IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
745	 65.86	0	798735..798983	+	82	121593181	-	Ajs_0757	-	BolA family protein
746	 69.70	0	799175..800527	+	450	121593182	-	Ajs_0758	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
747	 65.44	0	800524..801174	+	216	121593183	hisG	Ajs_0759	-	ATP phosphoribosyltransferase catalytic subunit
748	 69.09	0	801339..802658	+	439	121593184	-	Ajs_0760	-	histidinol dehydrogenase
749	 71.94	+1	802824..803525	+	233	121593185	-	Ajs_0761	-	hypothetical protein
750	 69.38	0	803564..804670	+	368	121593186	-	Ajs_0762	-	histidinol-phosphate aminotransferase
751	 66.98	0	804667..805299	+	210	121593187	-	Ajs_0763	-	imidazoleglycerol-phosphate dehydratase
752	 68.01	0	805350..806018	+	222	121593188	-	Ajs_0764	-	imidazole glycerol phosphate synthase subunit hisH
753	 68.21	0	806044..806820	+	258	121593189	-	Ajs_0765	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
754	 68.34	0	806827..808023	-	398	121593190	-	Ajs_0766	-	hypothetical protein
755	 65.94	0	808091..809464	-	457	121593191	-	Ajs_0767	-	putative transmembrane protein
756	 68.95	0	809464..810996	-	510	121593192	-	Ajs_0768	-	glycosyl transferase, group 1
757	 70.76	0	810993..811994	-	333	121593193	-	Ajs_0769	-	putative transmembrane protein
758	 71.54	+1	811987..813381	-	464	121593194	-	Ajs_0770	-	putative transmembrane protein
759	 74.05	+1	813389..813943	-	184	121593195	-	Ajs_0771	-	putative lipoprotein
760	 71.91	+1	813965..817855	-	1296	121593196	-	Ajs_0772	-	TPR repeat-containing protein
761	 69.53	0	817815..820646	-	943	121593197	-	Ajs_0773	-	polysaccharide deacetylase
762	 71.32	+1	820825..821835	+	336	121593198	-	Ajs_0774	-	UDP-galactose 4-epimerase
763	 69.36	0	821876..822655	+	259	121593199	-	Ajs_0775	-	imidazole glycerol phosphate synthase subunit hisF
764	 63.16	0	822760..823158	+	132	121593200	-	Ajs_0776	-	phosphoribosyl-AMP cyclohydrolase
765	 66.92	0	823165..823563	+	132	121593201	-	Ajs_0777	-	phosphoribosyl-ATP pyrophosphatase
766	 64.34	0	823563..823949	+	128	121593202	-	Ajs_0778	-	putative transmembrane protein
767	 69.26	0	823942..824982	+	346	121593203	-	Ajs_0779	-	patatin
768	 63.06	0	825022..825381	+	119	121593204	-	Ajs_0780	-	histidine triad (HIT) protein
769	 61.04	-1	825484..825732	+	82	121593205	-	Ajs_0781	-	twin arginine-targeting protein translocase
770	 66.88	0	825765..826244	+	159	121593206	tatB	Ajs_0782	-	sec-independent translocase
771	 63.88	0	826307..827095	+	262	121593207	-	Ajs_0783	-	Sec-independent protein translocase TatC
772	 68.33	0	827231..828370	-	379	121593208	-	Ajs_0784	-	peptidase S1 and S6, chymotrypsin/Hap
773	 68.45	0	828506..829849	-	447	121593209	-	Ajs_0785	-	ferric reductase domain-containing protein
774	 68.50	0	829990..830754	+	254	121593210	-	Ajs_0786	-	hypothetical protein
775	 70.45	0	830832..831887	+	351	121593211	-	Ajs_0787	-	4-hydroxythreonine-4-phosphate dehydrogenase
776	 61.07	-1	831963..832391	-	142	121593212	-	Ajs_0788	-	large conductance mechanosensitive channel protein
777	 61.50	-1	832526..833125	+	199	121593213	-	Ajs_0789	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
778	 60.41	-1	833141..834562	+	473	121593214	-	Ajs_0790	-	cytochrome b/b6 domain-containing protein
779	 58.60	-1	834579..835334	+	251	121593215	-	Ajs_0791	-	cytochrome c1
780	 55.39	-2	835430..836041	+	203	121593216	-	Ajs_0792	-	glutathione S-transferase domain-containing protein
781	 61.82	0	836065..836601	+	178	121593217	-	Ajs_0793	-	stringent starvation protein B
782	 62.33	0	836844..837143	-	99	121593218	-	Ajs_0794	-	hypothetical protein
783	 65.62	0	837194..838144	+	316	121593219	-	Ajs_0795	-	peptidase M23B
784	 63.54	0	838280..841033	+	917	121593220	-	Ajs_0796	-	preprotein translocase subunit SecA
785	 68.05	0	841134..842363	+	409	121593221	argJ	Ajs_0797	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
786	 65.07	0	842418..843296	+	292	121593222	-	Ajs_0798	-	hypothetical protein
787	 68.23	0	843293..843739	+	148	121593223	-	Ajs_0799	-	NUDIX hydrolase
788	 69.70	0	843808..844038	-	76	121593224	-	Ajs_0800	-	hypothetical protein
