IslandPathversion 1.0

IslandPath Analysis: Actinobacillus succinogenes 130Z



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.47 STD DEV: 4.33
Actinobacillus succinogenes 130Z, complete genome - 1..2319663
2079 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1460	 39.81	-1	1646931..1647563	-	210	152979148	-	Asuc_1484	-	lysine exporter protein LysE/YggA
1461	 43.24	0	1647567..1648091	-	174	152979149	-	Asuc_1485	-	phosphatidylglycerophosphatase A
1462	 50.10	+1	1648190..1649185	-	331	152979150	-	Asuc_1486	-	thiamine-monophosphate kinase
1463	 46.85	0	1649373..1649801	-	142	152979151	-	Asuc_1487	-	transcription antitermination protein NusB
1464	 51.27	+1	1649804..1650277	-	157	152979152	-	Asuc_1488	-	riboflavin synthase subunit beta
1465	 48.09	0	1650470..1651675	+	401	152979153	-	Asuc_1489	-	aromatic amino acid transporter
1466	 45.99	0	1651810..1654716	+	968	152979154	-	Asuc_1490	-	(glutamate--ammonia-ligase) adenylyltransferase
1467	 44.37	0	1654768..1655220	-	150	152979155	-	Asuc_1491	-	ClpXP protease specificity-enhancing factor
1468	 40.38	-1	1655220..1655858	-	212	152979156	-	Asuc_1492	-	glutathione S-transferase domain-containing protein
1469	 45.96	0	1656068..1656463	-	131	152979157	-	Asuc_1493	-	30S ribosomal protein S9
1470	 43.36	0	1656479..1656907	-	142	152979158	-	Asuc_1494	-	50S ribosomal protein L13
1471	 50.55	+1	1657748..1659112	+	454	152979159	-	Asuc_1495	-	diaminobutyrate--2-oxoglutarate aminotransferase
1472	 48.57	0	1659281..1660816	+	511	152979160	-	Asuc_1496	-	pyridoxal-dependent decarboxylase
1473	 43.87	0	1660997..1661404	+	135	152979161	-	Asuc_1497	-	hypothetical protein
1474	 47.50	0	1661555..1662034	+	159	152979162	-	Asuc_1498	-	cupin 2 domain-containing protein
1475	 49.90	+1	1662158..1663171	-	337	152979163	-	Asuc_1499	-	hydrogenase expression/formation protein HypE
1476	 50.94	+1	1663251..1664363	-	370	152979164	-	Asuc_1500	-	hydrogenase expression/formation protein HypD
1477	 46.59	0	1664366..1665157	-	263	152979165	-	Asuc_1501	-	hydrogenase nickel incorporation protein HypB
1478	 46.79	0	1665260..1665913	-	217	152979166	-	Asuc_1502	-	GTP cyclohydrolase II
1479	 46.14	0	1665997..1666722	+	241	152979167	-	Asuc_1503	-	phosphatidylglycerophosphatase
1480	 47.87	0	1666772..1667686	+	304	152979168	-	Asuc_1504	-	N-acetyl-D-glucosamine kinase
1481	 44.44	0	1667686..1668558	+	290	152979169	-	Asuc_1505	-	hypothetical protein
1482	 50.37	+1	1668858..1669667	+	269	152979170	-	Asuc_1506	-	hydroxyethylthiazole kinase
1483	 51.62	+1	1669678..1670481	+	267	152979171	-	Asuc_1507	-	phosphomethylpyrimidine kinase
1484	 49.25	0	1670474..1671139	+	221	152979172	-	Asuc_1508	-	thiamine-phosphate pyrophosphorylase
1485	 47.66	0	1671275..1672279	+	334	152979173	-	Asuc_1509	-	ornithine carbamoyltransferase
1486	 49.06	0	1672395..1673087	-	230	152979174	-	Asuc_1510	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
1487	 41.44	0	1673084..1673749	-	221	152979175	-	Asuc_1511	-	TrxA protein
1488	 49.73	0	1673750..1675426	-	558	152979176	-	Asuc_1512	-	single-stranded-DNA-specific exonuclease RecJ
1489	 46.67	0	1675670..1676359	-	229	152979177	-	Asuc_1513	-	DsbG protein
1490	 48.81	0	1676630..1677637	+	335	152979178	-	Asuc_1514	-	peptide chain release factor 2
1491	 48.21	0	1677731..1679242	+	503	152979179	-	Asuc_1515	-	lysyl-tRNA synthetase
