IslandPath Analysis: Actinobacillus succinogenes 130Z



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.47   STD DEV: 4.33
Actinobacillus succinogenes 130Z, complete genome - 1..2319663
2079 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
88	 49.11	0	107448..107783	+	111	152977776	-	Asuc_0089	-	rhodanese domain-containing protein
89	 44.25	0	107762..108100	-	112	152977777	-	Asuc_0090	-	hypothetical protein
90	 45.55	0	108121..108996	+	291	152977778	-	Asuc_0091	-	rhomboid family protein
91	 44.93	0	109027..109785	+	252	152977779	-	Asuc_0092	-	DeoR family transcriptional regulator
92	 48.95	0	110602..111786	-	394	152977780	-	Asuc_0094	-	elongation factor Tu
93	 42.35	0	112470..113423	+	317	152977781	-	Asuc_0095	-	pantothenate kinase
94	 44.89	0	113571..115682	-	703	152977782	-	Asuc_0096	-	non-specific protein-tyrosine kinase
95	 45.50	0	115865..117031	-	388	152977783	-	Asuc_0097	-	polysaccharide export protein
96	 43.35	0	117052..118977	-	641	152977784	-	Asuc_0098	-	polysaccharide biosynthesis protein CapD
97	 45.94	0	118992..120173	-	393	152977785	-	Asuc_0099	-	DegT/DnrJ/EryC1/StrS aminotransferase
98	 41.55	0	120207..120851	-	214	152977786	-	Asuc_0100	-	HAD family hydrolase
99	 44.51	0	120841..121806	-	321	152977787	-	Asuc_0101	-	putative carbamoyl phosphate synthase large subunit
100	 44.50	0	121803..122402	-	199	152977788	-	Asuc_0102	-	undecaprenyl-phosphate galactose phosphotransferase
101	 36.29	-2	122399..123685	-	428	152977789	-	Asuc_0103	-	O-antigen polymerase
102	 42.55	0	123687..124868	-	393	152977790	-	Asuc_0104	-	glycosyl transferase group 1
103	 41.06	-1	124858..126165	-	435	152977791	-	Asuc_0105	-	polysaccharide biosynthesis protein
104	 44.47	0	126170..127327	-	385	152977792	-	Asuc_0106	-	glycosyl transferase group 1
105	 44.66	0	127327..128430	-	367	152977793	-	Asuc_0107	-	glycosyl transferase group 1
106	 48.28	0	128441..129517	-	358	152977794	-	Asuc_0108	-	glutamine--scyllo-inositol transaminase
107	 51.22	+1	129531..130106	-	191	152977795	-	Asuc_0109	-	hexapaptide repeat-containing transferase
108	 45.22	0	130315..131265	-	316	152977796	-	Asuc_0110	-	oxidoreductase domain-containing protein
109	 46.53	0	131284..132579	-	431	152977797	-	Asuc_0111	-	UDP-glucose/GDP-mannose dehydrogenase
110	 45.65	0	133361..133912	+	183	152977798	-	Asuc_0112	-	peptide deformylase
111	 51.57	+1	134391..135344	+	317	152977799	-	Asuc_0113	-	methionyl-tRNA formyltransferase
112	 52.99	+1	135413..136801	+	462	152977800	-	Asuc_0114	-	sun protein
113	 51.71	+1	136957..138969	+	670	152977801	-	Asuc_0115	-	OPT family oligopeptide transporter
114	 39.73	-1	139095..140891	-	598	152977802	-	Asuc_0116	-	hypothetical protein
115	 38.72	-1	140919..141605	-	228	152977803	-	Asuc_0117	-	cyclase family protein
116	 41.54	0	141617..142957	-	446	152977804	-	Asuc_0118	-	phospholipase/carboxylesterase
117	 48.78	0	143015..144367	-	450	152977805	-	Asuc_0119	-	gluconate transporter
118	 45.05	0	144529..145305	-	258	152977806	-	Asuc_0120	-	hydroxypyruvate isomerase
119	 47.55	0	145308..145940	-	210	152977807	-	Asuc_0121	-	putative aldolase
120	 47.95	0	145937..147181	-	414	152977808	-	Asuc_0122	-	type III effector Hrp-dependent outers
