IslandPathversion 1.0

IslandPath Analysis: Actinobacillus succinogenes 130Z



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.47 STD DEV: 4.33
Actinobacillus succinogenes 130Z, complete genome - 1..2319663
2079 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1294	 46.83	0	1462574..1463440	-	288	152978982	-	Asuc_1316	-	LysR family transcriptional regulator
1295	 43.51	0	1463974..1465359	+	461	152978983	-	Asuc_1317	-	major facilitator transporter
1296	 46.53	0	1465519..1466397	-	292	152978984	-	Asuc_1318	-	LysR family transcriptional regulator
1297	 47.78	0	1466497..1467105	+	202	152978985	-	Asuc_1319	-	lysine exporter protein LysE/YggA
1298	 46.79	0	1467265..1467576	+	103	152978986	-	Asuc_1320	-	regulatory protein ArsR
1299	 51.25	+1	1467653..1468333	+	226	152978987	-	Asuc_1321	-	DSBA oxidoreductase
1300	 47.60	0	1468333..1468998	+	221	152978988	-	Asuc_1322	-	phospholipase/carboxylesterase
1301	 45.72	0	1469013..1470005	+	330	152978989	-	Asuc_1323	-	beta-lactamase domain-containing protein
1302	 49.58	0	1470070..1471251	+	393	152978990	-	Asuc_1324	-	major facilitator transporter
1303	 45.02	0	1471447..1472481	-	344	152978991	-	Asuc_1325	-	alpha/beta hydrolase domain-containing protein
1304	 42.81	0	1472649..1473545	+	298	152978992	-	Asuc_1326	-	hypothetical protein
1305	 45.75	0	1473618..1474487	-	289	152978993	-	Asuc_1327	-	fructosamine kinase
1306	 42.86	0	1474613..1475263	+	216	152978994	-	Asuc_1328	-	glutaredoxin 2
1307	 47.00	0	1475420..1477351	+	643	152978995	-	Asuc_1329	-	threonyl-tRNA synthetase
1308	 44.48	0	1477413..1478237	-	274	152978996	-	Asuc_1330	-	hypothetical protein
1309	 40.14	-1	1478283..1479251	+	322	152978997	-	Asuc_1331	-	polysaccharide pyruvyl transferase
1310	 39.18	-1	1479241..1480437	+	398	152978998	-	Asuc_1332	-	hypothetical protein
1311	 39.92	-1	1480439..1481212	+	257	152978999	-	Asuc_1333	-	glycosyl transferase family protein
1312	 41.33	0	1481212..1482399	+	395	152979000	-	Asuc_1334	-	hypothetical protein
1313	 41.72	0	1482399..1483280	+	293	152979001	-	Asuc_1335	-	glycosyl transferase family protein
1314	 43.46	0	1483283..1484092	+	269	152979002	-	Asuc_1336	-	glycosyl transferase family protein
1315	 46.24	0	1484095..1485225	+	376	152979003	-	Asuc_1337	-	lytic murein transglycosylase
1316	 43.04	0	1485309..1486091	+	260	152979004	-	Asuc_1338	-	arogenate dehydratase
1317	 48.69	0	1486243..1487082	-	279	152979005	-	Asuc_1339	-	carbohydrate kinase, YjeF related protein
1318	 44.97	0	1487154..1488098	-	314	152979006	-	Asuc_1340	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
1319	 43.79	0	1488176..1488682	+	168	152979007	-	Asuc_1341	-	hypothetical protein
1320	 46.37	0	1488679..1489614	-	311	152979008	-	Asuc_1342	-	lipid A biosynthesis lauroyl acyltransferase
1321	 48.22	0	1489795..1491225	+	476	152979009	-	Asuc_1343	-	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase
1322	 43.74	0	1491321..1492694	-	457	152979010	-	Asuc_1344	-	RND efflux system outer membrane lipoprotein
1323	 44.82	0	1492829..1494760	-	643	152979011	-	Asuc_1345	-	ABC transporter related
1324	 44.14	0	1494787..1495971	-	394	152979012	-	Asuc_1346	-	RND family efflux transporter MFP subunit