1492	 45.61	0	1679304..1679645	+	113	152979180	-	Asuc_1516	-	hydrogenase nickel insertion protein HypA
1493	 50.64	+1	1679745..1680368	-	207	152979181	-	Asuc_1517	-	cation efflux protein
1494	 45.16	0	1680457..1680828	+	123	152979182	-	Asuc_1518	-	MerR family transcriptional regulator
1495	 50.18	+1	1680819..1681376	-	185	152979183	-	Asuc_1519	-	ferredoxin-type protein NapF
1496	 45.54	0	1681391..1681996	-	201	152979184	-	Asuc_1520	-	twin-argninine leader-binding protein DmsD
1497	 46.72	0	1682072..1682893	-	273	152979185	-	Asuc_1521	-	DMSO reductase anchor subunit (DmsC)
1498	 44.98	0	1682895..1683512	-	205	152979186	-	Asuc_1522	-	dimethylsulfoxide reductase chain B
1499	 46.44	0	1683522..1685954	-	810	152979187	-	Asuc_1523	-	anaerobic dimethyl sulfoxide reductase subunit A
1500	 43.28	0	1685980..1688412	-	810	152979188	-	Asuc_1524	-	anaerobic dimethyl sulfoxide reductase subunit A
1501	 41.37	0	1688703..1689785	-	360	152979189	-	Asuc_1525	-	extracellular solute-binding protein
1502	 40.52	-1	1689813..1690661	-	282	152979190	-	Asuc_1526	-	binding-protein-dependent transport systems inner membrane component
1503	 42.18	0	1690658..1691527	-	289	152979191	-	Asuc_1527	-	binding-protein-dependent transport systems inner membrane component
1504	 40.13	-1	1691524..1692597	-	357	152979192	-	Asuc_1528	-	ABC transporter related
1505	 49.64	0	1692846..1693820	-	324	152979193	-	Asuc_1529	-	2-nitropropane dioxygenase NPD
1506	 51.85	+1	1694385..1694681	-	98	152979194	-	Asuc_1531	-	hypothetical protein
1507	 52.90	+1	1694694..1695245	-	183	152979195	-	Asuc_1532	-	NAD(P)H dehydrogenase (quinone)
1508	 54.11	+1	1695257..1695973	-	238	152979196	-	Asuc_1533	-	antibiotic biosynthesis monooxygenase
1509	 55.47	+2	1696017..1696766	-	249	152979197	-	Asuc_1534	-	short-chain dehydrogenase/reductase SDR
1510	 54.02	+1	1696794..1697813	-	339	152979198	-	Asuc_1535	-	aldo/keto reductase
1511	 53.33	+1	1698160..1699059	+	299	152979199	-	Asuc_1536	-	LysR family transcriptional regulator
1512	 46.31	0	1699398..1700684	+	428	152979200	-	Asuc_1537	-	hypothetical protein
1513	 26.65	-2	1700645..1701571	+	308	152979201	-	Asuc_1538	-	hypothetical protein
1514	 49.19	0	1702031..1703020	-	329	152979202	-	Asuc_1540	-	alcohol dehydrogenase
1515	 48.03	0	1703242..1704255	-	337	152979203	-	Asuc_1541	-	beta-lactamase domain-containing protein
1516	 54.02	+1	1704381..1705289	+	302	152979204	-	Asuc_1542	-	LysR family transcriptional regulator
1517	 46.13	0	1706157..1707086	+	309	152979205	-	Asuc_1545	-	LysR family transcriptional regulator
1518	 45.80	0	1707293..1707958	+	221	152979206	-	Asuc_1546	-	nitroreductase
1519	 45.40	0	1708069..1708383	-	104	152979207	-	Asuc_1547	-	translation initiation factor Sui1
1520	 45.21	0	1708397..1709095	-	232	152979208	-	Asuc_1548	-	orotidine 5'-phosphate decarboxylase
1521	 42.07	0	1709129..1710307	-	392	152979209	-	Asuc_1549	-	hypothetical protein
1522	 37.00	-1	1710304..1710603	-	99	152979210	-	Asuc_1550	-	hypothetical protein
1523	 37.89	-1	1710712..1710996	-	94	152979211	-	Asuc_1551	-	integration host factor, beta subunit
1524	 42.53	0	1711140..1712792	-	550	152979212	-	Asuc_1552	-	30S ribosomal protein S1
1525	 48.54	0	1712894..1713577	-	227	152979213	-	Asuc_1553	-	cytidylate kinase
1526	 45.71	0	1713602..1714441	-	279	152979214	-	Asuc_1554	-	hypothetical protein
