IslandPathversion 1.0

IslandPath Analysis: Actinobacillus succinogenes 130Z



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.47 STD DEV: 4.33
Actinobacillus succinogenes 130Z, complete genome - 1..2319663
2079 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
166	 35.94	-2	199598..201019	-	473	152977854	-	Asuc_0168	-	hypothetical protein
167	 41.48	0	201042..202514	-	490	152977855	-	Asuc_0169	-	carbohydrate kinase FGGY
168	 39.96	-1	202530..203465	-	311	152977856	-	Asuc_0170	-	transketolase domain-containing protein
169	 38.27	-1	203458..204288	-	276	152977857	-	Asuc_0171	-	transketolase domain-containing protein
170	 37.67	-1	204470..205507	-	345	152977858	-	Asuc_0172	-	monosaccharide-transporting ATPase
171	 35.89	-2	205528..207051	-	507	152977859	-	Asuc_0173	-	ABC transporter related
172	 33.17	-2	207063..207659	-	198	152977860	-	Asuc_0174	-	putative lipoprotein
173	 37.73	-1	207716..208648	-	310	152977861	-	Asuc_0175	-	periplasmic binding protein/LacI transcriptional regulator
174	 35.32	-2	208793..209746	-	317	152977862	-	Asuc_0176	-	DeoR family transcriptional regulator
175	 39.69	-1	209847..210491	-	214	152977863	-	Asuc_0177	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
176	 51.06	+1	210975..212486	-	503	152977864	-	Asuc_0178	-	aminoacyl-histidine dipeptidase
177	 52.07	+1	212545..213003	+	152	152977865	-	Asuc_0179	-	xanthine-guanine phosphoribosyltransferase
178	 53.05	+1	213061..213765	+	234	152977866	-	Asuc_0180	-	molybdate ABC transporter permease protein
179	 52.30	+1	213765..214460	+	231	152977867	-	Asuc_0181	-	molybdate ABC transporter, ATPase subunit
180	 50.82	+1	214525..216240	-	571	152977868	-	Asuc_0182	-	prolyl-tRNA synthetase
181	 48.70	0	216637..218094	+	485	152977869	-	Asuc_0183	-	anion transporter
182	 48.46	0	218202..219272	+	356	152977870	-	Asuc_0184	-	hypothetical protein
183	 49.79	0	219437..222043	-	868	152977871	-	Asuc_0185	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
184	 44.35	0	222162..222905	+	247	152977872	-	Asuc_0186	-	GntR family transcriptional regulator
185	 48.38	0	223172..223789	-	205	152977873	-	Asuc_0187	-	glutathione S-transferase domain-containing protein
186	 47.92	0	223802..225049	-	415	152977874	-	Asuc_0188	-	diaminopimelate decarboxylase
187	 44.87	0	225059..225214	-	51	152977875	-	Asuc_0189	-	hypothetical protein
188	 46.11	0	225225..225584	-	119	152977876	-	Asuc_0190	-	diacylglycerol kinase
189	 49.98	+1	225628..227850	-	740	152977877	-	Asuc_0191	-	(p)ppGpp synthetase I, SpoT/RelA
190	 50.53	+1	227863..229182	-	439	152977878	-	Asuc_0192	-	23S rRNA 5-methyluridine methyltransferase
191	 50.98	+1	229206..229919	-	237	152977879	-	Asuc_0193	-	DNA repair protein RecO
192	 40.00	-1	230137..230556	+	139	152977880	-	Asuc_0194	-	D-ribose pyranase
193	 41.38	0	230566..232068	+	500	152977881	-	Asuc_0195	-	D-ribose transporter ATP binding protein
194	 42.11	0	232078..233046	+	322	152977882	-	Asuc_0196	-	ribose ABC transporter permease protein
195	 44.71	0	233066..233944	+	292	152977883	-	Asuc_0197	-	D-ribose transporter subunit RbsB
196	 53.27	+1	234004..234936	+	310	152977884	-	Asuc_0198	-	ribokinase