121	 48.62	0	147181..148083	-	300	152977809	-	Asuc_0123	-	6-phosphogluconate dehydrogenase NAD-binding
122	 44.27	0	148268..149026	+	252	152977810	-	Asuc_0124	-	DeoR family transcriptional regulator
123	 48.10	0	149169..151145	+	658	152977811	-	Asuc_0125	-	bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein
124	 45.19	0	151333..152091	-	252	152977812	-	Asuc_0126	-	DeoR family transcriptional regulator
125	 47.68	0	152249..152701	-	150	152977813	-	Asuc_0127	-	PTS system, glucose subfamily, IIA subunit
126	 45.87	0	152713..154068	-	451	152977814	-	Asuc_0128	-	sugar (glycoside-Pentoside-hexuronide) transporter
127	 49.09	0	154164..155762	-	532	152977815	-	Asuc_0129	-	carbohydrate kinase FGGY
128	 47.18	0	155843..156622	-	259	152977816	-	Asuc_0130	-	short-chain dehydrogenase/reductase SDR
129	 45.67	0	156799..157917	+	372	152977817	-	Asuc_0131	-	ROK family protein
130	 48.28	0	158130..160565	+	811	152977818	-	Asuc_0132	-	DNA gyrase subunit B
131	 48.97	0	160885..161760	-	291	152977819	-	Asuc_0133	-	alpha/beta hydrolase fold
132	 41.99	0	161772..162002	-	76	152977820	-	Asuc_0134	-	4-oxalocrotonate tautomerase
133	 47.99	0	162024..162596	-	190	152977821	-	Asuc_0135	-	NADP oxidoreductase coenzyme F420-dependent
134	 47.55	0	162712..163590	+	292	152977822	-	Asuc_0136	-	LysR family transcriptional regulator
135	 48.64	0	163587..164063	-	158	152977823	-	Asuc_0137	-	RNA methyltransferase
136	 41.31	0	164136..164348	-	70	152977824	-	Asuc_0138	-	hypothetical protein
137	 46.17	0	164456..164860	-	134	152977825	-	Asuc_0139	-	protein tyrosine phosphatase
138	 50.86	+1	165022..166071	-	349	152977826	-	Asuc_0140	-	L-asparaginase II
139	 45.94	0	166106..167533	-	475	152977827	-	Asuc_0141	-	aspartate ammonia-lyase
140	 50.11	+1	167817..169139	+	440	152977828	-	Asuc_0142	-	anaerobic C4-dicarboxylate transporter
141	 46.24	0	169242..170132	+	296	152977829	-	Asuc_0143	-	hypothetical protein
142	 49.09	0	170165..171649	+	494	152977830	-	Asuc_0144	-	cardiolipin synthetase
143	 44.30	0	171720..173123	-	467	152977831	-	Asuc_0145	-	glucuronate isomerase
144	 42.96	0	173431..174417	-	328	152977832	-	Asuc_0146	-	TRAP dicarboxylate transporter, DctP subunit
145	 43.90	0	174656..175147	+	163	152977833	-	Asuc_0147	-	tripartite ATP-independent periplasmic transporter DctQ
146	 43.86	0	175159..176460	+	433	152977834	-	Asuc_0148	-	TRAP dicarboxylate transporter, DctM subunit
147	 43.71	0	176471..178861	+	796	152977835	-	Asuc_0149	-	Alpha-glucosidase
148	 43.92	0	178864..179619	+	251	152977836	-	Asuc_0150	-	GntR domain-containing protein
149	 47.43	0	179645..180829	+	394	152977837	-	Asuc_0151	-	mannonate dehydratase
150	 54.77	+2	181006..181644	-	212	152977838	-	Asuc_0152	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
151	 53.25	+1	181674..182612	-	312	152977839	-	Asuc_0153	-	ribokinase-like domain-containing protein
152	 45.77	0	182624..184111	-	495	152977840	-	Asuc_0154	-	Altronate dehydratase
153	 43.90	0	184125..185582	-	485	152977841	-	Asuc_0155	-	altronate oxidoreductase
154	 39.98	-1	185604..186896	-	430	152977842	-	Asuc_0156	-	TRAP dicarboxylate transporter, DctM subunit
