IslandPath Analysis: Actinobacillus succinogenes 130Z



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.47   STD DEV: 4.33
Actinobacillus succinogenes 130Z, complete genome - 1..2319663
2079 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
116	 41.54	0	141617..142957	-	446	152977804	-	Asuc_0118	-	phospholipase/carboxylesterase
117	 48.78	0	143015..144367	-	450	152977805	-	Asuc_0119	-	gluconate transporter
118	 45.05	0	144529..145305	-	258	152977806	-	Asuc_0120	-	hydroxypyruvate isomerase
119	 47.55	0	145308..145940	-	210	152977807	-	Asuc_0121	-	putative aldolase
120	 47.95	0	145937..147181	-	414	152977808	-	Asuc_0122	-	type III effector Hrp-dependent outers
121	 48.62	0	147181..148083	-	300	152977809	-	Asuc_0123	-	6-phosphogluconate dehydrogenase NAD-binding
122	 44.27	0	148268..149026	+	252	152977810	-	Asuc_0124	-	DeoR family transcriptional regulator
123	 48.10	0	149169..151145	+	658	152977811	-	Asuc_0125	-	bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein
124	 45.19	0	151333..152091	-	252	152977812	-	Asuc_0126	-	DeoR family transcriptional regulator
125	 47.68	0	152249..152701	-	150	152977813	-	Asuc_0127	-	PTS system, glucose subfamily, IIA subunit
126	 45.87	0	152713..154068	-	451	152977814	-	Asuc_0128	-	sugar (glycoside-Pentoside-hexuronide) transporter
127	 49.09	0	154164..155762	-	532	152977815	-	Asuc_0129	-	carbohydrate kinase FGGY
128	 47.18	0	155843..156622	-	259	152977816	-	Asuc_0130	-	short-chain dehydrogenase/reductase SDR
129	 45.67	0	156799..157917	+	372	152977817	-	Asuc_0131	-	ROK family protein
130	 48.28	0	158130..160565	+	811	152977818	-	Asuc_0132	-	DNA gyrase subunit B
131	 48.97	0	160885..161760	-	291	152977819	-	Asuc_0133	-	alpha/beta hydrolase fold
132	 41.99	0	161772..162002	-	76	152977820	-	Asuc_0134	-	4-oxalocrotonate tautomerase
133	 47.99	0	162024..162596	-	190	152977821	-	Asuc_0135	-	NADP oxidoreductase coenzyme F420-dependent
134	 47.55	0	162712..163590	+	292	152977822	-	Asuc_0136	-	LysR family transcriptional regulator
135	 48.64	0	163587..164063	-	158	152977823	-	Asuc_0137	-	RNA methyltransferase
136	 41.31	0	164136..164348	-	70	152977824	-	Asuc_0138	-	hypothetical protein
137	 46.17	0	164456..164860	-	134	152977825	-	Asuc_0139	-	protein tyrosine phosphatase
138	 50.86	+1	165022..166071	-	349	152977826	-	Asuc_0140	-	L-asparaginase II
139	 45.94	0	166106..167533	-	475	152977827	-	Asuc_0141	-	aspartate ammonia-lyase
140	 50.11	+1	167817..169139	+	440	152977828	-	Asuc_0142	-	anaerobic C4-dicarboxylate transporter
141	 46.24	0	169242..170132	+	296	152977829	-	Asuc_0143	-	hypothetical protein
142	 49.09	0	170165..171649	+	494	152977830	-	Asuc_0144	-	cardiolipin synthetase
143	 44.30	0	171720..173123	-	467	152977831	-	Asuc_0145	-	glucuronate isomerase
144	 42.96	0	173431..174417	-	328	152977832	-	Asuc_0146	-	TRAP dicarboxylate transporter, DctP subunit
145	 43.90	0	174656..175147	+	163	152977833	-	Asuc_0147	-	tripartite ATP-independent periplasmic transporter DctQ
146	 43.86	0	175159..176460	+	433	152977834	-	Asuc_0148	-	TRAP dicarboxylate transporter, DctM subunit
147	 43.71	0	176471..178861	+	796	152977835	-	Asuc_0149	-	Alpha-glucosidase
