IslandPathversion 1.0

IslandPath Analysis: Actinobacillus succinogenes 130Z



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.47 STD DEV: 4.33
Actinobacillus succinogenes 130Z, complete genome - 1..2319663
2079 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1206	 38.98	-1	1376899..1377819	+	306	152978894	-	Asuc_1227	-	antirepressor protein
1207	 34.72	-2	1377975..1378553	-	192	152978895	-	Asuc_1228	-	hypothetical protein
1208	 45.38	0	1378791..1379180	+	129	152978896	-	Asuc_1229	-	phage holin
1209	 44.44	0	1379200..1379748	+	182	152978897	-	Asuc_1230	-	LysM domain-containing protein
1210	 42.91	0	1380096..1380377	+	93	152978898	-	Asuc_1232	-	hypothetical protein
1211	 41.37	0	1380387..1380635	+	82	152978899	-	Asuc_1233	-	hypothetical protein
1212	 44.73	0	1380616..1380966	+	116	152978900	-	Asuc_1234	-	HNH endonuclease
1213	 44.65	0	1381082..1381576	+	164	152978901	-	Asuc_1235	-	P27 family phage terminase small subunit
1214	 45.19	0	1381564..1383267	+	567	152978902	-	Asuc_1236	-	phage terminase
1215	 48.37	0	1383264..1383416	+	50	152978903	-	Asuc_1237	-	hypothetical protein
1216	 45.54	0	1383413..1384633	+	406	152978904	-	Asuc_1238	-	HK97 family phage portal protein
1217	 47.43	0	1384626..1385228	+	200	152978905	-	Asuc_1239	-	HK97 family phage prohead protease
1218	 45.56	0	1385293..1386519	+	408	152978906	-	Asuc_1240	-	HK97 family phage major capsid protein
1219	 42.99	0	1386568..1386888	+	106	152978907	-	Asuc_1241	-	uncharacterized phage protein
1220	 47.80	0	1386885..1387202	+	105	152978908	-	Asuc_1242	-	phage head-tail adaptor, putative
1221	 51.55	+1	1387202..1387684	+	160	152978909	-	Asuc_1243	-	HK97 family phage protein
1222	 44.64	0	1387686..1388030	+	114	152978910	-	Asuc_1244	-	hypothetical protein
1223	 45.21	0	1388034..1388690	+	218	152978911	-	Asuc_1245	-	hypothetical protein
1224	 38.24	-1	1388751..1389158	+	135	152978912	-	Asuc_1246	-	hypothetical protein
1225	 37.08	-1	1389167..1389433	+	88	152978913	-	Asuc_1247	-	hypothetical protein
1226	 32.56	-2	1389478..1389735	+	85	152978914	-	Asuc_1248	-	hypothetical protein
1227	 44.98	0	1389792..1393088	+	1098	152978915	-	Asuc_1249	-	phage tape measure protein
1228	 44.05	0	1393098..1393433	+	111	152978916	-	Asuc_1250	-	phage minor tail family protein
1229	 44.99	0	1393433..1394170	+	245	152978917	-	Asuc_1251	-	phage minor tail protein L
1230	 42.31	0	1394172..1394951	+	259	152978918	-	Asuc_1252	-	NLP/P60 protein
1231	 43.19	0	1394885..1395493	+	202	152978919	-	Asuc_1253	-	bacteriophage lambda tail assembly I
1232	 44.64	0	1395564..1399535	+	1323	152978920	-	Asuc_1254	-	hypothetical protein
1233	 36.52	-2	1399532..1399813	+	93	152978921	-	Asuc_1255	-	hypothetical protein
1234	 37.49	-1	1399800..1400810	+	336	152978922	-	Asuc_1256	-	hypothetical protein
1235	 41.59	0	1400823..1401161	+	112	152978923	-	Asuc_1257	-	hypothetical protein
1236	 40.26	-1	1401199..1402482	-	427	152978924	-	Asuc_1258	-	phage integrase family protein
1237	 42.90	0	1403089..1403412	-	107	152978925	-	Asuc_1259	-	dsDNA-mimic protein
1238	 46.94	0	1403422..1404237	-	271	152978926	-	Asuc_1260	-	Cof-like hydrolase
1239	 46.89	0	1404352..1405251	-	299	152978927	-	Asuc_1261	-	formate dehydrogenase accessory protein FdhE
