IslandPathversion 1.0

IslandPath Analysis: Actinobacillus succinogenes 130Z



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.47 STD DEV: 4.33
Actinobacillus succinogenes 130Z, complete genome - 1..2319663
2079 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1055	 39.97	-1	1175941..1176708	+	255	152978743	-	Asuc_1071	-	hypothetical protein
1056	 43.26	0	1176777..1177421	-	214	152978744	-	Asuc_1072	-	hypothetical protein
1057	 43.08	0	1177492..1178496	-	334	152978745	-	Asuc_1073	-	fructose-1,6-bisphosphatase
1058	 43.40	0	1178752..1180122	+	456	152978746	-	Asuc_1074	-	UDP-N-acetylmuramate
1059	 37.91	-1	1185840..1187042	-	400	152978747	-	Asuc_1075	-	polynucleotide adenylyltransferase region
1060	 39.05	-1	1187095..1187706	-	203	152978748	-	Asuc_1076	-	SH3 type 3 domain-containing protein
1061	 44.68	0	1187770..1189038	-	422	152978749	-	Asuc_1077	-	phosphate transporter
1062	 43.76	0	1189053..1189733	-	226	152978750	-	Asuc_1078	-	hypothetical protein
1063	 41.88	0	1189888..1190964	+	358	152978751	-	Asuc_1079	-	adenylate cyclase
1064	 49.78	0	1190930..1192309	+	459	152978752	-	Asuc_1080	-	DNA repair protein RadA
1065	 45.20	0	1192412..1195066	-	884	152978753	-	Asuc_1081	-	hypothetical protein
1066	 42.16	0	1195044..1196300	-	418	152978754	-	Asuc_1082	-	PqiA family integral membrane protein
1067	 44.54	0	1196485..1197153	+	222	152978755	-	Asuc_1083	-	putative solute/DNA competence effector
1068	 41.43	0	1197255..1199330	+	691	152978756	-	Asuc_1084	-	carboxy-terminal protease
1069	 40.81	-1	1199395..1200879	+	494	152978757	-	Asuc_1085	-	hypothetical protein
1070	 44.56	0	1200994..1201554	+	186	152978758	-	Asuc_1086	-	hypothetical protein
1071	 41.23	0	1201609..1202241	+	210	152978759	-	Asuc_1087	-	beta-lactamase domain-containing protein
1072	 41.21	0	1203093..1204361	+	422	152978760	-	Asuc_1088	-	hypothetical protein
1073	 41.56	0	1204406..1206484	-	692	152978761	-	Asuc_1089	-	excinuclease ABC subunit B
1074	 42.78	0	1207172..1208134	+	320	152978762	-	Asuc_1090	-	CaCA family Na(+)/Ca(+) antiporter
1075	 47.09	0	1208253..1209386	-	377	152978763	-	Asuc_1091	-	chaperone protein DnaJ
1076	 45.34	0	1209632..1211539	-	635	152978764	-	Asuc_1092	-	chaperone protein DnaK
1077	 43.51	0	1211875..1212798	-	307	152978765	-	Asuc_1093	-	hypothetical protein
1078	 47.11	0	1212823..1214550	-	575	152978766	-	Asuc_1094	-	arginyl-tRNA synthetase
1079	 46.80	0	1214657..1215532	-	291	152978767	-	Asuc_1095	-	acyl-CoA thioesterase II
1080	 47.65	0	1215779..1217503	-	574	152978768	-	Asuc_1096	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
1081	 47.53	0	1217609..1219369	-	586	152978769	-	Asuc_1097	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
1082	 45.22	0	1219456..1219800	-	114	152978770	-	Asuc_1098	-	hypothetical protein
1083	 45.00	0	1219956..1220435	+	159	152978771	-	Asuc_1099	-	leucine-responsive transcriptional regulator
1084	 49.89	+1	1220437..1223268	+	943	152978772	-	Asuc_1100	-	cell divisionFtsK/SpoIIIE
1085	 45.14	0	1223326..1223952	+	208	152978773	-	Asuc_1101	-	outer-membrane lipoprotein carrier protein
1086	 50.52	+1	1224019..1225362	+	447	152978774	-	Asuc_1102	-	recombination factor protein RarA
