IslandPathversion 1.0

IslandPath Analysis: Actinobacillus succinogenes 130Z



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.47 STD DEV: 4.33
Actinobacillus succinogenes 130Z, complete genome - 1..2319663
2079 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1764	 41.78	0	1973679..1974104	-	141	152979452	-	Asuc_1795	-	Pol-Pal system-associated acyl-CoA thioesterase
1765	 43.18	0	1974415..1975551	-	378	152979453	-	Asuc_1796	-	cytochrome d ubiquinol oxidase, subunit II
1766	 43.51	0	1975565..1977127	-	520	152979454	-	Asuc_1797	-	cytochrome bd ubiquinol oxidase subunit I
1767	 36.48	-2	1977551..1977868	+	105	152979455	-	Asuc_1798	-	hypothetical protein
1768	 46.88	0	1977926..1978936	-	336	152979456	-	Asuc_1799	-	Holliday junction DNA helicase B
1769	 44.23	0	1978945..1979559	-	204	152979457	-	Asuc_1800	-	Holliday junction DNA helicase motor protein
1770	 50.32	+1	1979618..1980235	-	205	152979458	-	Asuc_1801	-	Holliday junction resolvase
1771	 42.94	0	1980250..1980780	-	176	152979459	-	Asuc_1802	-	hypothetical protein
1772	 49.06	0	1980877..1981620	-	247	152979460	-	Asuc_1803	-	hypothetical protein
1773	 41.83	0	1981947..1982393	-	148	152979461	-	Asuc_1804	-	dATP pyrophosphohydrolase
1774	 47.63	0	1982454..1984223	-	589	152979462	-	Asuc_1805	-	aspartyl-tRNA synthetase
1775	 48.21	0	1984334..1985059	+	241	152979463	-	Asuc_1806	-	putative methyltransferase
1776	 42.64	0	1985114..1985833	+	239	152979464	-	Asuc_1807	-	extracellular solute-binding protein
1777	 46.08	0	1985952..1986359	+	135	152979465	-	Asuc_1808	-	lactoylglutathione lyase
1778	 46.84	0	1986362..1987042	+	226	152979466	-	Asuc_1809	-	ribonuclease T
1779	 46.17	0	1987079..1988434	+	451	152979467	-	Asuc_1810	-	Na+ antiporter NhaC
1780	 42.10	0	1988484..1989065	+	193	152979468	-	Asuc_1811	-	hypothetical protein
1781	 40.74	-1	1989170..1989439	+	89	152979469	-	Asuc_1812	-	30S ribosomal protein S15
1782	 47.57	0	1989734..1991524	+	596	152979470	-	Asuc_1813	-	fumarate reductase flavoprotein subunit
1783	 43.23	0	1991537..1992304	+	255	152979471	-	Asuc_1814	-	fumarate reductase iron-sulfur subunit
1784	 41.03	-1	1992315..1992704	+	129	152979472	-	Asuc_1815	-	fumarate reductase subunit C
1785	 44.64	0	1992724..1993068	+	114	152979473	-	Asuc_1816	-	fumarate reductase subunit D
1786	 46.61	0	1993293..1994309	+	338	152979474	-	Asuc_1817	-	UDP-glucose 4-epimerase
1787	 46.85	0	1994479..1995765	+	428	152979475	-	Asuc_1818	-	AmpG-related permease
1788	 48.99	0	1995901..1996545	+	214	152979476	-	Asuc_1819	-	adenylate kinase
1789	 42.72	0	1996606..1997511	-	301	152979477	-	Asuc_1820	-	periplasmic binding protein
1790	 43.32	0	1997524..1998294	-	256	152979478	-	Asuc_1821	-	ABC transporter related
1791	 40.48	-1	1998291..1999256	-	321	152979479	-	Asuc_1822	-	transport system permease protein
1792	 41.95	0	1999249..2000235	-	328	152979480	-	Asuc_1823	-	transport system permease protein
1793	 45.28	0	2000330..2001769	-	479	152979481	-	Asuc_1824	-	peptidase M23B
1794	 43.52	0	2001962..2002756	+	264	152979482	-	Asuc_1825	-	ABC transporter related
1795	 47.71	0	2002769..2003554	+	261	152979483	-	Asuc_1826	-	ABC-3 protein
