IslandPath Analysis: Actinobacillus succinogenes 130Z



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.47   STD DEV: 4.33
Actinobacillus succinogenes 130Z, complete genome - 1..2319663
2079 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1944	 45.89	0	2180550..2181497	-	315	152979632	-	Asuc_1979	-	magnesium/nickel/cobalt transporter CorA
1945	 47.97	0	2181841..2183172	-	443	152979633	-	Asuc_1980	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1946	 48.43	0	2183426..2184220	+	264	152979634	-	Asuc_1981	-	NADH pyrophosphatase
1947	 50.80	+1	2184320..2185384	+	354	152979635	-	Asuc_1982	-	uroporphyrinogen decarboxylase
1948	 39.83	-1	2185394..2185978	+	194	152979636	-	Asuc_1983	-	hypothetical protein
1949	 41.67	0	2186133..2186408	+	91	152979637	-	Asuc_1984	-	histone family protein DNA-binding protein
1950	 46.33	0	2186473..2187195	-	240	152979638	-	Asuc_1985	-	3-deoxy-D-manno-octulosonic-acid kinase
1951	 49.39	0	2187269..2188327	+	352	152979639	-	Asuc_1986	-	glycosyl transferase family protein
1952	 50.45	+1	2188343..2189002	-	219	152979640	-	Asuc_1987	-	pseudouridine synthase
1953	 51.84	+1	2189084..2190034	-	316	152979641	-	Asuc_1988	-	TRAP transporter solute receptor TAXI family protein
1954	 45.54	0	2190132..2190557	-	141	152979642	-	Asuc_1989	-	UspA domain-containing protein
1955	 48.28	0	2190567..2193209	-	880	152979643	-	Asuc_1990	-	TRAP transporter, 4TM/12TM fusion protein
1956	 47.87	0	2193360..2194322	-	320	152979644	-	Asuc_1991	-	TRAP transporter solute receptor TAXI family protein
1957	 48.60	0	2194658..2197558	-	966	152979645	-	Asuc_1992	-	ATP-dependent helicase HepA
1958	 43.94	0	2197770..2198495	+	241	152979646	-	Asuc_1993	-	nicotinamide mononucleotide transporter PnuC
1959	 44.86	0	2198560..2199123	-	187	152979647	-	Asuc_1994	-	hypothetical protein
1960	 44.44	0	2199236..2200405	-	389	152979648	-	Asuc_1995	-	Na+/H+ antiporter NhaA
1961	 41.79	0	2200636..2201451	+	271	152979649	-	Asuc_1996	-	Cof-like hydrolase
1962	 42.34	0	2202850..2204382	-	510	152979650	-	Asuc_1998	-	hypothetical protein
1963	 42.03	0	2204750..2206417	-	555	152979651	-	Asuc_1999	-	anaerobic c4-dicarboxylate antiporter
1964	 33.33	-2	2206648..2206878	-	76	152979652	-	Asuc_2000	-	acyl carrier protein
1965	 41.84	0	2207110..2207838	-	242	152979653	-	Asuc_2001	-	3-ketoacyl-(acyl-carrier-protein) reductase
1966	 47.60	0	2207958..2208896	-	312	152979654	-	Asuc_2002	-	malonyl CoA-acyl carrier protein transacylase
1967	 43.95	0	2208969..2209919	-	316	152979655	-	Asuc_2003	-	3-oxoacyl-(acyl-carrier-protein) synthase III
1968	 42.95	0	2209946..2210974	-	342	152979656	-	Asuc_2004	-	putative glycerol-3-phosphate acyltransferase PlsX
1969	 43.27	0	2210999..2211169	-	56	152979657	-	Asuc_2005	-	50S ribosomal protein L32
1970	 41.14	0	2211191..2211715	-	174	152979658	-	Asuc_2006	-	hypothetical protein
1971	 43.39	0	2212097..2213458	-	453	152979659	-	Asuc_2007	-	phosphatidylserine synthase
1972	 48.99	0	2213563..2214648	+	361	152979660	-	Asuc_2008	-	tRNA/rRNA methyltransferase (SpoU)
1973	 45.75	0	2214707..2215423	-	238	152979661	-	Asuc_2009	-	hypothetical protein
1974	 49.37	0	2215625..2216422	-	265	152979662	-	Asuc_2010	-	TonB family protein