1087	 49.01	0	1225388..1226554	+	388	152978775	-	Asuc_1103	-	N-acetylglucosamine-6-phosphate deacetylase
1088	 46.59	0	1226716..1228005	+	429	152978776	-	Asuc_1104	-	seryl-tRNA synthetase
1089	 45.72	0	1228020..1229036	+	338	152978777	-	Asuc_1105	-	auxin efflux carrier
1090	 47.71	0	1229086..1229892	-	268	152978778	-	Asuc_1106	-	aldose 1-epimerase
1091	 46.16	0	1229978..1231903	+	641	152978779	-	Asuc_1107	-	helicase c2
1092	 51.05	+1	1231908..1232624	+	238	152978780	-	Asuc_1108	-	peptidase M22 glycoprotease
1093	 45.30	0	1232675..1233301	+	208	152978781	-	Asuc_1109	-	Slp family outer membrane lipoprotein
1094	 44.35	0	1233336..1235024	+	562	152978782	-	Asuc_1110	-	long-chain-fatty-acid--CoA ligase
1095	 45.49	0	1235109..1236260	+	383	152978783	-	Asuc_1111	-	ribonuclease D
1096	 40.17	-1	1236253..1236852	+	199	152978784	-	Asuc_1112	-	hypothetical protein
1097	 41.19	0	1236849..1237166	+	105	152978785	-	Asuc_1113	-	hypothetical protein
1098	 50.22	+1	1237190..1237651	+	153	152978786	-	Asuc_1114	-	17 kDa surface antigen
1099	 46.48	0	1237755..1239374	+	539	152978787	-	Asuc_1115	-	4-phytase
1100	 44.72	0	1239478..1240785	+	435	152978788	-	Asuc_1116	-	glutamyl-tRNA reductase
1101	 44.72	0	1240876..1241604	+	242	152978789	-	Asuc_1117	-	dithiobiotin synthetase
1102	 44.57	0	1241641..1242192	-	183	152978790	-	Asuc_1118	-	hypothetical protein
1103	 44.74	0	1242806..1243261	+	151	152978791	-	Asuc_1119	-	hypothetical protein
1104	 48.70	0	1243288..1244823	+	511	152978792	-	Asuc_1120	-	transcription elongation factor NusA
1105	 49.05	0	1244836..1247349	+	837	152978793	-	Asuc_1121	-	translation initiation factor IF-2
1106	 46.41	0	1247472..1247861	+	129	152978794	-	Asuc_1122	-	ribosome-binding factor A
1107	 50.64	+1	1247861..1248796	+	311	152978795	-	Asuc_1123	-	tRNA pseudouridine synthase B
1108	 45.10	0	1248810..1249718	+	302	152978796	-	Asuc_1124	-	hypothetical protein
1109	 51.01	+1	1249751..1251034	-	427	152978797	-	Asuc_1125	-	tRNA(Ile)-lysidine synthetase
1110	 48.90	0	1251192..1252052	-	286	152978798	-	Asuc_1126	-	pyridoxal kinase
1111	 49.69	0	1252153..1253106	-	317	152978799	-	Asuc_1127	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
1112	 45.73	0	1253318..1253938	-	206	152978800	-	Asuc_1128	-	hypothetical protein
1113	 48.42	0	1254249..1255262	+	337	152978801	-	Asuc_1129	-	thiamine ABC transporter, periplasmic binding protein
1114	 49.94	+1	1255262..1256881	+	539	152978802	-	Asuc_1130	-	thiamine transporter membrane protein
1115	 48.42	0	1256874..1257536	+	220	152978803	-	Asuc_1131	-	ABC transporter ATP-binding protein
1116	 50.05	+1	1257539..1258555	+	338	152978804	-	Asuc_1132	-	biotin synthase
1117	 49.44	0	1258640..1258999	+	119	152978805	-	Asuc_1133	-	hypothetical protein
1118	 47.76	0	1259072..1259674	-	200	152978806	-	Asuc_1134	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
1119	 50.17	+1	1259828..1261021	+	397	152978807	-	Asuc_1135	-	cystathionine beta-lyase
1120	 50.59	+1	1261138..1262325	-	395	152978808	-	Asuc_1136	-	iron-containing alcohol dehydrogenase
1121	 42.12	0	1262748..1263839	+	363	152978809	-	Asuc_1137	-	porin