148	 43.92	0	178864..179619	+	251	152977836	-	Asuc_0150	-	GntR domain-containing protein
149	 47.43	0	179645..180829	+	394	152977837	-	Asuc_0151	-	mannonate dehydratase
150	 54.77	+2	181006..181644	-	212	152977838	-	Asuc_0152	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
151	 53.25	+1	181674..182612	-	312	152977839	-	Asuc_0153	-	ribokinase-like domain-containing protein
152	 45.77	0	182624..184111	-	495	152977840	-	Asuc_0154	-	Altronate dehydratase
153	 43.90	0	184125..185582	-	485	152977841	-	Asuc_0155	-	altronate oxidoreductase
154	 39.98	-1	185604..186896	-	430	152977842	-	Asuc_0156	-	TRAP dicarboxylate transporter, DctM subunit
155	 29.88	-2	186899..187390	-	163	152977843	-	Asuc_0157	-	tripartite ATP-independent periplasmic transporter DctQ
156	 37.69	-1	187444..188430	-	328	152977844	-	Asuc_0158	-	TRAP dicarboxylate transporter, DctP subunit
157	 39.80	-1	188565..189569	-	334	152977845	-	Asuc_0159	-	alcohol dehydrogenase
158	 32.57	-2	189717..190628	+	303	152977846	-	Asuc_0160	-	GntR domain-containing protein
159	 48.43	0	190677..191186	-	169	152977847	-	Asuc_0161	-	GCN5-related N-acetyltransferase
160	 47.81	0	191189..192874	-	561	152977848	-	Asuc_0162	-	nitrate/nitrite sensor protein NarQ
161	 48.32	0	192989..193555	-	188	152977849	-	Asuc_0163	-	Ferritin Dps family protein
162	 48.45	0	193799..194089	+	96	152977850	-	Asuc_0164	-	hypothetical protein
163	 52.35	+1	194220..195455	+	411	152977851	-	Asuc_0165	-	chloride channel core
164	 49.44	0	195576..196991	-	471	152977852	-	Asuc_0166	-	glutamine synthetase, type I
165	 50.30	+1	197434..199284	+	616	152977853	-	Asuc_0167	-	GTP-binding protein TypA
166	 35.94	-2	199598..201019	-	473	152977854	-	Asuc_0168	-	hypothetical protein
167	 41.48	0	201042..202514	-	490	152977855	-	Asuc_0169	-	carbohydrate kinase FGGY
168	 39.96	-1	202530..203465	-	311	152977856	-	Asuc_0170	-	transketolase domain-containing protein
169	 38.27	-1	203458..204288	-	276	152977857	-	Asuc_0171	-	transketolase domain-containing protein
170	 37.67	-1	204470..205507	-	345	152977858	-	Asuc_0172	-	monosaccharide-transporting ATPase
171	 35.89	-2	205528..207051	-	507	152977859	-	Asuc_0173	-	ABC transporter related
172	 33.17	-2	207063..207659	-	198	152977860	-	Asuc_0174	-	putative lipoprotein
173	 37.73	-1	207716..208648	-	310	152977861	-	Asuc_0175	-	periplasmic binding protein/LacI transcriptional regulator
174	 35.32	-2	208793..209746	-	317	152977862	-	Asuc_0176	-	DeoR family transcriptional regulator
175	 39.69	-1	209847..210491	-	214	152977863	-	Asuc_0177	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
176	 51.06	+1	210975..212486	-	503	152977864	-	Asuc_0178	-	aminoacyl-histidine dipeptidase
177	 52.07	+1	212545..213003	+	152	152977865	-	Asuc_0179	-	xanthine-guanine phosphoribosyltransferase
178	 53.05	+1	213061..213765	+	234	152977866	-	Asuc_0180	-	molybdate ABC transporter permease protein
179	 52.30	+1	213765..214460	+	231	152977867	-	Asuc_0181	-	molybdate ABC transporter, ATPase subunit
180	 50.82	+1	214525..216240	-	571	152977868	-	Asuc_0182	-	prolyl-tRNA synthetase
181	 48.70	0	216637..218094	+	485	152977869	-	Asuc_0183	-	anion transporter
182	 48.46	0	218202..219272	+	356	152977870	-	Asuc_0184	-	hypothetical protein