1975	 38.76	-1	2216423..2216809	-	128	152979663	-	Asuc_2011	-	TonB system transport protein ExbD type-2
1976	 41.67	0	2216822..2217277	-	151	152979664	-	Asuc_2012	-	TonB-system energizer ExbB type-2
1977	 52.12	+1	2217506..2218543	+	345	152979665	-	Asuc_2013	-	metalloendopeptidase glycoprotease family
1978	 48.46	0	2218706..2221276	+	856	152979666	-	Asuc_2014	-	ATPase
1979	 46.96	0	2221401..2222075	+	224	152979667	-	Asuc_2015	-	deoxyribose-phosphate aldolase
1980	 51.55	+1	2222381..2223220	-	279	152979668	-	Asuc_2016	-	protein of unknown function zinc metallopeptidase putative
1981	 46.75	0	2223387..2224094	+	235	152979669	-	Asuc_2017	-	exsB protein
1982	 44.05	0	2224097..2224516	+	139	152979670	-	Asuc_2018	-	putative 6-pyruvoyl tetrahydropterin synthase
1983	 44.18	0	2224513..2225139	+	208	152979671	-	Asuc_2019	-	radical SAM domain-containing protein
1984	 45.83	0	2225149..2225556	-	135	152979672	-	Asuc_2020	-	mutator MutT protein
1985	 47.82	0	2225623..2228370	-	915	152979673	-	Asuc_2021	-	preprotein translocase subunit SecA
1986	 47.52	0	2228479..2228781	-	100	152979674	-	Asuc_2022	-	hypothetical protein
1987	 39.04	-1	2228891..2229223	+	110	152979675	-	Asuc_2023	-	hypothetical protein
1988	 46.90	0	2229255..2230625	-	456	152979676	-	Asuc_2024	-	glutathione reductase
1989	 44.99	0	2230776..2231384	-	202	152979677	-	Asuc_2025	-	hypothetical protein
1990	 46.70	0	2231396..2232667	-	423	152979678	-	Asuc_2026	-	histidyl-tRNA synthetase
1991	 48.48	0	2232740..2233855	-	371	152979679	-	Asuc_2027	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1992	 43.98	0	2233861..2234799	-	312	152979680	-	Asuc_2028	-	helix-turn-helix domain-containing protein
1993	 42.41	0	2234893..2235432	-	179	152979681	-	Asuc_2029	-	type IV pilus biogenesis/stability protein PilW
1994	 46.68	0	2235453..2236568	-	371	152979682	-	Asuc_2030	-	hypothetical protein
1995	 49.27	0	2236856..2237332	-	158	152979683	-	Asuc_2031	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
1996	 49.02	0	2237342..2238055	-	237	152979684	-	Asuc_2032	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
1997	 38.35	-1	2238055..2238333	-	92	152979685	-	Asuc_2033	-	cell division protein FtsB
1998	 47.09	0	2238451..2239068	-	205	152979686	-	Asuc_2034	-	NapC/NirT family periplasmic nitrate (or nitrite) reductase c-type cytochrome
1999	 50.00	+1	2239080..2239511	-	143	152979687	-	Asuc_2035	-	nitrate reductase cytochrome c-type subunit (NapB)
2000	 46.93	0	2239564..2240460	-	298	152979688	-	Asuc_2036	-	quinol dehydrogenase membrane component
2001	 49.78	0	2240460..2241365	-	301	152979689	-	Asuc_2037	-	quinol dehydrogenase periplasmic component
2002	 47.48	0	2241507..2243987	-	826	152979690	-	Asuc_2038	-	nitrate reductase
2003	 38.64	-1	2244021..2244284	-	87	152979691	-	Asuc_2039	-	NapD family protein
2004	 50.37	+1	2244277..2244810	-	177	152979692	-	Asuc_2040	-	ferredoxin-type protein NapF
2005	 45.13	0	2244959..2246314	-	451	152979693	-	Asuc_2041	-	patatin
2006	 43.43	0	2246474..2246770	-	98	152979694	-	Asuc_2042	-	hypothetical protein
2007	 41.16	0	2246779..2247072	-	97	152979695	-	Asuc_2043	-	hypothetical protein
2008	 46.85	0	2247168..2248232	+	354	152979696	-	Asuc_2044	-	hypothetical protein
