IslandPathversion 1.0

IslandPath Analysis: Actinobacillus succinogenes 130Z



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.47 STD DEV: 4.33
Actinobacillus succinogenes 130Z, complete genome - 1..2319663
2079 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1881	 47.86	0	2107200..2107922	-	240	152979569	-	Asuc_1915	-	cytochrome c-type protein TorY
1882	 50.36	+1	2108175..2110505	-	776	152979570	-	Asuc_1916	-	trimethylamine-N-oxide reductase (cytochrome c)
1883	 40.18	-1	2110656..2110874	+	72	152979571	-	Asuc_1917	-	translation initiation factor IF-1
1884	 47.98	0	2110926..2112461	-	511	152979572	-	Asuc_1918	-	apolipoprotein N-acyltransferase
1885	 44.70	0	2112567..2113472	-	301	152979573	-	Asuc_1919	-	CBS domain-containing protein
1886	 43.15	0	2113635..2113970	+	111	152979574	-	Asuc_1920	-	alkylphosphonate utilization operon protein PhnA
1887	 43.58	0	2114099..2115415	-	438	152979575	-	Asuc_1921	-	TRAP dicarboxylate transporter, DctM subunit
1888	 39.43	-1	2115415..2115906	-	163	152979576	-	Asuc_1922	-	tripartite ATP-independent periplasmic transporter DctQ
1889	 37.59	-1	2116008..2116994	-	328	152979577	-	Asuc_1923	-	TRAP dicarboxylate transporter, DctP subunit
1890	 43.58	0	2117237..2118397	-	386	152979578	-	Asuc_1924	-	chorismate mutase
1891	 43.06	0	2118440..2120095	-	551	152979579	-	Asuc_1925	-	bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor
1892	 42.70	0	2120161..2121078	-	305	152979580	-	Asuc_1926	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
1893	 46.37	0	2121122..2122333	-	403	152979581	-	Asuc_1927	-	cell division protein FtsZ
1894	 44.08	0	2122416..2123708	-	430	152979582	-	Asuc_1928	-	cell division protein FtsA
1895	 40.47	-1	2123719..2124489	-	256	152979583	-	Asuc_1929	-	cell division protein FtsQ
1896	 45.78	0	2124489..2125412	-	307	152979584	-	Asuc_1930	-	D-alanine--D-alanine ligase
1897	 47.59	0	2125499..2126929	-	476	152979585	-	Asuc_1931	-	UDP-N-acetylmuramate--L-alanine ligase
1898	 46.29	0	2127036..2128100	-	354	152979586	-	Asuc_1932	-	N-acetylglucosaminyl transferase
1899	 42.40	0	2128119..2129309	-	396	152979587	-	Asuc_1933	-	cell division protein FtsW
1900	 45.97	0	2129323..2130636	-	437	152979588	-	Asuc_1934	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1901	 44.14	0	2130674..2131756	-	360	152979589	-	Asuc_1935	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1902	 46.78	0	2131763..2133205	-	480	152979590	-	Asuc_1936	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
1903	 47.65	0	2133206..2134672	-	488	152979591	-	Asuc_1937	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1904	 46.32	0	2134681..2136543	-	620	152979592	-	Asuc_1938	-	peptidoglycan glycosyltransferase
1905	 39.64	-1	2136543..2136875	-	110	152979593	-	Asuc_1939	-	cell division protein FtsL
1906	 47.83	0	2136875..2137840	-	321	152979594	-	Asuc_1940	-	S-adenosyl-methyltransferase MraW
1907	 45.53	0	2137984..2138442	-	152	152979595	-	Asuc_1941	-	cell division protein MraZ
1908	 45.36	0	2138672..2140192	-	506	152979596	-	Asuc_1942	-	carbon starvation protein CstA
1909	 43.86	0	2140318..2140488	-	56	152979597	-	Asuc_1943	-	hypothetical protein
1910	 47.20	0	2140531..2142384	-	617	152979598	-	Asuc_1944	-	protein of unknown function DUF699 ATPase putative
1911	 49.04	0	2142381..2142851	-	156	152979599	-	Asuc_1945	-	putative metalloprotease
