IslandPathversion 1.0

IslandPath Analysis: Actinobacillus succinogenes 130Z



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.47 STD DEV: 4.33
Actinobacillus succinogenes 130Z, complete genome - 1..2319663
2079 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1017	 45.36	0	1124691..1125089	-	132	152978705	-	Asuc_1033	-	MerR family transcriptional regulator
1018	 49.08	0	1125160..1127928	+	922	152978706	-	Asuc_1034	-	copper-translocating P-type ATPase
1019	 42.84	0	1128051..1129985	+	644	152978707	-	Asuc_1035	-	ABC transporter ATPase component
1020	 32.99	-2	1136293..1137174	-	293	152978708	-	Asuc_1036	-	formyltetrahydrofolate deformylase
1021	 36.36	-2	1137210..1137605	-	131	152978709	-	Asuc_1037	-	histone family protein nucleoid-structuring protein H-NS
1022	 41.34	0	1137709..1139319	+	536	152978710	-	Asuc_1038	-	Na+ antiporter NhaC
1023	 44.27	0	1139564..1141282	+	572	152978711	-	Asuc_1039	-	acetolactate synthase 3 catalytic subunit
1024	 41.67	0	1141293..1141784	+	163	152978712	-	Asuc_1040	-	acetolactate synthase 3 regulatory subunit
1025	 35.71	-2	1141844..1143397	+	517	152978713	-	Asuc_1041	-	sulfatase
1026	 41.67	0	1143451..1143714	-	87	152978714	-	Asuc_1042	-	glutaredoxin 1
1027	 39.59	-1	1144173..1144715	+	180	152978715	-	Asuc_1043	-	hypothetical protein
1028	 45.84	0	1144766..1147843	-	1025	152978716	-	Asuc_1044	-	FAD linked oxidase domain-containing protein
1029	 43.14	0	1148292..1149362	+	356	152978717	-	Asuc_1045	-	OmpA domain-containing protein
1030	 40.21	-1	1149465..1150046	+	193	152978718	-	Asuc_1046	-	LemA family protein
1031	 42.69	0	1150099..1150536	+	145	152978719	-	Asuc_1047	-	hypothetical protein
1032	 46.12	0	1150529..1151326	+	265	152978720	-	Asuc_1048	-	hypothetical protein
1033	 44.34	0	1151409..1151735	+	108	152978721	-	Asuc_1049	-	glutaredoxin-like protein
1034	 43.23	0	1151866..1152825	-	319	152978722	-	Asuc_1050	-	preprotein translocase subunit SecF
1035	 47.60	0	1152841..1154691	-	616	152978723	-	Asuc_1051	-	preprotein translocase subunit SecD
1036	 37.33	-1	1154716..1155015	-	99	152978724	-	Asuc_1052	-	preprotein translocase subunit YajC
1037	 40.64	-1	1155159..1155377	-	72	152978725	-	Asuc_1053	-	SirA family protein
1038	 46.02	0	1155380..1155781	-	133	152978726	-	Asuc_1054	-	hypothetical protein
1039	 46.02	0	1155907..1156434	-	175	152978727	-	Asuc_1055	-	hemerythrin HHE cation binding domain-containing protein
1040	 48.42	0	1156545..1157684	-	379	152978728	-	Asuc_1056	-	queuine tRNA-ribosyltransferase
1041	 48.03	0	1157852..1158994	-	380	152978729	-	Asuc_1057	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1042	 48.42	0	1159120..1159563	+	147	152978730	-	Asuc_1058	-	DNA polymerase III subunit chi
1043	 45.54	0	1159564..1159989	+	141	152978731	-	Asuc_1059	-	GCN5-related N-acetyltransferase
1044	 46.33	0	1160206..1163052	+	948	152978732	-	Asuc_1060	-	valyl-tRNA synthetase
1045	 48.87	0	1163123..1164358	-	411	152978733	-	Asuc_1061	-	allantoate amidohydrolase
1046	 46.95	0	1164473..1165177	+	234	152978734	-	Asuc_1062	-	peptidase E
1047	 49.57	0	1165189..1166481	+	430	152978735	-	Asuc_1063	-	anaerobic c4-dicarboxylate antiporter