197	 52.28	+1	234972..235979	+	335	152977885	-	Asuc_0199	-	periplasmic binding protein/LacI transcriptional regulator
198	 51.78	+1	236063..236794	+	243	152977886	-	Asuc_0200	-	hypothetical protein
199	 48.51	0	236806..237411	+	201	152977887	-	Asuc_0201	-	hypothetical protein
200	 55.56	+2	237411..237833	+	140	152977888	-	Asuc_0202	-	Holliday junction resolvase-like protein
201	 45.77	0	237942..239219	-	425	152977889	-	Asuc_0203	-	sn-glycerol-3-phosphate dehydrogenase subunit C
202	 51.97	+1	239221..240513	-	430	152977890	-	Asuc_0204	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
203	 51.01	+1	240503..242182	-	559	152977891	-	Asuc_0205	-	sn-glycerol-3-phosphate dehydrogenase subunit A
204	 42.61	0	242333..242623	-	96	152977892	-	Asuc_0206	-	antibiotic biosynthesis monooxygenase
205	 44.44	0	242700..245012	-	770	152977893	-	Asuc_0207	-	formate acetyltransferase
206	 46.74	0	245099..245956	-	285	152977894	-	Asuc_0208	-	formate/nitrite transporter
207	 49.72	0	246234..246587	+	117	152977895	-	Asuc_0209	-	histidine triad (HIT) protein
208	 46.89	0	246584..246937	+	117	152977896	-	Asuc_0210	-	hypothetical protein
209	 51.30	+1	246939..247979	+	346	152977897	-	Asuc_0211	-	beta-hexosaminidase
210	 48.61	0	248489..249640	+	383	152977898	-	Asuc_0212	-	23S rRNA methyluridine methyltransferase
211	 50.95	+1	249814..251022	-	402	152977899	-	Asuc_0213	-	mandelate racemase/muconate lactonizing protein
212	 49.78	0	251141..252064	+	307	152977900	-	Asuc_0214	-	LysR family transcriptional regulator
213	 45.70	0	252108..253013	-	301	152977901	-	Asuc_0215	-	LysR family transcriptional regulator
214	 46.71	0	253156..253596	+	146	152977902	-	Asuc_0216	-	hypothetical protein
215	 49.84	+1	253666..254307	-	213	152977903	-	Asuc_0217	-	lysine exporter protein LysE/YggA
216	 52.00	+1	254425..255099	+	224	152977904	-	Asuc_0218	-	ribulose-phosphate 3-epimerase
217	 50.07	+1	255108..255782	+	224	152977905	-	Asuc_0219	-	phosphoglycolate phosphatase
218	 47.06	0	255826..256830	+	334	152977906	-	Asuc_0220	-	tryptophanyl-tRNA synthetase
219	 45.64	0	257034..258650	-	538	152977907	-	Asuc_0221	-	phosphoenolpyruvate carboxykinase
220	 50.52	+1	258859..259725	-	288	152977908	-	Asuc_0222	-	Hsp33-like chaperonin
221	 49.64	0	259839..260249	-	136	152977909	-	Asuc_0223	-	RNA-binding S4 domain-containing protein
222	 48.94	0	260321..260884	+	187	152977910	-	Asuc_0224	-	ADP-ribose diphosphatase NudE
223	 49.80	+1	260931..261677	-	248	152977911	-	Asuc_0225	-	short-chain dehydrogenase/reductase SDR
224	 50.06	+1	261798..262610	+	270	152977912	-	Asuc_0226	-	3'(2'),5'-bisphosphate nucleotidase
225	 50.00	+1	262680..264167	+	495	152977913	-	Asuc_0227	-	glucose-6-phosphate 1-dehydrogenase
226	 49.57	0	264298..264999	+	233	152977914	-	Asuc_0228	-	6-phosphogluconolactonase
227	 42.95	0	265027..265473	+	148	152977915	-	Asuc_0229	-	hypothetical protein
228	 49.14	0	265512..266207	+	231	152977916	-	Asuc_0230	-	aspartate racemase
229	 47.35	0	266217..266480	+	87	152977917	-	Asuc_0231	-	hypothetical protein
230	 48.87	0	267356..268810	+	484	152977918	-	Asuc_0232	-	6-phosphogluconate dehydrogenase
231	 49.69	0	268926..269249	+	107	152977919	-	Asuc_0233	-	hypothetical protein