1796	 47.39	0	2004039..2005226	+	395	152979484	-	Asuc_1827	-	tyrosyl-tRNA synthetase
1797	 52.69	+1	2005304..2006233	+	309	152979485	-	Asuc_1828	-	aminoimidazole riboside kinase
1798	 45.62	0	2006307..2007755	+	482	152979486	-	Asuc_1829	-	sucrose-6-phosphate hydrolase
1799	 49.42	0	2007836..2009134	+	432	152979487	-	Asuc_1830	-	adenylosuccinate synthetase
1800	 45.14	0	2009275..2011332	-	685	152979488	-	Asuc_1831	-	methionyl-tRNA synthetase
1801	 45.91	0	2011483..2012595	+	370	152979489	-	Asuc_1832	-	putative ATPase
1802	 40.40	-1	2012666..2012863	-	65	152979490	-	Asuc_1833	-	hypothetical protein
1803	 39.80	-1	2012876..2013463	-	195	152979491	-	Asuc_1834	-	RNA polymerase sigma factor
1804	 36.63	-2	2013637..2013879	+	80	152979492	-	Asuc_1835	-	hypothetical protein
1805	 44.23	0	2013903..2014856	+	317	152979493	-	Asuc_1836	-	putative sulfite oxidase subunit YedY
1806	 40.59	-1	2014856..2015434	+	192	152979494	-	Asuc_1837	-	putative sulfite oxidase subunit YedZ
1807	 48.11	0	2015509..2018397	-	962	152979495	-	Asuc_1838	-	ribonuclease
1808	 49.58	0	2018895..2019854	+	319	152979496	-	Asuc_1839	-	23S rRNA pseudouridylate synthase C
1809	 42.78	0	2019851..2020390	+	179	152979497	-	Asuc_1840	-	hypothetical protein
1810	 47.73	0	2020459..2023209	-	916	152979498	-	Asuc_1841	-	peptidase M16 domain-containing protein
1811	 41.03	-1	2023284..2025815	-	843	152979499	-	Asuc_1842	-	TonB-dependent receptor plug
1812	 48.82	0	2025877..2026806	-	309	152979500	-	Asuc_1843	-	hypothetical protein
1813	 43.12	0	2026835..2028295	-	486	152979501	-	Asuc_1844	-	hypothetical protein
1814	 44.75	0	2028492..2028815	-	107	152979502	-	Asuc_1845	-	thioredoxin
1815	 47.15	0	2028960..2030066	-	368	152979503	-	Asuc_1846	-	cystathionine gamma-synthase
1816	 48.98	0	2031160..2032488	+	442	152979504	-	Asuc_1847	-	glucarate dehydratase
1817	 44.44	0	2032633..2034018	+	461	152979505	-	Asuc_1848	-	gluconate transporter
1818	 43.18	0	2034255..2035229	+	324	152979506	-	Asuc_1849	-	hypothetical protein
1819	 37.90	-1	2035299..2035802	+	167	152979507	-	Asuc_1850	-	hypothetical protein
1820	 45.65	0	2035813..2037306	+	497	152979508	-	Asuc_1851	-	hypothetical protein
1821	 47.53	0	2037376..2038713	+	445	152979509	-	Asuc_1852	-	mandelate racemase/muconate lactonizing protein
1822	 45.31	0	2038774..2039625	+	283	152979510	-	Asuc_1853	-	aldo/keto reductase
1823	 46.88	0	2039825..2040931	+	368	152979511	-	Asuc_1854	-	SMP-30/gluconolaconase/LRE domain-containing protein
1824	 49.58	0	2041180..2042736	+	518	152979512	-	Asuc_1855	-	galactarate dehydratase
1825	 42.10	0	2042798..2043949	-	383	152979513	-	Asuc_1856	-	carbohydrate diacid transcriptional activator CdaR
1826	 46.61	0	2043962..2045098	-	378	152979514	-	Asuc_1857	-	glycerate kinase
1827	 46.17	0	2045227..2046114	-	295	152979515	-	Asuc_1858	-	tartronate semialdehyde reductase
1828	 44.36	0	2046157..2046927	-	256	152979516	-	Asuc_1859	-	alpha-dehydro-beta-deoxy-D-glucarate aldolase
1829	 43.78	0	2047177..2048085	+	302	152979517	-	Asuc_1860	-	recombination associated protein
1830	 43.72	0	2048112..2048804	-	230	152979518	-	Asuc_1861	-	chromosomal replication initiator DnaA
1831	 47.17	0	2048809..2052285	-	1158	152979519	-	Asuc_1862	-	DNA polymerase III subunit alpha