1912	 44.14	0	2143146..2144228	-	360	152979600	-	Asuc_1946	-	PhoH family protein
1913	 47.32	0	2144393..2146672	-	759	152979601	-	Asuc_1947	-	bifunctional glutamate--cysteine ligase/glutathione synthetase
1914	 45.33	0	2146813..2147679	-	288	152979602	-	Asuc_1948	-	extracellular solute-binding protein
1915	 44.71	0	2147663..2148427	-	254	152979603	-	Asuc_1949	-	ABC transporter related
1916	 46.04	0	2148433..2149101	-	222	152979604	-	Asuc_1950	-	polar amino acid ABC transporter, inner membrane subunit
1917	 44.85	0	2149103..2149762	-	219	152979605	-	Asuc_1951	-	polar amino acid ABC transporter, inner membrane subunit
1918	 47.86	0	2149920..2151344	-	474	152979606	-	Asuc_1952	-	tRNA-i(6)A37 thiotransferase enzyme MiaB
1919	 43.81	0	2151994..2152995	+	333	152979607	-	Asuc_1953	-	4-hydroxythreonine-4-phosphate dehydrogenase
1920	 37.77	-1	2153014..2153892	+	292	152979608	-	Asuc_1954	-	dihydrodipicolinate synthase
1921	 37.82	-1	2153918..2155075	+	385	152979609	-	Asuc_1955	-	iron-containing alcohol dehydrogenase
1922	 36.87	-1	2155294..2156283	+	329	152979610	-	Asuc_1956	-	TRAP transporter solute receptor TAXI family protein
1923	 36.88	-1	2156342..2158228	+	628	152979611	-	Asuc_1957	-	TRAP transporter, 4TM/12TM fusion protein
1924	 39.16	-1	2159191..2160597	+	468	152979612	-	Asuc_1959	-	Na+ symporter
1925	 41.16	0	2160615..2161802	+	395	152979613	-	Asuc_1960	-	glycosyl hydrolase BNR repeat-containing glycosyl hydrolase
1926	 39.57	-1	2161853..2162317	+	154	152979614	-	Asuc_1961	-	hypothetical protein
1927	 46.39	0	2162616..2163641	-	341	152979615	-	Asuc_1962	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1928	 41.58	0	2163663..2164220	-	185	152979616	-	Asuc_1963	-	outer membrane chaperone Skp (OmpH)
1929	 46.83	0	2164322..2166685	-	787	152979617	-	Asuc_1964	-	surface antigen (D15)
1930	 47.71	0	2166730..2168058	-	442	152979618	-	Asuc_1965	-	putative membrane-associated zinc metalloprotease
1931	 46.25	0	2168068..2168934	-	288	152979619	-	Asuc_1966	-	phosphatidate cytidylyltransferase
1932	 45.00	0	2168947..2169666	-	239	152979620	-	Asuc_1967	-	undecaprenyl diphosphate synthase
1933	 50.30	+1	2169920..2170744	+	274	152979621	-	Asuc_1968	-	diaminopimelate epimerase
1934	 42.14	0	2170784..2171476	+	230	152979622	-	Asuc_1969	-	hypothetical protein
1935	 46.74	0	2171723..2173318	+	531	152979623	-	Asuc_1970	-	L-lactate transport
1936	 47.64	0	2173375..2174115	+	246	152979624	-	Asuc_1971	-	hypothetical protein
1937	 47.98	0	2174117..2175529	+	470	152979625	-	Asuc_1972	-	iron-sulfur cluster binding protein
1938	 50.93	+1	2175529..2176227	+	232	152979626	-	Asuc_1973	-	hypothetical protein
1939	 50.45	+1	2176367..2177254	+	295	152979627	-	Asuc_1974	-	site-specific tyrosine recombinase XerC
1940	 46.55	0	2177260..2177970	+	236	152979628	-	Asuc_1975	-	HAD family hydrolase
1941	 50.18	+1	2178059..2179417	-	452	152979629	-	Asuc_1976	-	tRNA modification GTPase TrmE
1942	 46.80	0	2179534..2179830	-	98	152979630	-	Asuc_1977	-	hypothetical protein
1943	 46.35	0	2179872..2180447	-	191	152979631	-	Asuc_1978	-	protein of unknown function YGGT
1944	 45.89	0	2180550..2181497	-	315	152979632	-	Asuc_1979	-	magnesium/nickel/cobalt transporter CorA
1945	 47.97	0	2181841..2183172	-	443	152979633	-	Asuc_1980	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1946	 48.43	0	2183426..2184220	+	264	152979634	-	Asuc_1981	-	NADH pyrophosphatase
