IslandPathversion 1.0

IslandPath Analysis: Actinobacillus succinogenes 130Z



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.47 STD DEV: 4.33
Actinobacillus succinogenes 130Z, complete genome - 1..2319663
2079 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1820	 45.65	0	2035813..2037306	+	497	152979508	-	Asuc_1851	-	hypothetical protein
1821	 47.53	0	2037376..2038713	+	445	152979509	-	Asuc_1852	-	mandelate racemase/muconate lactonizing protein
1822	 45.31	0	2038774..2039625	+	283	152979510	-	Asuc_1853	-	aldo/keto reductase
1823	 46.88	0	2039825..2040931	+	368	152979511	-	Asuc_1854	-	SMP-30/gluconolaconase/LRE domain-containing protein
1824	 49.58	0	2041180..2042736	+	518	152979512	-	Asuc_1855	-	galactarate dehydratase
1825	 42.10	0	2042798..2043949	-	383	152979513	-	Asuc_1856	-	carbohydrate diacid transcriptional activator CdaR
1826	 46.61	0	2043962..2045098	-	378	152979514	-	Asuc_1857	-	glycerate kinase
1827	 46.17	0	2045227..2046114	-	295	152979515	-	Asuc_1858	-	tartronate semialdehyde reductase
1828	 44.36	0	2046157..2046927	-	256	152979516	-	Asuc_1859	-	alpha-dehydro-beta-deoxy-D-glucarate aldolase
1829	 43.78	0	2047177..2048085	+	302	152979517	-	Asuc_1860	-	recombination associated protein
1830	 43.72	0	2048112..2048804	-	230	152979518	-	Asuc_1861	-	chromosomal replication initiator DnaA
1831	 47.17	0	2048809..2052285	-	1158	152979519	-	Asuc_1862	-	DNA polymerase III subunit alpha
1832	 46.08	0	2052339..2053640	-	433	152979520	-	Asuc_1863	-	hypothetical protein
1833	 43.18	0	2053653..2054180	-	175	152979521	-	Asuc_1864	-	hypothetical protein
1834	 48.15	0	2054267..2055049	-	260	152979522	-	Asuc_1865	-	TatD family hydrolase
1835	 47.60	0	2055098..2056099	-	333	152979523	-	Asuc_1866	-	DNA polymerase III subunit delta'
1836	 52.13	+1	2056092..2056724	-	210	152979524	-	Asuc_1867	-	thymidylate kinase
1837	 45.20	0	2056810..2057871	-	353	152979525	-	Asuc_1868	-	aminodeoxychorismate lyase
1838	 48.02	0	2057982..2059220	-	412	152979526	-	Asuc_1869	-	D-3-phosphoglycerate dehydrogenase
1839	 49.70	0	2059321..2059980	-	219	152979527	-	Asuc_1870	-	ribose-5-phosphate isomerase A
1840	 48.47	0	2060192..2061367	-	391	152979528	-	Asuc_1871	-	coproporphyrinogen III oxidase
1841	 49.17	0	2061372..2061971	-	199	152979529	-	Asuc_1872	-	putative deoxyribonucleotide triphosphate pyrophosphatase
1842	 46.49	0	2062087..2062428	-	113	152979530	-	Asuc_1873	-	helix-hairpin-helix repeat-containing competence protein ComEA
1843	 50.37	+1	2062627..2063571	-	314	152979531	-	Asuc_1874	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
1844	 42.89	0	2063568..2064059	-	163	152979532	-	Asuc_1875	-	lipoprotein signal peptidase
1845	 47.82	0	2064270..2067017	-	915	152979533	-	Asuc_1876	-	isoleucyl-tRNA synthetase
1846	 47.69	0	2067123..2068076	-	317	152979534	-	Asuc_1877	-	bifunctional riboflavin kinase/FMN adenylyltransferase
1847	 51.25	+1	2068299..2069018	-	239	152979535	-	Asuc_1878	-	nitroreductase A
1848	 49.70	0	2069168..2071996	-	942	152979536	-	Asuc_1879	-	excinuclease ABC subunit A
1849	 50.83	+1	2072148..2072627	+	159	152979537	-	Asuc_1880	-	single-strand binding protein
1850	 48.42	0	2074125..2074727	-	200	152979538	-	Asuc_1883	-	putative glycerol-3-phosphate acyltransferase PlsY
1851	 42.42	0	2074830..2075192	+	120	152979539	-	Asuc_1884	-	dihydroneopterin aldolase
1852	 42.01	0	2075233..2075958	-	241	152979540	-	Asuc_1885	-	fatty acid metabolism regulator
