IslandPathversion 1.0

IslandPath Analysis: Actinobacillus succinogenes 130Z



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.47 STD DEV: 4.33
Actinobacillus succinogenes 130Z, complete genome - 1..2319663
2079 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1346	 51.15	+1	1521263..1522390	+	375	152979034	-	Asuc_1368	-	riboflavin biosynthesis protein RibD
1347	 44.54	0	1522387..1523430	+	347	152979035	-	Asuc_1369	-	periplasmic serine protease DegS
1348	 40.99	-1	1523674..1524522	-	282	152979036	-	Asuc_1370	-	patatin
1349	 45.05	0	1524647..1525363	+	238	152979037	-	Asuc_1371	-	NAD-dependent deacetylase
1350	 46.49	0	1525509..1527362	-	617	152979038	-	Asuc_1372	-	1-deoxy-D-xylulose-5-phosphate synthase
1351	 44.11	0	1527368..1528258	-	296	152979039	-	Asuc_1373	-	polyprenyl synthetase
1352	 45.57	0	1528260..1528496	-	78	152979040	-	Asuc_1374	-	exodeoxyribonuclease VII small subunit
1353	 39.48	-1	1528564..1529442	+	292	152979041	-	Asuc_1375	-	glycosyl transferase family protein
1354	 43.30	0	1529435..1530217	-	260	152979042	-	Asuc_1376	-	hypothetical protein
1355	 44.54	0	1530227..1530958	-	243	152979043	-	Asuc_1377	-	molybdopterin biosynthesis protein MoeB
1356	 47.45	0	1530963..1532180	-	405	152979044	-	Asuc_1378	-	molybdenum cofactor synthesis domain-containing protein
1357	 44.57	0	1532349..1533149	+	266	152979045	-	Asuc_1379	-	exodeoxyribonuclease III
1358	 38.83	-1	1533149..1533931	+	260	152979046	-	Asuc_1380	-	hypothetical protein
1359	 44.97	0	1534011..1534895	+	294	152979047	-	Asuc_1381	-	acetyl-CoA carboxylase subunit beta
1360	 44.34	0	1534905..1536212	+	435	152979048	-	Asuc_1382	-	FolC bifunctional protein
1361	 45.74	0	1536254..1536898	-	214	152979049	-	Asuc_1383	-	phosphoglycerate mutase
1362	 44.01	0	1537033..1539645	+	870	152979050	-	Asuc_1384	-	aminopeptidase N
1363	 45.45	0	1539699..1540721	+	340	152979051	-	Asuc_1385	-	dihydroorotate dehydrogenase 2
1364	 44.02	0	1541676..1542227	-	183	152979052	-	Asuc_1387	-	nitroreductase
1365	 43.36	0	1542489..1543316	+	275	152979053	-	Asuc_1388	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
1366	 41.13	-1	1543516..1543977	+	153	152979054	-	Asuc_1389	-	late embryogenesis abundant protein
1367	 33.70	-2	1544061..1544330	+	89	152979055	-	Asuc_1390	-	hypothetical protein
1368	 38.20	-1	1544519..1545361	-	280	152979056	-	Asuc_1391	-	hypothetical protein
1369	 24.79	-2	1545418..1545534	-	38	152979057	-	Asuc_1392	-	hypothetical protein
1370	 46.21	0	1545676..1546374	-	232	152979058	-	Asuc_1393	-	phage transposase
1371	 38.58	-1	1546420..1546686	-	88	152979059	-	Asuc_1394	-	putative transcriptional regulator, Nlp
1372	 47.40	0	1546925..1547656	+	243	152979060	-	Asuc_1395	-	putative phage repressor
1373	 41.69	0	1548215..1549219	-	334	152979061	-	Asuc_1396	-	periplasmic binding protein/LacI transcriptional regulator
1374	 42.24	0	1549451..1550752	+	433	152979062	-	Asuc_1397	-	galactoside permease
1375	 42.72	0	1550763..1553786	+	1007	152979063	-	Asuc_1398	-	glycoside hydrolase family protein
1376	 45.01	0	1553851..1556463	-	870	152979064	-	Asuc_1399	-	DNA topoisomerase I
1377	 43.43	0	1556713..1558128	-	471	152979065	-	Asuc_1400	-	exonuclease I
1378	 39.94	-1	1558197..1558544	-	115	152979066	-	Asuc_1401	-	hypothetical protein