183	 49.79	0	219437..222043	-	868	152977871	-	Asuc_0185	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
184	 44.35	0	222162..222905	+	247	152977872	-	Asuc_0186	-	GntR family transcriptional regulator
185	 48.38	0	223172..223789	-	205	152977873	-	Asuc_0187	-	glutathione S-transferase domain-containing protein
186	 47.92	0	223802..225049	-	415	152977874	-	Asuc_0188	-	diaminopimelate decarboxylase
187	 44.87	0	225059..225214	-	51	152977875	-	Asuc_0189	-	hypothetical protein
188	 46.11	0	225225..225584	-	119	152977876	-	Asuc_0190	-	diacylglycerol kinase
189	 49.98	+1	225628..227850	-	740	152977877	-	Asuc_0191	-	(p)ppGpp synthetase I, SpoT/RelA
190	 50.53	+1	227863..229182	-	439	152977878	-	Asuc_0192	-	23S rRNA 5-methyluridine methyltransferase
191	 50.98	+1	229206..229919	-	237	152977879	-	Asuc_0193	-	DNA repair protein RecO
192	 40.00	-1	230137..230556	+	139	152977880	-	Asuc_0194	-	D-ribose pyranase
193	 41.38	0	230566..232068	+	500	152977881	-	Asuc_0195	-	D-ribose transporter ATP binding protein
194	 42.11	0	232078..233046	+	322	152977882	-	Asuc_0196	-	ribose ABC transporter permease protein
195	 44.71	0	233066..233944	+	292	152977883	-	Asuc_0197	-	D-ribose transporter subunit RbsB
196	 53.27	+1	234004..234936	+	310	152977884	-	Asuc_0198	-	ribokinase
197	 52.28	+1	234972..235979	+	335	152977885	-	Asuc_0199	-	periplasmic binding protein/LacI transcriptional regulator
198	 51.78	+1	236063..236794	+	243	152977886	-	Asuc_0200	-	hypothetical protein
199	 48.51	0	236806..237411	+	201	152977887	-	Asuc_0201	-	hypothetical protein
200	 55.56	+2	237411..237833	+	140	152977888	-	Asuc_0202	-	Holliday junction resolvase-like protein
201	 45.77	0	237942..239219	-	425	152977889	-	Asuc_0203	-	sn-glycerol-3-phosphate dehydrogenase subunit C
202	 51.97	+1	239221..240513	-	430	152977890	-	Asuc_0204	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
203	 51.01	+1	240503..242182	-	559	152977891	-	Asuc_0205	-	sn-glycerol-3-phosphate dehydrogenase subunit A
204	 42.61	0	242333..242623	-	96	152977892	-	Asuc_0206	-	antibiotic biosynthesis monooxygenase
205	 44.44	0	242700..245012	-	770	152977893	-	Asuc_0207	-	formate acetyltransferase
206	 46.74	0	245099..245956	-	285	152977894	-	Asuc_0208	-	formate/nitrite transporter
207	 49.72	0	246234..246587	+	117	152977895	-	Asuc_0209	-	histidine triad (HIT) protein
208	 46.89	0	246584..246937	+	117	152977896	-	Asuc_0210	-	hypothetical protein
209	 51.30	+1	246939..247979	+	346	152977897	-	Asuc_0211	-	beta-hexosaminidase
210	 48.61	0	248489..249640	+	383	152977898	-	Asuc_0212	-	23S rRNA methyluridine methyltransferase
211	 50.95	+1	249814..251022	-	402	152977899	-	Asuc_0213	-	mandelate racemase/muconate lactonizing protein
212	 49.78	0	251141..252064	+	307	152977900	-	Asuc_0214	-	LysR family transcriptional regulator
213	 45.70	0	252108..253013	-	301	152977901	-	Asuc_0215	-	LysR family transcriptional regulator
214	 46.71	0	253156..253596	+	146	152977902	-	Asuc_0216	-	hypothetical protein
215	 49.84	+1	253666..254307	-	213	152977903	-	Asuc_0217	-	lysine exporter protein LysE/YggA
45.47	MEAN

4.33	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.