1853	 46.08	0	2076108..2077676	+	522	152979541	-	Asuc_1886	-	sodium/proton antiporter
1854	 44.69	0	2077699..2078235	+	178	152979542	-	Asuc_1887	-	disulphide bond formation protein DsbB
1855	 45.30	0	2078284..2079336	-	350	152979543	-	Asuc_1888	-	hypothetical protein
1856	 43.92	0	2079424..2079801	-	125	152979544	-	Asuc_1889	-	cytochrome b562
1857	 44.54	0	2079829..2080167	-	112	152979545	-	Asuc_1890	-	nitrogen regulatory protein P-II
1858	 50.34	+1	2080218..2080811	-	197	152979546	-	Asuc_1891	-	molybdenum cofactor biosynthesis protein
1859	 51.89	+1	2080827..2081435	-	202	152979547	-	Asuc_1892	-	ribonuclease HII
1860	 48.55	0	2081450..2082619	-	389	152979548	-	Asuc_1893	-	lipid-A-disaccharide synthase
1861	 50.44	+1	2082682..2083470	-	262	152979549	-	Asuc_1894	-	UDP-N-acetylglucosamine acyltransferase
1862	 45.70	0	2083483..2083935	-	150	152979550	-	Asuc_1895	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
1863	 46.83	0	2084096..2085103	-	335	152979551	-	Asuc_1896	-	beta-methylgalactoside transporter inner membrane component
1864	 44.31	0	2085116..2086627	-	503	152979552	-	Asuc_1897	-	galactose/methyl galaxtoside transporter ATP-binding protein
1865	 42.30	0	2086697..2087689	-	330	152979553	-	Asuc_1898	-	periplasmic binding protein/LacI transcriptional regulator
1866	 48.18	0	2088045..2089088	+	347	152979554	-	Asuc_1899	-	galactose-1-phosphate uridylyltransferase
1867	 50.26	+1	2089601..2090758	+	385	152979555	-	Asuc_1900	-	galactokinase
1868	 49.42	0	2090752..2091783	+	343	152979556	-	Asuc_1901	-	aldose 1-epimerase
1869	 49.62	0	2091827..2093134	-	435	152979557	-	Asuc_1902	-	uracil-xanthine permease
1870	 49.26	0	2093261..2093932	-	223	152979558	-	Asuc_1903	-	DNA mismatch repair protein
1871	 51.11	+1	2093981..2094520	-	179	152979559	-	Asuc_1904	-	methylated-DNA--protein-cysteine methyltransferase
1872	 47.51	0	2094569..2095873	-	434	152979560	-	Asuc_1905	-	membrane protein involved in aromatic hydrocarbon degradation
1873	 46.68	0	2096704..2098254	+	516	152979561	-	Asuc_1907	-	2-isopropylmalate synthase
1874	 47.08	0	2098436..2099512	+	358	152979562	-	Asuc_1908	-	3-isopropylmalate dehydrogenase
1875	 48.65	0	2099659..2101068	+	469	152979563	-	Asuc_1909	-	isopropylmalate isomerase large subunit
1876	 45.11	0	2101158..2101760	+	200	152979564	-	Asuc_1910	-	isopropylmalate isomerase small subunit
1877	 42.54	0	2101915..2102403	-	162	152979565	-	Asuc_1911	-	rod shape-determining protein MreD
1878	 45.55	0	2102403..2103458	-	351	152979566	-	Asuc_1912	-	rod shape-determining protein MreC
1879	 49.71	0	2103524..2104573	-	349	152979567	-	Asuc_1913	-	cell shape determining protein MreB
1880	 49.53	0	2104720..2107188	-	822	152979568	-	Asuc_1914	-	molybdopterin guanine dinucleotide-containing S/N-oxide reductase
1881	 47.86	0	2107200..2107922	-	240	152979569	-	Asuc_1915	-	cytochrome c-type protein TorY
1882	 50.36	+1	2108175..2110505	-	776	152979570	-	Asuc_1916	-	trimethylamine-N-oxide reductase (cytochrome c)
1883	 40.18	-1	2110656..2110874	+	72	152979571	-	Asuc_1917	-	translation initiation factor IF-1
1884	 47.98	0	2110926..2112461	-	511	152979572	-	Asuc_1918	-	apolipoprotein N-acyltransferase
1885	 44.70	0	2112567..2113472	-	301	152979573	-	Asuc_1919	-	CBS domain-containing protein
1886	 43.15	0	2113635..2113970	+	111	152979574	-	Asuc_1920	-	alkylphosphonate utilization operon protein PhnA