155	 29.88	-2	186899..187390	-	163	152977843	-	Asuc_0157	-	tripartite ATP-independent periplasmic transporter DctQ
156	 37.69	-1	187444..188430	-	328	152977844	-	Asuc_0158	-	TRAP dicarboxylate transporter, DctP subunit
157	 39.80	-1	188565..189569	-	334	152977845	-	Asuc_0159	-	alcohol dehydrogenase
158	 32.57	-2	189717..190628	+	303	152977846	-	Asuc_0160	-	GntR domain-containing protein
159	 48.43	0	190677..191186	-	169	152977847	-	Asuc_0161	-	GCN5-related N-acetyltransferase
160	 47.81	0	191189..192874	-	561	152977848	-	Asuc_0162	-	nitrate/nitrite sensor protein NarQ
161	 48.32	0	192989..193555	-	188	152977849	-	Asuc_0163	-	Ferritin Dps family protein
162	 48.45	0	193799..194089	+	96	152977850	-	Asuc_0164	-	hypothetical protein
163	 52.35	+1	194220..195455	+	411	152977851	-	Asuc_0165	-	chloride channel core
164	 49.44	0	195576..196991	-	471	152977852	-	Asuc_0166	-	glutamine synthetase, type I
165	 50.30	+1	197434..199284	+	616	152977853	-	Asuc_0167	-	GTP-binding protein TypA
166	 35.94	-2	199598..201019	-	473	152977854	-	Asuc_0168	-	hypothetical protein
167	 41.48	0	201042..202514	-	490	152977855	-	Asuc_0169	-	carbohydrate kinase FGGY
168	 39.96	-1	202530..203465	-	311	152977856	-	Asuc_0170	-	transketolase domain-containing protein
169	 38.27	-1	203458..204288	-	276	152977857	-	Asuc_0171	-	transketolase domain-containing protein
170	 37.67	-1	204470..205507	-	345	152977858	-	Asuc_0172	-	monosaccharide-transporting ATPase
171	 35.89	-2	205528..207051	-	507	152977859	-	Asuc_0173	-	ABC transporter related
172	 33.17	-2	207063..207659	-	198	152977860	-	Asuc_0174	-	putative lipoprotein
173	 37.73	-1	207716..208648	-	310	152977861	-	Asuc_0175	-	periplasmic binding protein/LacI transcriptional regulator
174	 35.32	-2	208793..209746	-	317	152977862	-	Asuc_0176	-	DeoR family transcriptional regulator
175	 39.69	-1	209847..210491	-	214	152977863	-	Asuc_0177	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
176	 51.06	+1	210975..212486	-	503	152977864	-	Asuc_0178	-	aminoacyl-histidine dipeptidase
177	 52.07	+1	212545..213003	+	152	152977865	-	Asuc_0179	-	xanthine-guanine phosphoribosyltransferase
178	 53.05	+1	213061..213765	+	234	152977866	-	Asuc_0180	-	molybdate ABC transporter permease protein
179	 52.30	+1	213765..214460	+	231	152977867	-	Asuc_0181	-	molybdate ABC transporter, ATPase subunit
180	 50.82	+1	214525..216240	-	571	152977868	-	Asuc_0182	-	prolyl-tRNA synthetase
181	 48.70	0	216637..218094	+	485	152977869	-	Asuc_0183	-	anion transporter
182	 48.46	0	218202..219272	+	356	152977870	-	Asuc_0184	-	hypothetical protein
183	 49.79	0	219437..222043	-	868	152977871	-	Asuc_0185	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
184	 44.35	0	222162..222905	+	247	152977872	-	Asuc_0186	-	GntR family transcriptional regulator
185	 48.38	0	223172..223789	-	205	152977873	-	Asuc_0187	-	glutathione S-transferase domain-containing protein
186	 47.92	0	223802..225049	-	415	152977874	-	Asuc_0188	-	diaminopimelate decarboxylase
187	 44.87	0	225059..225214	-	51	152977875	-	Asuc_0189	-	hypothetical protein
45.47	MEAN

4.33	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.