1379	 42.30	0	1558627..1559496	-	289	152979067	-	Asuc_1402	-	putative permease
1380	 48.48	0	1559579..1564114	-	1511	152979068	-	Asuc_1403	-	cell division protein MukB
1381	 48.24	0	1564114..1564851	-	245	152979069	-	Asuc_1404	-	condesin subunit E
1382	 47.49	0	1564917..1566251	-	444	152979070	-	Asuc_1405	-	condesin subunit F
1383	 43.56	0	1566471..1567409	+	312	152979071	-	Asuc_1406	-	PP-loop domain-containing protein
1384	 45.04	0	1567655..1569781	+	708	152979072	-	Asuc_1407	-	anaerobic ribonucleoside triphosphate reductase
1385	 30.09	-2	1569811..1570674	+	287	152979073	-	Asuc_1408	-	hypothetical protein
1386	 47.80	0	1570705..1571181	+	158	152979074	-	Asuc_1409	-	anaerobic ribonucleotide reductase-activating protein
1387	 42.21	0	1571246..1571977	-	243	152979075	-	Asuc_1410	-	acid phosphatase/phosphotransferase
1388	 46.01	0	1572114..1572902	-	262	152979076	-	Asuc_1411	-	TatD-related deoxyribonuclease
1389	 47.86	0	1573090..1573674	+	194	152979077	-	Asuc_1412	-	peptidyl-tRNA hydrolase
1390	 47.89	0	1573776..1574867	+	363	152979078	-	Asuc_1413	-	translation-associated GTPase
1391	 41.61	0	1574925..1575371	+	148	152979079	-	Asuc_1414	-	putative protein-S-isoprenylcysteine methyltransferase
1392	 48.77	0	1575381..1576274	+	297	152979080	-	Asuc_1415	-	homocysteine S-methyltransferase
1393	 45.46	0	1576336..1577745	+	469	152979081	-	Asuc_1416	-	amino acid permease-associated region
1394	 47.49	0	1577829..1578287	-	152	152979082	-	Asuc_1417	-	NLP/P60 protein
1395	 47.14	0	1578392..1578688	-	98	152979083	-	Asuc_1418	-	integration host factor, alpha subunit
1396	 47.07	0	1578692..1581079	-	795	152979084	-	Asuc_1419	-	phenylalanyl-tRNA synthetase subunit beta
1397	 39.92	-1	1581098..1581568	-	156	152979085	-	Asuc_1420	-	hypothetical protein
1398	 42.93	0	1581579..1582568	-	329	152979086	-	Asuc_1421	-	phenylalanyl-tRNA synthetase subunit alpha
1399	 48.31	0	1582902..1584236	-	444	152979087	-	Asuc_1422	-	phosphoglucosamine mutase
1400	 48.31	0	1584314..1585141	-	275	152979088	-	Asuc_1423	-	dihydropteroate synthase
1401	 45.44	0	1585249..1586421	+	390	152979089	-	Asuc_1424	-	major facilitator transporter
1402	 43.07	0	1586560..1588254	-	564	152979090	-	Asuc_1425	-	glucose-6-phosphate isomerase
1403	 47.45	0	1588317..1589393	-	358	152979091	-	Asuc_1426	-	alanine racemase
1404	 48.41	0	1589475..1590893	-	472	152979092	-	Asuc_1427	-	replicative DNA helicase
1405	 47.05	0	1591027..1592112	-	361	152979093	-	Asuc_1428	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1406	 46.17	0	1592299..1593537	-	412	152979094	-	Asuc_1429	-	outer membrane-specific lipoprotein transporter subunit LolE
1407	 45.47	0	1593541..1594224	-	227	152979095	-	Asuc_1430	-	lipoprotein releasing system, ATP-binding protein
1408	 43.51	0	1594502..1595719	-	405	152979096	-	Asuc_1431	-	LolC/E family lipoprotein releasing system, transmembrane protein
1409	 44.90	0	1595719..1596660	-	313	152979097	-	Asuc_1432	-	glycerate dehydrogenase
1410	 46.08	0	1596806..1597660	-	284	152979098	-	Asuc_1433	-	2-dehydro-3-deoxyphosphooctonate aldolase
1411	 44.24	0	1597699..1598514	-	271	152979099	-	Asuc_1434	-	hypothetical protein
1412	 44.83	0	1598525..1599385	-	286	152979100	-	Asuc_1435	-	HemK family modification methylase