1947	 50.80	+1	2184320..2185384	+	354	152979635	-	Asuc_1982	-	uroporphyrinogen decarboxylase
1948	 39.83	-1	2185394..2185978	+	194	152979636	-	Asuc_1983	-	hypothetical protein
1949	 41.67	0	2186133..2186408	+	91	152979637	-	Asuc_1984	-	histone family protein DNA-binding protein
1950	 46.33	0	2186473..2187195	-	240	152979638	-	Asuc_1985	-	3-deoxy-D-manno-octulosonic-acid kinase
1951	 49.39	0	2187269..2188327	+	352	152979639	-	Asuc_1986	-	glycosyl transferase family protein
1952	 50.45	+1	2188343..2189002	-	219	152979640	-	Asuc_1987	-	pseudouridine synthase
1953	 51.84	+1	2189084..2190034	-	316	152979641	-	Asuc_1988	-	TRAP transporter solute receptor TAXI family protein
1954	 45.54	0	2190132..2190557	-	141	152979642	-	Asuc_1989	-	UspA domain-containing protein
1955	 48.28	0	2190567..2193209	-	880	152979643	-	Asuc_1990	-	TRAP transporter, 4TM/12TM fusion protein
1956	 47.87	0	2193360..2194322	-	320	152979644	-	Asuc_1991	-	TRAP transporter solute receptor TAXI family protein
1957	 48.60	0	2194658..2197558	-	966	152979645	-	Asuc_1992	-	ATP-dependent helicase HepA
1958	 43.94	0	2197770..2198495	+	241	152979646	-	Asuc_1993	-	nicotinamide mononucleotide transporter PnuC
1959	 44.86	0	2198560..2199123	-	187	152979647	-	Asuc_1994	-	hypothetical protein
1960	 44.44	0	2199236..2200405	-	389	152979648	-	Asuc_1995	-	Na+/H+ antiporter NhaA
1961	 41.79	0	2200636..2201451	+	271	152979649	-	Asuc_1996	-	Cof-like hydrolase
1962	 42.34	0	2202850..2204382	-	510	152979650	-	Asuc_1998	-	hypothetical protein
1963	 42.03	0	2204750..2206417	-	555	152979651	-	Asuc_1999	-	anaerobic c4-dicarboxylate antiporter
1964	 33.33	-2	2206648..2206878	-	76	152979652	-	Asuc_2000	-	acyl carrier protein
1965	 41.84	0	2207110..2207838	-	242	152979653	-	Asuc_2001	-	3-ketoacyl-(acyl-carrier-protein) reductase
1966	 47.60	0	2207958..2208896	-	312	152979654	-	Asuc_2002	-	malonyl CoA-acyl carrier protein transacylase
1967	 43.95	0	2208969..2209919	-	316	152979655	-	Asuc_2003	-	3-oxoacyl-(acyl-carrier-protein) synthase III
1968	 42.95	0	2209946..2210974	-	342	152979656	-	Asuc_2004	-	putative glycerol-3-phosphate acyltransferase PlsX
1969	 43.27	0	2210999..2211169	-	56	152979657	-	Asuc_2005	-	50S ribosomal protein L32
1970	 41.14	0	2211191..2211715	-	174	152979658	-	Asuc_2006	-	hypothetical protein
1971	 43.39	0	2212097..2213458	-	453	152979659	-	Asuc_2007	-	phosphatidylserine synthase
1972	 48.99	0	2213563..2214648	+	361	152979660	-	Asuc_2008	-	tRNA/rRNA methyltransferase (SpoU)
1973	 45.75	0	2214707..2215423	-	238	152979661	-	Asuc_2009	-	hypothetical protein
1974	 49.37	0	2215625..2216422	-	265	152979662	-	Asuc_2010	-	TonB family protein
1975	 38.76	-1	2216423..2216809	-	128	152979663	-	Asuc_2011	-	TonB system transport protein ExbD type-2
1976	 41.67	0	2216822..2217277	-	151	152979664	-	Asuc_2012	-	TonB-system energizer ExbB type-2
1977	 52.12	+1	2217506..2218543	+	345	152979665	-	Asuc_2013	-	metalloendopeptidase glycoprotease family
1978	 48.46	0	2218706..2221276	+	856	152979666	-	Asuc_2014	-	ATPase
1979	 46.96	0	2221401..2222075	+	224	152979667	-	Asuc_2015	-	deoxyribose-phosphate aldolase
1980	 51.55	+1	2222381..2223220	-	279	152979668	-	Asuc_2016	-	protein of unknown function zinc metallopeptidase putative
45.47	MEAN

4.33	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.