2009	 44.03	0	2248330..2248731	-	133	152979697	-	Asuc_2045	-	hypothetical protein
2010	 43.44	0	2248740..2249372	-	210	152979698	-	Asuc_2046	-	NUDIX hydrolase
2011	 34.65	-2	2249490..2250785	-	431	152979699	-	Asuc_2047	-	hypothetical protein
2012	 41.17	0	2250824..2251423	-	199	152979700	-	Asuc_2048	-	hypothetical protein
2013	 36.21	-2	2251437..2251853	-	138	152979701	-	Asuc_2049	-	hypothetical protein
2014	 38.26	-1	2252008..2252352	+	114	152979702	-	Asuc_2050	-	XRE family transcriptional regulator
2015	 44.93	0	2252426..2253727	-	433	152979703	-	Asuc_2051	-	phosphopyruvate hydratase
2016	 46.84	0	2253833..2255461	-	542	152979704	-	Asuc_2052	-	CTP synthetase
2017	 50.40	+1	2255661..2256668	+	335	152979705	-	Asuc_2053	-	tRNA pseudouridine synthase D
2018	 47.01	0	2256919..2258322	+	467	152979706	-	Asuc_2054	-	cytochrome-c peroxidase
2019	 45.43	0	2258514..2258918	+	134	152979707	-	Asuc_2055	-	MerR family transcriptional regulator
2020	 48.59	0	2258991..2260301	-	436	152979708	-	Asuc_2056	-	major facilitator transporter
2021	 43.32	0	2260403..2261083	-	226	152979709	-	Asuc_2057	-	hypothetical protein
2022	 46.58	0	2261533..2263284	+	583	152979710	-	Asuc_2058	-	putative sulfate transporter YchM
2023	 47.35	0	2263372..2265219	-	615	152979711	-	Asuc_2059	-	DEAD/DEAH box helicase domain-containing protein
2024	 42.35	0	2265421..2266374	-	317	152979712	-	Asuc_2060	-	lipoprotein NlpI
2025	 49.39	0	2266456..2268579	-	707	152979713	-	Asuc_2061	-	polynucleotide phosphorylase/polyadenylase
2026	 44.86	0	2268847..2269323	+	158	152979714	-	Asuc_2062	-	hypothetical protein
2027	 49.22	0	2269417..2271795	+	792	152979715	-	Asuc_2063	-	ribonuclease R
2028	 53.66	+1	2271929..2272666	+	245	152979716	-	Asuc_2064	-	23S rRNA (guanosine-2'-O-)-methyltransferase
2029	 47.29	0	2272699..2273307	+	202	152979717	-	Asuc_2065	-	thymidine kinase
2030	 36.43	-2	2273412..2273540	+	42	152979718	-	Asuc_2066	-	entericidin EcnAB
2031	 50.42	+1	2273620..2275638	-	672	152979719	-	Asuc_2067	-	NAD-dependent DNA ligase LigA
2032	 51.65	+1	2275719..2276750	-	343	152979720	-	Asuc_2068	-	cell division protein ZipA
2033	 45.10	0	2276916..2277773	+	285	152979721	-	Asuc_2069	-	putative sulfate transport protein CysZ
2034	 46.05	0	2277815..2278522	-	235	152979722	-	Asuc_2070	-	UDP-2,3-diacylglucosamine hydrolase
2035	 46.14	0	2278634..2279359	+	241	152979723	-	Asuc_2071	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
2036	 48.39	0	2279363..2280763	+	466	152979724	-	Asuc_2072	-	multicopper oxidase type 3
2037	 55.21	+2	2280896..2281279	+	127	152979725	-	Asuc_2073	-	carboxymuconolactone decarboxylase
2038	 58.52	+2	2281276..2282085	+	269	152979726	-	Asuc_2074	-	serine/threonine-protein kinase
2039	 55.27	+2	2282417..2283241	-	274	152979727	-	Asuc_2075	-	O-methyltransferase domain-containing protein
2040	 43.30	0	2283459..2284010	-	183	152979728	-	Asuc_2076	-	hypothetical protein
2041	 54.26	+2	2284247..2284915	-	222	152979729	-	Asuc_2077	-	phospholipase/carboxylesterase
2042	 52.19	+1	2284915..2285598	-	227	152979730	-	Asuc_2078	-	DSBA oxidoreductase
2043	 50.74	+1	2285713..2286051	+	112	152979731	-	Asuc_2079	-	HxlR family transcriptional regulator
45.47	MEAN

4.33	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.