1325	 45.50	0	1496215..1496880	+	221	152979013	-	Asuc_1347	-	cell wall hydrolase/autolysin
1326	 46.37	0	1496955..1498634	+	559	152979014	-	Asuc_1348	-	glutaminyl-tRNA synthetase
1327	 36.05	-2	1498636..1498782	+	48	152979015	-	Asuc_1349	-	hypothetical protein
1328	 41.72	0	1498888..1499340	+	150	152979016	-	Asuc_1350	-	hypothetical protein
1329	 44.89	0	1499405..1501498	+	697	152979017	-	Asuc_1351	-	4-alpha-glucanotransferase
1330	 44.98	0	1501510..1503999	+	829	152979018	-	Asuc_1352	-	glycogen branching enzyme
1331	 43.21	0	1504050..1506053	+	667	152979019	-	Asuc_1353	-	glycogen debranching enzyme GlgX
1332	 41.98	0	1506318..1507613	+	431	152979020	-	Asuc_1354	-	glucose-1-phosphate adenylyltransferase
1333	 45.00	0	1507670..1509100	+	476	152979021	-	Asuc_1355	-	glycogen synthase
1334	 41.54	0	1509182..1511641	+	819	152979022	-	Asuc_1356	-	glycogen/starch/alpha-glucan phosphorylase
1335	 42.41	0	1511763..1512599	+	278	152979023	-	Asuc_1357	-	putative esterase
1336	 44.75	0	1512685..1513437	-	250	152979024	-	Asuc_1358	-	putative esterase
1337	 42.32	0	1513488..1514666	-	392	152979025	-	Asuc_1359	-	phosphoribosylglycinamide synthetase
1338	 46.81	0	1514866..1516134	+	422	152979026	-	Asuc_1360	-	serine hydroxymethyltransferase
1339	 44.73	0	1516152..1516388	+	78	152979027	-	Asuc_1361	-	hypothetical protein
1340	 47.10	0	1516493..1517182	+	229	152979028	-	Asuc_1362	-	hypothetical protein
1341	 45.08	0	1517270..1517950	+	226	152979029	-	Asuc_1363	-	two component transcriptional regulator
1342	 44.03	0	1517925..1519298	+	457	152979030	-	Asuc_1364	-	integral membrane sensor signal transduction histidine kinase
1343	 46.94	0	1519373..1520041	-	222	152979031	-	Asuc_1365	-	cell morphogenesis/cell wall metabolism regulator
1344	 45.98	0	1520211..1520708	-	165	152979032	-	Asuc_1366	-	PEBP family protein
1345	 41.39	0	1520808..1521266	+	152	152979033	-	Asuc_1367	-	transcriptional regulator NrdR
1346	 51.15	+1	1521263..1522390	+	375	152979034	-	Asuc_1368	-	riboflavin biosynthesis protein RibD
1347	 44.54	0	1522387..1523430	+	347	152979035	-	Asuc_1369	-	periplasmic serine protease DegS
1348	 40.99	-1	1523674..1524522	-	282	152979036	-	Asuc_1370	-	patatin
1349	 45.05	0	1524647..1525363	+	238	152979037	-	Asuc_1371	-	NAD-dependent deacetylase
1350	 46.49	0	1525509..1527362	-	617	152979038	-	Asuc_1372	-	1-deoxy-D-xylulose-5-phosphate synthase
1351	 44.11	0	1527368..1528258	-	296	152979039	-	Asuc_1373	-	polyprenyl synthetase
1352	 45.57	0	1528260..1528496	-	78	152979040	-	Asuc_1374	-	exodeoxyribonuclease VII small subunit
1353	 39.48	-1	1528564..1529442	+	292	152979041	-	Asuc_1375	-	glycosyl transferase family protein
1354	 43.30	0	1529435..1530217	-	260	152979042	-	Asuc_1376	-	hypothetical protein
1355	 44.54	0	1530227..1530958	-	243	152979043	-	Asuc_1377	-	molybdopterin biosynthesis protein MoeB
1356	 47.45	0	1530963..1532180	-	405	152979044	-	Asuc_1378	-	molybdenum cofactor synthesis domain-containing protein
1357	 44.57	0	1532349..1533149	+	266	152979045	-	Asuc_1379	-	exodeoxyribonuclease III
1358	 38.83	-1	1533149..1533931	+	260	152979046	-	Asuc_1380	-	hypothetical protein
1359	 44.97	0	1534011..1534895	+	294	152979047	-	Asuc_1381	-	acetyl-CoA carboxylase subunit beta
