IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.47   STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
842	 70.92	0	902303..903196	+	297	121593278	-	Ajs_0856	-	N-formylglutamate amidohydrolase
843	 73.09	+1	903269..905791	-	840	121593279	-	Ajs_0857	-	MscS mechanosensitive ion channel
844	 72.53	+1	905890..906639	-	249	121593280	-	Ajs_0858	-	glycerophosphodiester phosphodiesterase
845	 67.86	0	906665..907672	-	335	121593281	-	Ajs_0859	-	ABC transporter related
846	 64.31	0	907736..908584	-	282	121593282	-	Ajs_0860	-	binding-protein-dependent transport systems inner membrane component
847	 62.02	0	908587..909468	-	293	121593283	-	Ajs_0861	-	binding-protein-dependent transport systems inner membrane component
848	 63.17	0	909599..910912	-	437	121593284	-	Ajs_0862	-	extracellular solute-binding protein
849	 66.21	0	911149..912453	+	434	121593285	-	Ajs_0863	-	D-3-phosphoglycerate dehydrogenase
850	 67.33	0	912646..916569	+	1307	121593286	-	Ajs_0864	-	FAD linked oxidase domain-containing protein
851	 71.14	0	916566..917057	+	163	121593287	-	Ajs_0865	-	histidine triad (HIT) protein
852	 68.35	0	917221..917637	+	138	121593288	-	Ajs_0866	-	hypothetical protein
853	 63.39	0	917762..918493	+	243	121593289	-	Ajs_0867	-	ubiquinone/menaquinone biosynthesis methyltransferases
854	 70.04	0	918532..919539	+	335	121593290	-	Ajs_0868	-	import inner membrane translocase, subunit Tim44
855	 70.64	0	919620..920198	+	192	121593291	-	Ajs_0869	-	hypothetical protein
856	 64.94	0	920195..921760	+	521	121593292	ubiB	Ajs_0870	-	putative ubiquinone biosynthesis protein UbiB
857	 63.42	0	921799..923247	+	482	121593293	-	Ajs_0871	-	Na+/solute symporter
858	 57.86	-1	923278..923595	+	105	121593294	-	Ajs_0872	-	FmdB family regulatory protein
859	 64.58	0	923611..924234	+	207	121593295	-	Ajs_0873	-	hypothetical protein
860	 64.29	0	924327..926138	+	603	121593296	-	Ajs_0874	-	aspartyl-tRNA synthetase
861	 68.66	0	926235..927038	+	267	121593297	-	Ajs_0875	-	hypothetical protein
862	 66.45	0	927049..927519	+	156	121593298	-	Ajs_0876	-	NUDIX hydrolase
863	 67.19	0	927516..928283	+	255	121593299	-	Ajs_0877	-	endonuclease/exonuclease/phosphatase
864	 72.28	+1	928288..929517	+	409	121593300	-	Ajs_0878	-	phospholipase D/transphosphatidylase
865	 65.56	0	929645..930370	+	241	121593301	-	Ajs_0879	-	GTP cyclohydrolase
866	 65.25	0	930374..930796	+	140	121593302	-	Ajs_0880	-	BLUF domain-containing protein
867	 72.04	+1	931017..931928	+	303	121593303	-	Ajs_0881	-	hypothetical protein
868	 73.87	+1	931990..932808	+	272	121593304	-	Ajs_0882	-	hypothetical protein
869	 72.93	+1	932798..933484	-	228	121593305	-	Ajs_0883	-	hypothetical protein
870	 69.77	0	933560..934171	-	203	121593306	-	Ajs_0884	-	hypothetical protein
871	 71.84	+1	934301..934957	+	218	121593307	-	Ajs_0885	-	lysine exporter protein LysE/YggA
872	 73.86	+1	935024..936427	-	467	121593308	-	Ajs_0886	-	amidase
873	 68.01	0	936531..938021	-	496	121593309	-	Ajs_0887	-	extracellular solute-binding protein
874	 71.10	0	938120..938977	-	285	121593310	-	Ajs_0888	-	ABC transporter related