1048	 50.20	+1	1166685..1167953	+	422	152978736	-	Asuc_1064	-	amidohydrolase
1049	 48.55	0	1168182..1169666	+	494	152978737	-	Asuc_1065	-	aldehyde dehydrogenase
1050	 46.21	0	1169827..1171806	-	659	152978738	-	Asuc_1066	-	exoribonuclease II
1051	 48.80	0	1171901..1172689	-	262	152978739	-	Asuc_1067	-	short-chain dehydrogenase/reductase SDR
1052	 46.17	0	1172851..1173621	-	256	152978740	-	Asuc_1068	-	hypothetical protein
1053	 48.65	0	1173667..1174554	-	295	152978741	-	Asuc_1069	-	HflC protein
1054	 48.92	0	1174554..1175753	-	399	152978742	-	Asuc_1070	-	HflK protein
1055	 39.97	-1	1175941..1176708	+	255	152978743	-	Asuc_1071	-	hypothetical protein
1056	 43.26	0	1176777..1177421	-	214	152978744	-	Asuc_1072	-	hypothetical protein
1057	 43.08	0	1177492..1178496	-	334	152978745	-	Asuc_1073	-	fructose-1,6-bisphosphatase
1058	 43.40	0	1178752..1180122	+	456	152978746	-	Asuc_1074	-	UDP-N-acetylmuramate
1059	 37.91	-1	1185840..1187042	-	400	152978747	-	Asuc_1075	-	polynucleotide adenylyltransferase region
1060	 39.05	-1	1187095..1187706	-	203	152978748	-	Asuc_1076	-	SH3 type 3 domain-containing protein
1061	 44.68	0	1187770..1189038	-	422	152978749	-	Asuc_1077	-	phosphate transporter
1062	 43.76	0	1189053..1189733	-	226	152978750	-	Asuc_1078	-	hypothetical protein
1063	 41.88	0	1189888..1190964	+	358	152978751	-	Asuc_1079	-	adenylate cyclase
1064	 49.78	0	1190930..1192309	+	459	152978752	-	Asuc_1080	-	DNA repair protein RadA
1065	 45.20	0	1192412..1195066	-	884	152978753	-	Asuc_1081	-	hypothetical protein
1066	 42.16	0	1195044..1196300	-	418	152978754	-	Asuc_1082	-	PqiA family integral membrane protein
1067	 44.54	0	1196485..1197153	+	222	152978755	-	Asuc_1083	-	putative solute/DNA competence effector
1068	 41.43	0	1197255..1199330	+	691	152978756	-	Asuc_1084	-	carboxy-terminal protease
1069	 40.81	-1	1199395..1200879	+	494	152978757	-	Asuc_1085	-	hypothetical protein
1070	 44.56	0	1200994..1201554	+	186	152978758	-	Asuc_1086	-	hypothetical protein
1071	 41.23	0	1201609..1202241	+	210	152978759	-	Asuc_1087	-	beta-lactamase domain-containing protein
1072	 41.21	0	1203093..1204361	+	422	152978760	-	Asuc_1088	-	hypothetical protein
1073	 41.56	0	1204406..1206484	-	692	152978761	-	Asuc_1089	-	excinuclease ABC subunit B
1074	 42.78	0	1207172..1208134	+	320	152978762	-	Asuc_1090	-	CaCA family Na(+)/Ca(+) antiporter
1075	 47.09	0	1208253..1209386	-	377	152978763	-	Asuc_1091	-	chaperone protein DnaJ
1076	 45.34	0	1209632..1211539	-	635	152978764	-	Asuc_1092	-	chaperone protein DnaK
1077	 43.51	0	1211875..1212798	-	307	152978765	-	Asuc_1093	-	hypothetical protein
1078	 47.11	0	1212823..1214550	-	575	152978766	-	Asuc_1094	-	arginyl-tRNA synthetase
1079	 46.80	0	1214657..1215532	-	291	152978767	-	Asuc_1095	-	acyl-CoA thioesterase II
1080	 47.65	0	1215779..1217503	-	574	152978768	-	Asuc_1096	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
1081	 47.53	0	1217609..1219369	-	586	152978769	-	Asuc_1097	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
1082	 45.22	0	1219456..1219800	-	114	152978770	-	Asuc_1098	-	hypothetical protein