1360	 44.34	0	1534905..1536212	+	435	152979048	-	Asuc_1382	-	FolC bifunctional protein
1361	 45.74	0	1536254..1536898	-	214	152979049	-	Asuc_1383	-	phosphoglycerate mutase
1362	 44.01	0	1537033..1539645	+	870	152979050	-	Asuc_1384	-	aminopeptidase N
1363	 45.45	0	1539699..1540721	+	340	152979051	-	Asuc_1385	-	dihydroorotate dehydrogenase 2
1364	 44.02	0	1541676..1542227	-	183	152979052	-	Asuc_1387	-	nitroreductase
1365	 43.36	0	1542489..1543316	+	275	152979053	-	Asuc_1388	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
1366	 41.13	-1	1543516..1543977	+	153	152979054	-	Asuc_1389	-	late embryogenesis abundant protein
1367	 33.70	-2	1544061..1544330	+	89	152979055	-	Asuc_1390	-	hypothetical protein
1368	 38.20	-1	1544519..1545361	-	280	152979056	-	Asuc_1391	-	hypothetical protein
1369	 24.79	-2	1545418..1545534	-	38	152979057	-	Asuc_1392	-	hypothetical protein
1370	 46.21	0	1545676..1546374	-	232	152979058	-	Asuc_1393	-	phage transposase
1371	 38.58	-1	1546420..1546686	-	88	152979059	-	Asuc_1394	-	putative transcriptional regulator, Nlp
1372	 47.40	0	1546925..1547656	+	243	152979060	-	Asuc_1395	-	putative phage repressor
1373	 41.69	0	1548215..1549219	-	334	152979061	-	Asuc_1396	-	periplasmic binding protein/LacI transcriptional regulator
1374	 42.24	0	1549451..1550752	+	433	152979062	-	Asuc_1397	-	galactoside permease
1375	 42.72	0	1550763..1553786	+	1007	152979063	-	Asuc_1398	-	glycoside hydrolase family protein
1376	 45.01	0	1553851..1556463	-	870	152979064	-	Asuc_1399	-	DNA topoisomerase I
1377	 43.43	0	1556713..1558128	-	471	152979065	-	Asuc_1400	-	exonuclease I
1378	 39.94	-1	1558197..1558544	-	115	152979066	-	Asuc_1401	-	hypothetical protein
1379	 42.30	0	1558627..1559496	-	289	152979067	-	Asuc_1402	-	putative permease
1380	 48.48	0	1559579..1564114	-	1511	152979068	-	Asuc_1403	-	cell division protein MukB
1381	 48.24	0	1564114..1564851	-	245	152979069	-	Asuc_1404	-	condesin subunit E
1382	 47.49	0	1564917..1566251	-	444	152979070	-	Asuc_1405	-	condesin subunit F
1383	 43.56	0	1566471..1567409	+	312	152979071	-	Asuc_1406	-	PP-loop domain-containing protein
1384	 45.04	0	1567655..1569781	+	708	152979072	-	Asuc_1407	-	anaerobic ribonucleoside triphosphate reductase
1385	 30.09	-2	1569811..1570674	+	287	152979073	-	Asuc_1408	-	hypothetical protein
1386	 47.80	0	1570705..1571181	+	158	152979074	-	Asuc_1409	-	anaerobic ribonucleotide reductase-activating protein
1387	 42.21	0	1571246..1571977	-	243	152979075	-	Asuc_1410	-	acid phosphatase/phosphotransferase
1388	 46.01	0	1572114..1572902	-	262	152979076	-	Asuc_1411	-	TatD-related deoxyribonuclease
1389	 47.86	0	1573090..1573674	+	194	152979077	-	Asuc_1412	-	peptidyl-tRNA hydrolase
1390	 47.89	0	1573776..1574867	+	363	152979078	-	Asuc_1413	-	translation-associated GTPase
1391	 41.61	0	1574925..1575371	+	148	152979079	-	Asuc_1414	-	putative protein-S-isoprenylcysteine methyltransferase
1392	 48.77	0	1575381..1576274	+	297	152979080	-	Asuc_1415	-	homocysteine S-methyltransferase
1393	 45.46	0	1576336..1577745	+	469	152979081	-	Asuc_1416	-	amino acid permease-associated region
45.47	MEAN

4.33	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.