1527	 45.75	0	1714564..1716585	+	673	152979215	-	Asuc_1555	-	lytic transglycosylase catalytic
1528	 47.06	0	1716620..1716925	+	101	152979216	-	Asuc_1556	-	Trp operon repressor
1529	 44.36	0	1716906..1717658	+	250	152979217	-	Asuc_1557	-	monofunctional biosynthetic peptidoglycan transglycosylase
1530	 48.82	0	1717668..1718558	+	296	152979218	-	Asuc_1558	-	transporter DMT superfamily protein
1531	 46.12	0	1718684..1719457	-	257	152979219	-	Asuc_1559	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
1532	 45.91	0	1719595..1720365	+	256	152979220	-	Asuc_1560	-	ModE family transcriptional regulator
1533	 50.12	+1	1720377..1720799	+	140	152979221	-	Asuc_1561	-	thioesterase superfamily protein
1534	 48.51	0	1720792..1721766	+	324	152979222	-	Asuc_1562	-	ferrochelatase
1535	 44.26	0	1721837..1722376	-	179	152979223	-	Asuc_1563	-	hypothetical protein
1536	 51.61	+1	1722485..1723354	-	289	152979224	-	Asuc_1564	-	succinyl-CoA synthetase, alpha subunit
1537	 49.35	0	1723366..1724526	-	386	152979225	-	Asuc_1565	-	succinyl-CoA synthetase, beta subunit
1538	 49.96	+1	1724715..1725893	-	392	152979226	-	Asuc_1566	-	2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase
1539	 49.96	+1	1725917..1728742	-	941	152979227	-	Asuc_1567	-	2-oxoglutarate dehydrogenase, E1 subunit
1540	 47.49	0	1728936..1730327	+	463	152979228	-	Asuc_1568	-	anion transporter
1541	 47.96	0	1730389..1731516	-	375	152979229	-	Asuc_1569	-	bifunctional chorismate mutase/prephenate dehydrogenase
1542	 47.62	0	1731655..1732704	-	349	152979230	-	Asuc_1570	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1543	 47.82	0	1732885..1734762	-	625	152979231	-	Asuc_1571	-	signal peptide peptidase SppA, 67K type
1544	 53.41	+1	1735022..1735519	+	165	152979232	-	Asuc_1572	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
1545	 47.78	0	1735620..1736699	+	359	152979233	-	Asuc_1573	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
1546	 47.10	0	1736834..1738024	+	396	152979234	-	Asuc_1574	-	aromatic amino acid aminotransferase
1547	 37.99	-1	1738111..1739184	-	357	152979235	-	Asuc_1575	-	triosephosphate isomerase
1548	 37.19	-1	1739195..1739869	-	224	152979236	-	Asuc_1576	-	cyclase family protein
1549	 42.13	0	1739881..1741176	-	431	152979237	-	Asuc_1577	-	TRAP dicarboxylate transporter, DctM subunit
1550	 32.29	-2	1741176..1741652	-	158	152979238	-	Asuc_1578	-	tripartite ATP-independent periplasmic transporter DctQ
1551	 39.98	-1	1741758..1742735	-	325	152979239	-	Asuc_1579	-	TRAP dicarboxylate transporter, DctP subunit
1552	 41.72	0	1742799..1743251	-	150	152979240	-	Asuc_1580	-	ribose 5-phosphate isomerase B
1553	 41.69	0	1743271..1744227	-	318	152979241	-	Asuc_1581	-	DeoR family transcriptional regulator
1554	 33.68	-2	1744227..1745090	-	287	152979242	-	Asuc_1582	-	xylose isomerase domain-containing protein
1555	 44.08	0	1745109..1746029	-	306	152979243	-	Asuc_1583	-	amidohydrolase 2
1556	 45.55	0	1746040..1747308	-	422	152979244	-	Asuc_1584	-	major facilitator transporter
1557	 48.80	0	1747363..1747989	-	208	152979245	-	Asuc_1585	-	dihydroxyacetone kinase, L subunit
1558	 46.17	0	1747991..1748995	-	334	152979246	-	Asuc_1586	-	Glycerone kinase
1559	 41.30	0	1749027..1750043	-	338	152979247	-	Asuc_1587	-	4-hydroxythreonine-4-phosphate dehydrogenase
45.47	MEAN

4.33	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.