875	 72.04	+1	938974..939978	-	334	121593311	-	Ajs_0889	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
876	 71.69	+1	939975..940850	-	291	121593312	-	Ajs_0890	-	binding-protein-dependent transport systems inner membrane component
877	 70.03	0	940847..941857	-	336	121593313	-	Ajs_0891	-	binding-protein-dependent transport systems inner membrane component
878	 61.24	-1	941985..942242	+	85	121593314	-	Ajs_0892	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
879	 67.77	0	942306..942941	-	211	121593315	-	Ajs_0893	-	peptidyl-tRNA hydrolase
880	 63.32	0	943076..943702	-	208	121593316	-	Ajs_0894	-	50S ribosomal protein L25P
881	 61.80	0	943856..944821	-	321	121593317	-	Ajs_0895	-	Fis family transcriptional regulator
882	 56.69	-2	944987..945838	-	283	121593318	-	Ajs_0896	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
883	 67.05	0	945848..946363	-	171	121593319	-	Ajs_0897	-	putative lipoprotein
884	 65.61	0	946360..948159	-	599	121593320	-	Ajs_0898	-	TPR repeat-containing protein
885	 69.36	0	948189..949004	+	271	121593321	-	Ajs_0899	-	formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase
886	 66.62	0	949098..951080	+	660	121593322	-	Ajs_0900	-	hypothetical protein
887	 71.14	0	951077..952150	+	357	121593323	-	Ajs_0901	-	A/G-specific DNA-adenine glycosylase
888	 66.78	0	952261..953124	-	287	121593324	-	Ajs_0902	-	hypothetical protein
889	 69.73	0	953128..954792	-	554	121593325	-	Ajs_0903	-	DNA repair protein RecN
890	 66.78	0	954795..955691	-	298	121593326	ppnK	Ajs_0904	-	inorganic polyphosphate/ATP-NAD kinase
891	 62.19	0	955720..956724	+	334	121593327	hrcA	Ajs_0905	-	heat-inducible transcription repressor
892	 63.58	0	957985..958308	+	107	121593328	-	Ajs_0906	-	transposase IS3/IS911 family protein
893	 63.93	0	958305..959219	+	304	121593329	-	Ajs_0907	-	integrase catalytic subunit
894	 56.93	-2	959306..960250	+	314	121593330	-	Ajs_0908	-	hypothetical protein
895	 61.39	-1	960160..961239	-	359	121593331	-	Ajs_0909	-	integrase catalytic subunit
896	 60.42	-1	961319..961702	+	127	121593332	-	Ajs_0910	-	hypothetical protein
897	 66.33	0	961715..962617	-	300	121593333	-	Ajs_0911	-	hypothetical protein
898	 63.46	0	962614..963237	-	207	121593334	-	Ajs_0912	-	hypothetical protein
899	 62.10	0	963938..965164	+	408	121593335	-	Ajs_0914	-	transposase, mutator type
900	 59.20	-1	966008..966529	+	173	121593336	-	Ajs_0916	-	hypothetical protein
901	 63.05	0	966891..967499	+	202	121593337	-	Ajs_0917	-	hypothetical protein
902	 66.50	0	967509..968093	+	194	121593338	-	Ajs_0918	-	isochorismatase hydrolase
903	 64.96	0	968112..968579	+	155	121593339	-	Ajs_0919	-	hypothetical protein
904	 68.17	0	968674..969006	+	110	121593340	-	Ajs_0920	-	hypothetical protein
905	 68.84	0	969087..970331	-	414	121593341	-	Ajs_0921	-	putative oxygen-independent coproporphyrinogen III oxidase
906	 69.58	0	970424..971041	-	205	121593342	-	Ajs_0922	-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
907	 68.84	0	971087..971821	-	244	121593343	-	Ajs_0923	-	ribonuclease PH