1240	 45.12	0	1405482..1406168	-	228	152978928	-	Asuc_1262	-	formate dehydrogenase, gamma subunit
1241	 49.42	0	1406161..1407105	-	314	152978929	-	Asuc_1263	-	formate dehydrogenase, beta subunit
1242	 46.02	0	1407105..1409531	-	808	152978930	-	Asuc_1264	-	formate dehydrogenase, alpha subunit
1243	 51.36	+1	1409580..1410167	-	195	152978931	-	Asuc_1265	-	formate dehydrogenase
1244	 47.37	0	1410471..1411289	+	272	152978932	-	Asuc_1266	-	formate dehydrogenase family accessory protein FdhD
1245	 45.81	0	1411390..1412439	-	349	152978933	-	Asuc_1267	-	extracellular solute-binding protein
1246	 47.36	0	1412698..1414893	+	731	152978934	-	Asuc_1268	-	DNA-dependent helicase II
1247	 46.08	0	1414963..1416405	-	480	152978935	-	Asuc_1269	-	bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase
1248	 50.10	+1	1416428..1417429	-	333	152978936	-	Asuc_1270	-	anthranilate phosphoribosyltransferase
1249	 47.45	0	1417480..1418067	-	195	152978937	-	Asuc_1271	-	anthranilate synthase component II
1250	 46.24	0	1418078..1419619	-	513	152978938	-	Asuc_1272	-	anthranilate synthase component I
1251	 46.06	0	1419851..1420777	+	308	152978939	-	Asuc_1273	-	ABC transporter related
1252	 42.58	0	1420774..1421541	+	255	152978940	-	Asuc_1274	-	ABC-2 type transporter
1253	 44.73	0	1421620..1422681	+	353	152978941	-	Asuc_1275	-	putative periplasmic protease
1254	 42.40	0	1422813..1423661	+	282	152978942	-	Asuc_1276	-	SmpA/OmlA domain-containing protein
1255	 47.03	0	1423900..1425045	+	381	152978943	-	Asuc_1277	-	hydrogenase 2 small subunit
1256	 47.03	0	1425065..1426057	+	330	152978944	-	Asuc_1278	-	hydrogenase 2 protein HybA
1257	 42.66	0	1426050..1427261	+	403	152978945	-	Asuc_1279	-	putative hydrogenase 2 b cytochrome subunit
1258	 47.08	0	1427277..1428986	+	569	152978946	-	Asuc_1280	-	hydrogenase 2 large subunit
1259	 45.81	0	1428986..1429474	+	162	152978947	-	Asuc_1281	-	hydrogenase 2 maturation endopeptidase
1260	 48.52	0	1429483..1429989	+	168	152978948	-	Asuc_1282	-	hydrogenase 2-specific chaperone
1261	 46.89	0	1430015..1430287	+	90	152978949	-	Asuc_1283	-	hydrogenase 2 accessory protein HypG
1262	 46.51	0	1430489..1432924	+	811	152978950	-	Asuc_1284	-	CRISPR-associated helicase Cas3
1263	 49.60	0	1432939..1433682	+	247	152978951	-	Asuc_1285	-	CRISPR-associated Cas5 family protein
1264	 43.22	0	1433679..1435742	+	687	152978952	-	Asuc_1286	-	CRISPR-associated RAMP Csd1 family protein
1265	 50.60	+1	1435764..1436603	+	279	152978953	-	Asuc_1287	-	CRISPR-associated Csd2 family protein
1266	 56.00	+2	1436604..1437278	+	224	152978954	-	Asuc_1288	-	CRISPR-associated Cas4 family protein
1267	 51.13	+1	1437319..1437627	-	102	152978955	-	Asuc_1289	-	carboxymuconolactone decarboxylase
1268	 51.16	+1	1437880..1438266	+	128	152978956	-	Asuc_1290	-	HxlR family transcriptional regulator
1269	 33.67	-2	1438455..1439357	+	300	152978957	-	Asuc_1291	-	hypothetical protein
1270	 53.94	+1	1439371..1440384	+	337	152978958	-	Asuc_1292	-	CRISPR-associated Cas1 family protein
1271	 47.28	0	1440424..1440717	+	97	152978959	-	Asuc_1293	-	CRISPR-associated Cas2 family protein