1413	 41.22	0	1599390..1599896	-	168	152979101	-	Asuc_1436	-	RDD domain-containing protein
1414	 47.02	0	1599914..1601038	-	374	152979102	-	Asuc_1437	-	peptide chain release factor 1
1415	 47.01	0	1601126..1601593	+	155	152979103	-	Asuc_1438	-	phosphohistidine phosphatase, SixA
1416	 50.36	+1	1601662..1602072	-	136	152979104	-	Asuc_1439	-	dihydroxyacetone kinase, phosphotransfer subunit
1417	 47.85	0	1602077..1602703	-	208	152979105	-	Asuc_1440	-	dihydroxyacetone kinase ADP-binding subunit
1418	 47.43	0	1602706..1603776	-	356	152979106	-	Asuc_1441	-	dihydroxyacetone kinase subunit DhaK
1419	 40.44	-1	1603950..1604399	+	149	152979107	-	Asuc_1442	-	ribosomal-protein-alanine N-acetyltransferase
1420	 46.63	0	1604468..1605001	-	177	152979108	-	Asuc_1443	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
1421	 43.56	0	1605125..1606903	-	592	152979109	-	Asuc_1444	-	ATP-dependent protease
1422	 42.00	0	1607039..1607488	+	149	152979110	-	Asuc_1445	-	hypothetical protein
1423	 36.19	-2	1607768..1607977	-	69	152979111	-	Asuc_1446	-	cold-shock DNA-binding domain-containing protein
1424	 41.53	0	1608181..1608534	-	117	152979112	-	Asuc_1447	-	ribosomal protein L20
1425	 37.88	-1	1608614..1608811	-	65	152979113	-	Asuc_1448	-	50S ribosomal protein L35
1426	 44.63	0	1609038..1609586	-	182	152979114	-	Asuc_1449	-	translation initiation factor IF-3
1427	 39.70	-1	1609877..1611322	-	481	152979115	-	Asuc_1450	-	hypothetical protein
1428	 45.92	0	1611366..1611929	-	187	152979116	-	Asuc_1451	-	hypothetical protein
1429	 45.16	0	1611967..1613040	-	357	152979117	-	Asuc_1452	-	DNA polymerase IV
1430	 43.33	0	1613115..1614674	-	519	152979118	-	Asuc_1453	-	ATP-dependent OLD family endonuclease
1431	 41.36	0	1614728..1615636	+	302	152979119	-	Asuc_1454	-	protein of unknown function DUF340 membrane
1432	 50.16	+1	1615780..1616094	+	104	152979120	-	Asuc_1455	-	hypothetical protein
1433	 43.07	0	1616166..1617593	-	475	152979121	-	Asuc_1456	-	D-alanyl-D-alanine carboxypeptidase/endopeptidase
1434	 41.72	0	1617759..1618235	+	158	152979122	-	Asuc_1457	-	transcription elongation factor GreA
1435	 40.40	-1	1618288..1618584	-	98	152979123	-	Asuc_1458	-	hypothetical protein
1436	 45.06	0	1618689..1620641	-	650	152979124	-	Asuc_1459	-	ATP-dependent metalloprotease FtsH
1437	 44.02	0	1620733..1621359	-	208	152979125	-	Asuc_1460	-	23S rRNA methyltransferase J
1438	 40.17	-1	1621429..1622013	-	194	152979126	-	Asuc_1461	-	GmhA protein
1439	 43.89	0	1622026..1622385	-	119	152979127	-	Asuc_1462	-	hypothetical protein
1440	 42.32	0	1622390..1624114	-	574	152979128	-	Asuc_1463	-	LppC family lipoprotein
1441	 43.85	0	1624192..1625037	+	281	152979129	-	Asuc_1464	-	uroporphyrin-III C/tetrapyrrole methyltransferase
1442	 42.17	0	1625140..1626135	-	331	152979130	-	Asuc_1465	-	DNA-binding transcriptional regulator FruR
1443	 45.00	0	1626466..1628736	+	756	152979131	-	Asuc_1466	-	ribonucleotide-diphosphate reductase subunit alpha
1444	 37.20	-1	1628952..1630115	-	387	152979132	-	Asuc_1467	-	oligogalacturonide lyase
1445	 40.02	-1	1630193..1631926	-	577	152979133	-	Asuc_1468	-	Na+ symporter
45.47	MEAN

4.33	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.