908	 67.33	0	971898..972800	-	300	121593344	-	Ajs_0924	-	protein phosphatase 2C domain-containing protein
909	 63.03	0	972797..973813	-	338	121593345	-	Ajs_0925	-	serine/threonine protein kinase
910	 68.21	0	973895..974803	+	302	121593346	-	Ajs_0926	-	hypothetical protein
911	 63.30	0	974991..976268	+	425	121593347	-	Ajs_0927	-	phage integrase family protein
912	 58.86	-1	976265..976981	+	238	121593348	-	Ajs_0928	-	hypothetical protein
913	 61.18	-1	977050..977286	+	78	121593349	-	Ajs_0929	-	phage transcriptional regulator, AlpA
914	 64.87	0	977517..978407	+	296	121593350	-	Ajs_0930	-	hypothetical protein
915	 68.58	0	978404..979816	+	470	121593351	-	Ajs_0931	-	replicative DNA helicase
916	 68.18	0	979806..980600	+	264	121593352	-	Ajs_0932	-	XRE family transcriptional regulator
917	 65.36	0	980597..981748	+	383	121593353	-	Ajs_0933	-	hypothetical protein
918	 63.91	0	981691..982053	-	120	121593354	-	Ajs_0934	-	hypothetical protein
919	 64.29	0	982077..982328	+	83	121593355	-	Ajs_0935	-	hypothetical protein
920	 66.97	0	982405..983070	+	221	121593356	-	Ajs_0936	-	hypothetical protein
921	 61.11	-1	983385..984230	+	281	121593357	-	Ajs_0937	-	hypothetical protein
922	 65.03	0	984227..985144	+	305	121593358	-	Ajs_0938	-	hypothetical protein
923	 66.49	0	985362..985940	+	192	121593359	-	Ajs_0939	-	hypothetical protein
924	 61.26	-1	986652..986984	-	110	121593360	-	Ajs_0940	-	hypothetical protein
925	 60.93	-1	986965..987243	-	92	121593361	-	Ajs_0941	-	hypothetical protein
926	 64.99	0	987240..987596	-	118	121593362	-	Ajs_0942	-	hypothetical protein
927	 61.35	-1	987709..987915	+	68	121593363	-	Ajs_0943	-	hypothetical protein
928	 62.42	0	987930..988235	+	101	121593364	-	Ajs_0944	-	hypothetical protein
929	 61.86	0	988266..988619	+	117	121593365	-	Ajs_0945	-	RelE-like cytotoxic translational repressor of toxin-antitoxin stability system
930	 69.12	0	988616..988900	+	94	121593366	-	Ajs_0946	-	helix-turn-helix domain-containing protein
931	 62.48	0	989060..989680	+	206	121593367	-	Ajs_0947	-	guanylate kinase
932	 63.73	0	989696..989899	+	67	121593368	-	Ajs_0948	-	DNA-directed RNA polymerase subunit omega
933	 61.55	-1	990001..992265	+	754	121593369	-	Ajs_0949	-	(p)ppGpp synthetase I, SpoT/RelA
934	 62.21	0	992279..992839	-	186	121593370	-	Ajs_0950	-	transcription elongation factor GreB
935	 62.64	0	993141..993413	-	90	121593371	-	Ajs_0951	-	hypothetical protein
936	 61.05	-1	993663..993929	+	88	121593372	-	Ajs_0952	-	SSU ribosomal protein S15P
937	 64.33	0	994145..996328	+	727	121593373	-	Ajs_0953	-	polynucleotide phosphorylase/polyadenylase
938	 68.86	0	996428..997432	+	334	121593374	-	Ajs_0954	-	alcohol dehydrogenase
939	 66.67	0	997429..998181	+	250	121593375	-	Ajs_0955	-	triosephosphate isomerase
940	 64.57	0	998220..998600	+	126	121593376	-	Ajs_0956	-	protein translocase subunit secG
941	 56.39	-2	998890..999249	+	119	121593377	-	Ajs_0957	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
66.47	MEAN

4.71	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.