1272	 47.08	0	1441746..1443149	-	467	152978960	-	Asuc_1294	-	asparaginyl-tRNA synthetase
1273	 41.90	0	1443396..1444049	+	217	152978961	-	Asuc_1295	-	GTP cyclohydrolase I
1274	 53.86	+1	1444152..1444643	-	163	152978962	-	Asuc_1296	-	YbaK/prolyl-tRNA synthetase associated region
1275	 52.42	+1	1444653..1445747	-	364	152978963	-	Asuc_1297	-	pyridoxal-5'-phosphate-dependent protein beta subunit
1276	 47.93	0	1445758..1446120	-	120	152978964	-	Asuc_1298	-	endoribonuclease L-PSP
1277	 42.31	0	1446120..1446743	-	207	152978965	-	Asuc_1299	-	YheO domain-containing protein
1278	 42.93	0	1447178..1448386	-	402	152978966	-	Asuc_1300	-	ATPase
1279	 54.17	+2	1448775..1449134	+	119	152978967	-	Asuc_1301	-	rhodanese domain-containing protein
1280	 51.82	+1	1449220..1449933	-	237	152978968	-	Asuc_1302	-	B3/4 domain-containing protein
1281	 45.75	0	1450174..1451502	-	442	152978969	-	Asuc_1303	-	citrate transporter
1282	 49.33	0	1452081..1452830	+	249	152978970	-	Asuc_1304	-	short-chain dehydrogenase/reductase SDR
1283	 45.92	0	1452944..1453531	+	195	152978971	-	Asuc_1305	-	NAD(P)H dehydrogenase (quinone)
1284	 45.68	0	1453585..1454532	+	315	152978972	-	Asuc_1306	-	aldo/keto reductase
1285	 42.03	0	1454630..1454767	+	45	152978973	-	Asuc_1307	-	hypothetical protein
1286	 46.48	0	1454769..1455833	+	354	152978974	-	Asuc_1308	-	carboxymuconolactone decarboxylase
1287	 44.58	0	1455979..1456734	+	251	152978975	-	Asuc_1309	-	hypothetical protein
1288	 41.60	0	1456968..1457354	+	128	152978976	-	Asuc_1310	-	DoxX family protein
1289	 50.11	+1	1457581..1458456	+	291	152978977	-	Asuc_1311	-	LysR family transcriptional regulator
1290	 52.87	+1	1458551..1459333	+	260	152978978	-	Asuc_1312	-	MerR family transcriptional regulator
1291	 49.46	0	1459291..1460772	-	493	152978979	-	Asuc_1313	-	multi anti extrusion protein MatE
1292	 41.67	0	1460868..1461131	+	87	152978980	-	Asuc_1314	-	helix-turn-helix domain-containing protein
1293	 42.07	0	1461125..1462417	+	430	152978981	-	Asuc_1315	-	HipA domain-containing protein
1294	 46.83	0	1462574..1463440	-	288	152978982	-	Asuc_1316	-	LysR family transcriptional regulator
1295	 43.51	0	1463974..1465359	+	461	152978983	-	Asuc_1317	-	major facilitator transporter
1296	 46.53	0	1465519..1466397	-	292	152978984	-	Asuc_1318	-	LysR family transcriptional regulator
1297	 47.78	0	1466497..1467105	+	202	152978985	-	Asuc_1319	-	lysine exporter protein LysE/YggA
1298	 46.79	0	1467265..1467576	+	103	152978986	-	Asuc_1320	-	regulatory protein ArsR
1299	 51.25	+1	1467653..1468333	+	226	152978987	-	Asuc_1321	-	DSBA oxidoreductase
1300	 47.60	0	1468333..1468998	+	221	152978988	-	Asuc_1322	-	phospholipase/carboxylesterase
1301	 45.72	0	1469013..1470005	+	330	152978989	-	Asuc_1323	-	beta-lactamase domain-containing protein
1302	 49.58	0	1470070..1471251	+	393	152978990	-	Asuc_1324	-	major facilitator transporter
1303	 45.02	0	1471447..1472481	-	344	152978991	-	Asuc_1325	-	alpha/beta hydrolase domain-containing protein
1304	 42.81	0	1472649..1473545	+	298	152978992	-	Asuc_1326	-	hypothetical protein
1305	 45.75	0	1473618..1474487	-	289	152978993	-	Asuc_1327	-	fructosamine kinase
45.47	MEAN

4.33	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.