1832	 46.08	0	2052339..2053640	-	433	152979520	-	Asuc_1863	-	hypothetical protein
1833	 43.18	0	2053653..2054180	-	175	152979521	-	Asuc_1864	-	hypothetical protein
1834	 48.15	0	2054267..2055049	-	260	152979522	-	Asuc_1865	-	TatD family hydrolase
1835	 47.60	0	2055098..2056099	-	333	152979523	-	Asuc_1866	-	DNA polymerase III subunit delta'
1836	 52.13	+1	2056092..2056724	-	210	152979524	-	Asuc_1867	-	thymidylate kinase
1837	 45.20	0	2056810..2057871	-	353	152979525	-	Asuc_1868	-	aminodeoxychorismate lyase
1838	 48.02	0	2057982..2059220	-	412	152979526	-	Asuc_1869	-	D-3-phosphoglycerate dehydrogenase
1839	 49.70	0	2059321..2059980	-	219	152979527	-	Asuc_1870	-	ribose-5-phosphate isomerase A
1840	 48.47	0	2060192..2061367	-	391	152979528	-	Asuc_1871	-	coproporphyrinogen III oxidase
1841	 49.17	0	2061372..2061971	-	199	152979529	-	Asuc_1872	-	putative deoxyribonucleotide triphosphate pyrophosphatase
1842	 46.49	0	2062087..2062428	-	113	152979530	-	Asuc_1873	-	helix-hairpin-helix repeat-containing competence protein ComEA
1843	 50.37	+1	2062627..2063571	-	314	152979531	-	Asuc_1874	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
1844	 42.89	0	2063568..2064059	-	163	152979532	-	Asuc_1875	-	lipoprotein signal peptidase
1845	 47.82	0	2064270..2067017	-	915	152979533	-	Asuc_1876	-	isoleucyl-tRNA synthetase
1846	 47.69	0	2067123..2068076	-	317	152979534	-	Asuc_1877	-	bifunctional riboflavin kinase/FMN adenylyltransferase
1847	 51.25	+1	2068299..2069018	-	239	152979535	-	Asuc_1878	-	nitroreductase A
1848	 49.70	0	2069168..2071996	-	942	152979536	-	Asuc_1879	-	excinuclease ABC subunit A
1849	 50.83	+1	2072148..2072627	+	159	152979537	-	Asuc_1880	-	single-strand binding protein
1850	 48.42	0	2074125..2074727	-	200	152979538	-	Asuc_1883	-	putative glycerol-3-phosphate acyltransferase PlsY
1851	 42.42	0	2074830..2075192	+	120	152979539	-	Asuc_1884	-	dihydroneopterin aldolase
1852	 42.01	0	2075233..2075958	-	241	152979540	-	Asuc_1885	-	fatty acid metabolism regulator
1853	 46.08	0	2076108..2077676	+	522	152979541	-	Asuc_1886	-	sodium/proton antiporter
1854	 44.69	0	2077699..2078235	+	178	152979542	-	Asuc_1887	-	disulphide bond formation protein DsbB
1855	 45.30	0	2078284..2079336	-	350	152979543	-	Asuc_1888	-	hypothetical protein
1856	 43.92	0	2079424..2079801	-	125	152979544	-	Asuc_1889	-	cytochrome b562
1857	 44.54	0	2079829..2080167	-	112	152979545	-	Asuc_1890	-	nitrogen regulatory protein P-II
1858	 50.34	+1	2080218..2080811	-	197	152979546	-	Asuc_1891	-	molybdenum cofactor biosynthesis protein
1859	 51.89	+1	2080827..2081435	-	202	152979547	-	Asuc_1892	-	ribonuclease HII
1860	 48.55	0	2081450..2082619	-	389	152979548	-	Asuc_1893	-	lipid-A-disaccharide synthase
1861	 50.44	+1	2082682..2083470	-	262	152979549	-	Asuc_1894	-	UDP-N-acetylglucosamine acyltransferase
1862	 45.70	0	2083483..2083935	-	150	152979550	-	Asuc_1895	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
1863	 46.83	0	2084096..2085103	-	335	152979551	-	Asuc_1896	-	beta-methylgalactoside transporter inner membrane component
45.47	MEAN

4.33	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.