232	 47.33	0	269430..270122	-	230	152977920	-	Asuc_0234	-	L-ribulose-5-phosphate 4-epimerase
233	 43.44	0	270116..270976	-	286	152977921	-	Asuc_0235	-	putative L-xylulose 5-phosphate 3-epimerase
234	 42.30	0	271010..271756	-	248	152977922	-	Asuc_0236	-	transcriptional repressor UlaR
235	 47.71	0	271859..272950	-	363	152977923	-	Asuc_0237	-	putative L-ascorbate 6-phosphate lactonase
236	 47.43	0	273323..275095	+	590	152977924	-	Asuc_0238	-	ascorbate-specific PTS system enzyme IIC/IIB
237	 48.72	0	275166..275633	+	155	152977925	-	Asuc_0239	-	putative PTS IIA-like nitrogen-regulatory protein PtsN
238	 48.97	0	275696..276373	+	225	152977926	-	Asuc_0240	-	3-keto-L-gulonate-6-phosphate decarboxylase
239	 54.13	+2	277027..277728	-	233	152977927	-	Asuc_0242	-	peptidylprolyl isomerase FKBP-type
240	 46.92	0	277816..278514	-	232	152977928	-	Asuc_0243	-	hypothetical protein
241	 47.55	0	278720..279148	-	142	152977929	-	Asuc_0244	-	hypothetical protein
242	 44.96	0	279205..279591	-	128	152977930	-	Asuc_0245	-	large conductance mechanosensitive channel protein
243	 48.73	0	279672..281048	-	458	152977931	-	Asuc_0246	-	potassium transporter peripheral membrane component
244	 49.29	0	281225..281857	+	210	152977932	-	Asuc_0247	-	pyridoxamine 5'-phosphate oxidase
245	 41.67	0	281866..282117	+	83	152977933	-	Asuc_0248	-	hypothetical protein
246	 44.27	0	282228..282803	+	191	152977934	-	Asuc_0249	-	RNA polymerase sigma factor RpoE
247	 47.52	0	282826..283389	+	187	152977935	-	Asuc_0250	-	anti sigma-E protein, RseA
248	 44.20	0	283472..284428	+	318	152977936	-	Asuc_0251	-	periplasmic negative regulator of sigmaE
249	 51.03	+1	284444..284878	+	144	152977937	-	Asuc_0252	-	positive regulator of sigma E, RseC/MucC
250	 50.69	+1	284949..286331	-	460	152977938	-	Asuc_0253	-	argininosuccinate lyase
251	 49.22	0	286414..287187	-	257	152977939	-	Asuc_0254	-	acetylglutamate kinase
252	 48.96	0	287267..288277	-	336	152977940	-	Asuc_0255	-	N-acetyl-gamma-glutamyl-phosphate reductase
253	 49.17	0	288380..289522	+	380	152977941	-	Asuc_0256	-	acetylornithine deacetylase
254	 51.26	+1	289667..290581	-	304	152977942	-	Asuc_0257	-	N-acetylmuramic acid-6-phosphate etherase
255	 50.18	+1	290583..291692	-	369	152977943	-	Asuc_0258	-	anhydro-N-acetylmuramic acid kinase
256	 47.91	0	291748..293592	-	614	152977944	-	Asuc_0259	-	ABC transporter related
257	 42.50	0	293721..294200	-	159	152977945	-	Asuc_0260	-	recombination regulator RecX
258	 45.56	0	294358..295461	-	367	152977946	-	Asuc_0261	-	recombinase A
259	 43.48	0	295673..296539	-	288	152977947	-	Asuc_0262	-	DNA adenine methylase
260	 50.14	+1	296545..297633	-	362	152977948	-	Asuc_0263	-	3-dehydroquinate synthase
261	 45.08	0	297707..298234	-	175	152977949	-	Asuc_0264	-	shikimate kinase
262	 48.43	0	298524..300530	-	668	152977950	-	Asuc_0265	-	transketolase
263	 41.83	0	300974..301762	-	262	152977951	-	Asuc_0267	-	transcriptional regulator IclR
264	 46.75	0	301939..302937	+	332	152977952	-	Asuc_0268	-	2,3-diketo-L-gulonate reductase
265	 43.88	0	303040..303513	+	157	152977953	-	Asuc_0269	-	hypothetical protein
45.47	MEAN

4.33	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.