1887	 43.58	0	2114099..2115415	-	438	152979575	-	Asuc_1921	-	TRAP dicarboxylate transporter, DctM subunit
1888	 39.43	-1	2115415..2115906	-	163	152979576	-	Asuc_1922	-	tripartite ATP-independent periplasmic transporter DctQ
1889	 37.59	-1	2116008..2116994	-	328	152979577	-	Asuc_1923	-	TRAP dicarboxylate transporter, DctP subunit
1890	 43.58	0	2117237..2118397	-	386	152979578	-	Asuc_1924	-	chorismate mutase
1891	 43.06	0	2118440..2120095	-	551	152979579	-	Asuc_1925	-	bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor
1892	 42.70	0	2120161..2121078	-	305	152979580	-	Asuc_1926	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
1893	 46.37	0	2121122..2122333	-	403	152979581	-	Asuc_1927	-	cell division protein FtsZ
1894	 44.08	0	2122416..2123708	-	430	152979582	-	Asuc_1928	-	cell division protein FtsA
1895	 40.47	-1	2123719..2124489	-	256	152979583	-	Asuc_1929	-	cell division protein FtsQ
1896	 45.78	0	2124489..2125412	-	307	152979584	-	Asuc_1930	-	D-alanine--D-alanine ligase
1897	 47.59	0	2125499..2126929	-	476	152979585	-	Asuc_1931	-	UDP-N-acetylmuramate--L-alanine ligase
1898	 46.29	0	2127036..2128100	-	354	152979586	-	Asuc_1932	-	N-acetylglucosaminyl transferase
1899	 42.40	0	2128119..2129309	-	396	152979587	-	Asuc_1933	-	cell division protein FtsW
1900	 45.97	0	2129323..2130636	-	437	152979588	-	Asuc_1934	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1901	 44.14	0	2130674..2131756	-	360	152979589	-	Asuc_1935	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1902	 46.78	0	2131763..2133205	-	480	152979590	-	Asuc_1936	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
1903	 47.65	0	2133206..2134672	-	488	152979591	-	Asuc_1937	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1904	 46.32	0	2134681..2136543	-	620	152979592	-	Asuc_1938	-	peptidoglycan glycosyltransferase
1905	 39.64	-1	2136543..2136875	-	110	152979593	-	Asuc_1939	-	cell division protein FtsL
1906	 47.83	0	2136875..2137840	-	321	152979594	-	Asuc_1940	-	S-adenosyl-methyltransferase MraW
1907	 45.53	0	2137984..2138442	-	152	152979595	-	Asuc_1941	-	cell division protein MraZ
1908	 45.36	0	2138672..2140192	-	506	152979596	-	Asuc_1942	-	carbon starvation protein CstA
1909	 43.86	0	2140318..2140488	-	56	152979597	-	Asuc_1943	-	hypothetical protein
1910	 47.20	0	2140531..2142384	-	617	152979598	-	Asuc_1944	-	protein of unknown function DUF699 ATPase putative
1911	 49.04	0	2142381..2142851	-	156	152979599	-	Asuc_1945	-	putative metalloprotease
1912	 44.14	0	2143146..2144228	-	360	152979600	-	Asuc_1946	-	PhoH family protein
1913	 47.32	0	2144393..2146672	-	759	152979601	-	Asuc_1947	-	bifunctional glutamate--cysteine ligase/glutathione synthetase
1914	 45.33	0	2146813..2147679	-	288	152979602	-	Asuc_1948	-	extracellular solute-binding protein
1915	 44.71	0	2147663..2148427	-	254	152979603	-	Asuc_1949	-	ABC transporter related
1916	 46.04	0	2148433..2149101	-	222	152979604	-	Asuc_1950	-	polar amino acid ABC transporter, inner membrane subunit
1917	 44.85	0	2149103..2149762	-	219	152979605	-	Asuc_1951	-	polar amino acid ABC transporter, inner membrane subunit
1918	 47.86	0	2149920..2151344	-	474	152979606	-	Asuc_1952	-	tRNA-i(6)A37 thiotransferase enzyme MiaB
1919	 43.81	0	2151994..2152995	+	333	152979607	-	Asuc_1953	-	4-hydroxythreonine-4-phosphate dehydrogenase
45.47	MEAN

4.33	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.