1122	 49.67	0	1264430..1264729	+	99	152978810	-	Asuc_1139	-	XRE family plasmid maintenance system antidote protein
1123	 50.64	+1	1264875..1266278	-	467	152978811	-	Asuc_1140	-	RND efflux system outer membrane lipoprotein
1124	 45.07	0	1266383..1267507	-	374	152978812	-	Asuc_1141	-	ABC-2 type transporter
1125	 49.40	0	1267511..1270255	-	914	152978813	-	Asuc_1142	-	ABC transporter related
1126	 51.83	+1	1270255..1271238	-	327	152978814	-	Asuc_1143	-	secretion protein HlyD family protein
1127	 38.45	-1	1271395..1271961	+	188	152978815	-	Asuc_1144	-	TetR family transcriptional regulator
1128	 51.25	+1	1272006..1273724	+	572	152978816	-	Asuc_1145	-	thiol:disulfide interchange protein precursor
1129	 52.08	+1	1273738..1274628	+	296	152978817	-	Asuc_1146	-	Dyp-type peroxidase family protein
1130	 50.28	+1	1274763..1276361	+	532	152978818	-	Asuc_1147	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
1131	 50.78	+1	1276870..1278159	+	429	152978819	-	Asuc_1148	-	phosphoribosylamine--glycine ligase
1132	 51.78	+1	1278229..1279101	-	290	152978820	-	Asuc_1149	-	LysR family transcriptional regulator
1133	 45.75	0	1279229..1280170	-	313	152978821	-	Asuc_1150	-	auxin efflux carrier
1134	 47.46	0	1280296..1280748	+	150	152978822	-	Asuc_1151	-	hypothetical protein
1135	 48.54	0	1280821..1284759	+	1312	152978823	-	Asuc_1152	-	ATP-dependent RNA helicase HrpA
1136	 26.23	-2	1285279..1285926	+	215	152978824	-	Asuc_1153	-	glycosyl transferase family protein
1137	 48.26	0	1286211..1286726	-	171	152978825	-	Asuc_1154	-	carbohydrate kinase
1138	 48.37	0	1286952..1287995	+	347	152978826	-	Asuc_1155	-	L-idonate 5-dehydrogenase
1139	 49.93	+1	1288007..1288771	+	254	152978827	-	Asuc_1156	-	gluconate 5-dehydrogenase
1140	 50.67	+1	1288794..1290143	+	449	152978828	-	Asuc_1157	-	gluconate transporter
1141	 49.77	0	1290754..1306533	+	5259	152978829	-	Asuc_1158	-	YadA domain-containing protein
1142	 47.84	0	1306728..1307678	+	316	152978830	-	Asuc_1159	-	bile acid:sodium symporter
1143	 49.68	0	1308139..1309533	+	464	152978831	-	Asuc_1160	-	protease Do
1144	 52.08	+1	1309730..1311505	+	591	152978832	-	Asuc_1161	-	gamma-glutamyltransferase
1145	 47.47	0	1311661..1312827	+	388	152978833	-	Asuc_1162	-	hypothetical protein
1146	 44.44	0	1313097..1314086	+	329	152978834	-	Asuc_1163	-	TRAP dicarboxylate transporter- DctP subunit
1147	 36.02	-2	1314106..1314588	+	160	152978835	-	Asuc_1164	-	tripartite ATP-independent periplasmic transporter DctQ
1148	 42.37	0	1314599..1315870	+	423	152978836	-	Asuc_1165	-	TRAP dicarboxylate transporter, DctM subunit
1149	 39.92	-1	1315877..1316893	+	338	152978837	-	Asuc_1166	-	regulatory protein LacI
1150	 44.34	0	1316893..1317837	+	314	152978838	-	Asuc_1167	-	ribokinase-like domain-containing protein
1151	 39.38	-1	1317847..1318821	+	324	152978839	-	Asuc_1168	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
1152	 52.80	+1	1318986..1320341	-	451	152978840	-	Asuc_1169	-	hypothetical protein
1153	 42.86	0	1320351..1320623	-	90	152978841	-	Asuc_1170	-	hypothetical protein
1154	 48.50	0	1320851..1322287	+	478	152978842	-	Asuc_1171	-	pyruvate kinase
45.47	MEAN

4.33	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.