1083	 45.00	0	1219956..1220435	+	159	152978771	-	Asuc_1099	-	leucine-responsive transcriptional regulator
1084	 49.89	+1	1220437..1223268	+	943	152978772	-	Asuc_1100	-	cell divisionFtsK/SpoIIIE
1085	 45.14	0	1223326..1223952	+	208	152978773	-	Asuc_1101	-	outer-membrane lipoprotein carrier protein
1086	 50.52	+1	1224019..1225362	+	447	152978774	-	Asuc_1102	-	recombination factor protein RarA
1087	 49.01	0	1225388..1226554	+	388	152978775	-	Asuc_1103	-	N-acetylglucosamine-6-phosphate deacetylase
1088	 46.59	0	1226716..1228005	+	429	152978776	-	Asuc_1104	-	seryl-tRNA synthetase
1089	 45.72	0	1228020..1229036	+	338	152978777	-	Asuc_1105	-	auxin efflux carrier
1090	 47.71	0	1229086..1229892	-	268	152978778	-	Asuc_1106	-	aldose 1-epimerase
1091	 46.16	0	1229978..1231903	+	641	152978779	-	Asuc_1107	-	helicase c2
1092	 51.05	+1	1231908..1232624	+	238	152978780	-	Asuc_1108	-	peptidase M22 glycoprotease
1093	 45.30	0	1232675..1233301	+	208	152978781	-	Asuc_1109	-	Slp family outer membrane lipoprotein
1094	 44.35	0	1233336..1235024	+	562	152978782	-	Asuc_1110	-	long-chain-fatty-acid--CoA ligase
1095	 45.49	0	1235109..1236260	+	383	152978783	-	Asuc_1111	-	ribonuclease D
1096	 40.17	-1	1236253..1236852	+	199	152978784	-	Asuc_1112	-	hypothetical protein
1097	 41.19	0	1236849..1237166	+	105	152978785	-	Asuc_1113	-	hypothetical protein
1098	 50.22	+1	1237190..1237651	+	153	152978786	-	Asuc_1114	-	17 kDa surface antigen
1099	 46.48	0	1237755..1239374	+	539	152978787	-	Asuc_1115	-	4-phytase
1100	 44.72	0	1239478..1240785	+	435	152978788	-	Asuc_1116	-	glutamyl-tRNA reductase
1101	 44.72	0	1240876..1241604	+	242	152978789	-	Asuc_1117	-	dithiobiotin synthetase
1102	 44.57	0	1241641..1242192	-	183	152978790	-	Asuc_1118	-	hypothetical protein
1103	 44.74	0	1242806..1243261	+	151	152978791	-	Asuc_1119	-	hypothetical protein
1104	 48.70	0	1243288..1244823	+	511	152978792	-	Asuc_1120	-	transcription elongation factor NusA
1105	 49.05	0	1244836..1247349	+	837	152978793	-	Asuc_1121	-	translation initiation factor IF-2
1106	 46.41	0	1247472..1247861	+	129	152978794	-	Asuc_1122	-	ribosome-binding factor A
1107	 50.64	+1	1247861..1248796	+	311	152978795	-	Asuc_1123	-	tRNA pseudouridine synthase B
1108	 45.10	0	1248810..1249718	+	302	152978796	-	Asuc_1124	-	hypothetical protein
1109	 51.01	+1	1249751..1251034	-	427	152978797	-	Asuc_1125	-	tRNA(Ile)-lysidine synthetase
1110	 48.90	0	1251192..1252052	-	286	152978798	-	Asuc_1126	-	pyridoxal kinase
1111	 49.69	0	1252153..1253106	-	317	152978799	-	Asuc_1127	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
1112	 45.73	0	1253318..1253938	-	206	152978800	-	Asuc_1128	-	hypothetical protein
1113	 48.42	0	1254249..1255262	+	337	152978801	-	Asuc_1129	-	thiamine ABC transporter, periplasmic binding protein
1114	 49.94	+1	1255262..1256881	+	539	152978802	-	Asuc_1130	-	thiamine transporter membrane protein
1115	 48.42	0	1256874..1257536	+	220	152978803	-	Asuc_1131	-	ABC transporter ATP-binding protein
1116	 50.05	+1	1257539..1258555	+	338	152978804	-	Asuc_1132	-	biotin synthase
45.47	MEAN

4.33	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.