380	152978234	-	Asuc_0553	-	NADH:flavin oxidoreductase/NADH oxidase
547	 45.22	0	612381..613406	+	341	152978235	-	Asuc_0554	-	lipoyltransferase and lipoate-protein ligase
548	 49.62	0	613689..615131	-	480	152978236	-	Asuc_0555	-	glutamyl-tRNA synthetase
549	 47.19	0	615853..617757	+	634	152978237	-	Asuc_0556	-	sulfatase
550	 47.69	0	617785..621231	+	1148	152978238	-	Asuc_0557	-	transcription-repair coupling factor
551	 42.06	0	621449..621769	+	106	152978239	-	Asuc_0558	-	sigma 54 modulation protein/ribosomal protein S30EA
552	 52.94	+1	621893..623152	-	419	152978240	-	Asuc_0559	-	peptidase M23B
553	 42.71	0	623172..623363	-	63	152978241	-	Asuc_0560	-	hypothetical protein
554	 44.10	0	623374..623949	-	191	152978242	-	Asuc_0561	-	SNARE associated Golgi protein
555	 47.91	0	623990..624730	-	246	152978243	-	Asuc_0562	-	stationary phase survival protein SurE
556	 45.21	0	624817..626298	-	493	152978244	-	Asuc_0563	-	ketol-acid reductoisomerase
557	 46.31	0	626418..626810	+	130	152978245	-	Asuc_0564	-	glyoxalase/bleomycin resistance protein/dioxygenase
558	 48.06	0	626820..627668	+	282	152978246	-	Asuc_0565	-	DNA-binding transcriptional regulator IlvY
559	 48.98	0	627828..628958	+	376	152978247	-	Asuc_0566	-	DNA protecting protein DprA
560	 45.80	0	629120..629857	+	245	152978248	-	Asuc_0567	-	pyruvate formate-lyase activating enzyme
561	 49.76	0	630071..630703	+	210	152978249	-	Asuc_0568	-	hypothetical protein
562	 48.52	0	630827..631333	-	168	152978250	-	Asuc_0569	-	hypothetical protein
563	 50.96	+1	631363..632247	-	294	152978251	-	Asuc_0570	-	protein of unknown function DUF610 YibQ
564	 47.70	0	632247..633464	-	405	152978252	-	Asuc_0571	-	peptidase M23B
565	 47.66	0	633618..634301	+	227	152978253	-	Asuc_0572	-	phosphoglycerate mutase 1 family protein
566	 46.80	0	634412..635458	+	348	152978254	-	Asuc_0573	-	lipopolysaccharide heptosyltransferase II
567	 40.24	-1	635699..636292	-	197	152978255	-	Asuc_0574	-	hypothetical protein
568	 46.20	0	636296..637072	-	258	152978256	-	Asuc_0575	-	hypothetical protein
569	 47.83	0	637078..637746	-	222	152978257	-	Asuc_0576	-	uracil-DNA glycosylase
570	 42.19	0	638010..638393	+	127	152978258	-	Asuc_0577	-	autonomous glycyl radical cofactor GrcA
571	 46.82	0	638560..640353	+	597	152978259	-	Asuc_0578	-	GTP-binding protein LepA
572	 43.70	0	640364..641386	+	340	152978260	-	Asuc_0579	-	signal peptidase I
573	 43.85	0	641392..642066	+	224	152978261	-	Asuc_0580	-	ribonuclease III
574	 41.18	0	642063..642992	+	309	152978262	-	Asuc_0581	-	GTP-binding protein Era
575	 44.86	0	643081..644034	-	317	152978263	-	Asuc_0582	-	transaldolase B
576	 34.37	-2	644063..645889	-	608	152978264	-	Asuc_0583	-	transcriptional antiterminator, BglG
577	 37.81	-1	646384..646830	+	148	152978265	-	Asuc_0585	-	putative PTS IIA-like nitrogen-regulatory protein PtsN
578	 41.19	0	646852..647169	+	105	152978266	-	Asuc_0586	-	PTS system, fructose-specific, IIB subunnit
579	 41.43	0	647182..648231	+	349	152978267	-	Asuc_0587	-	PTS system, fructose subfamily, IIC subunit
580	 40.25	-1	648244..649515	+	423	152978268	-	Asuc_0588	-	hypothetical protein
581	 49.01	0	649628..651949	+	773	152978269	-	Asuc_0589	-	RNA-binding S1 domain-containing protein
582	 44.07	0	651949..653280	+	443	152978270	-	Asuc_0590	-	sodium/hydrogen exchanger
583	 49.94	+1	653348..655972	-	874	152978271	-	Asuc_0591	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
584	 46.74	0	656225..657313	-	362	152978272	-	Asuc_0592	-	glycerophosphodiester phosphodiesterase
585	 46.13	0	657449..658894	-	481	152978273	-	Asuc_0593	-	glycerol-3-phosphate transporter
586	 43.96	0	659104..659724	-	206	152978274	-	Asuc_0594	-	multiple antibiotic resistance (MarC)-related protein
587	 46.24	0	659869..661812	+	647	152978275	-	Asuc_0595	-	ABC transporter related
588	 50.00	+1	661838..662011	+	57	152978276	-	Asuc_0596	-	putative drug resistance protein
589	 46.30	0	662266..662859	-	197	152978277	-	Asuc_0597	-	hypothetical protein
590	 48.72	0	662972..663283	+	103	152978278	-	Asuc_0598	-	BolA family protein
591	 44.52	0	663546..664877	+	443	152978279	-	Asuc_0599	-	Na(+)-translocating NADH-quinone reductase subunit A
592	 46.42	0	664880..666109	+	409	152978280	-	Asuc_0600	-	Na(+)-translocating NADH-quinone reductase subunit B
593	 43.71	0	666102..666872	+	256	152978281	-	Asuc_0601	-	Na(+)-translocating NADH-quinone reductase subunit C
594	 42.95	0	666872..667495	+	207	152978282	-	Asuc_0602	-	Na(+)-translocating NADH-quinone reductase subunit D
595	 41.54	0	667499..668095	+	198	152978283	-	Asuc_0603	-	Na(+)-translocating NADH-quinone reductase subunit E
596	 45.12	0	668106..669335	+	409	152978284	-	Asuc_0604	-	Na(+)-translocating NADH-quinone reductase subunit F
597	 44.30	0	669491..670612	+	373	152978285	-	Asuc_0605	-	ApbE family lipoprotein
45.47	MEAN

4.33	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.