789	 64.95	0	844045..844800	-	251	121593225	-	Ajs_0801	-	hypothetical protein
790	 68.59	0	844891..845514	-	207	121593226	-	Ajs_0802	-	dephospho-CoA kinase
791	 65.53	0	845516..846397	-	293	121593227	-	Ajs_0803	-	type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
792	 58.13	-1	846397..847614	-	405	121593228	-	Ajs_0804	-	type II secretion system protein
793	 55.19	-2	847635..849368	-	577	121593229	-	Ajs_0805	-	type IV-A pilus assembly ATPase PilB
794	 63.27	0	849677..850765	-	362	121593230	-	Ajs_0806	-	transposase, IS4 family protein
795	 59.26	-1	851174..852145	+	323	121593231	-	Ajs_0807	-	phage integrase family protein
796	 61.93	0	852387..854816	-	809	121593232	-	Ajs_0808	-	hypothetical protein
797	 59.25	-1	854813..856525	-	570	121593233	-	Ajs_0809	-	hypothetical protein
798	 62.22	0	856530..857519	-	329	121593234	-	Ajs_0810	-	hypothetical protein
799	 61.11	-1	858831..859154	-	107	121593235	-	Ajs_0812	-	hypothetical protein
800	 61.50	-1	859200..859586	-	128	121593236	-	Ajs_0813	-	hypothetical protein
801	 54.58	-2	859583..860401	-	272	121593237	-	Ajs_0814	-	hypothetical protein
802	 47.47	-2	860555..860752	-	65	121593238	-	Ajs_0815	-	hypothetical protein
803	 56.86	-2	860849..861205	+	118	121593239	-	Ajs_0816	-	hypothetical protein
804	 64.58	0	861284..862336	-	350	121593240	-	Ajs_0817	-	silent information regulator protein Sir2
805	 60.61	-1	862937..863497	-	186	121593241	-	Ajs_0819	-	hypothetical protein
806	 60.33	-1	863497..863796	+	99	121593242	-	Ajs_0820	-	hypothetical protein
807	 63.15	0	863779..864744	-	321	121593243	-	Ajs_0821	-	hypothetical protein
808	 61.35	-1	864799..865080	+	93	121593244	-	Ajs_0822	-	hypothetical protein
809	 62.17	0	865077..865787	+	236	121593245	-	Ajs_0823	-	metallophosphoesterase
810	 60.81	-1	865756..866028	+	90	121593246	-	Ajs_0824	-	hypothetical protein
811	 62.15	0	866414..867232	-	272	121593247	-	Ajs_0825	-	hypothetical protein
812	 62.85	0	867344..868051	-	235	121593248	-	Ajs_0826	-	DNA ligase III-like protein
813	 53.60	-2	868057..868584	-	175	121593249	-	Ajs_0827	-	hypothetical protein
814	 57.22	-1	868581..869978	-	465	121593250	-	Ajs_0828	-	hypothetical protein
815	 58.84	-1	870052..871635	-	527	121593251	-	Ajs_0829	-	chromosome segregation ATPase-like protein
816	 64.48	0	871648..872469	-	273	121593252	-	Ajs_0830	-	IstB ATP binding domain-containing protein
817	 66.21	0	872459..873991	-	510	121593253	-	Ajs_0831	-	integrase catalytic subunit
818	 66.14	0	874052..874993	-	313	121593254	-	Ajs_0832	-	DEAD-like helicases-like
819	 61.02	-1	875015..880312	-	1765	121593255	-	Ajs_0833	-	DEAD/DEAH box helicase domain-containing protein
820	 57.73	-1	880327..881367	-	346	121593256	-	Ajs_0834	-	filamentation induced by cAMP protein Fic
821	 64.97	0	881907..882671	-	254	121593257	-	Ajs_0835	-	IstB ATP binding domain-containing protein
822	 65.98	0	882668..884263	-	531	121593258	-	Ajs_0836	-	integrase catalytic subunit
823	 58.76	-1	884366..884896	+	176	121593259	-	Ajs_0837	-	hypothetical protein
824	 58.42	-1	885127..886035	-	302	121593260	-	Ajs_0838	-	plasmid encoded RepA protein
825	 58.11	-1	886444..886782	-	112	121593261	-	Ajs_0839	-	hypothetical protein
826	 67.38	0	887111..888094	-	327	121593262	-	Ajs_0840	-	dimethylallyltranstransferase
827	 58.97	-1	888268..888579	+	103	121593263	-	Ajs_0841	-	50S ribosomal protein L21P
828	 64.73	0	888595..888852	+	85	121593264	rpmA	Ajs_0842	-	50S ribosomal protein L27
829	 67.11	0	888934..890073	+	379	121593265	obgE	Ajs_0843	-	GTPase ObgE
830	 68.42	0	890147..891289	+	380	121593266	-	Ajs_0844	-	gamma-glutamyl kinase
831	 62.61	0	891336..892025	-	229	121593267	-	Ajs_0845	-	NUDIX hydrolase
832	 65.35	0	892116..893861	+	581	121593268	-	Ajs_0846	-	prolyl-tRNA synthetase
833	 68.34	0	893882..894538	+	218	121593269	-	Ajs_0847	-	lytic transglycosylase, catalytic
834	 65.98	0	894625..895941	-	438	121593270	-	Ajs_0848	-	hypothetical protein
835	 62.12	0	896120..896449	-	109	121593271	-	Ajs_0849	-	glutaredoxin-like protein
836	 73.90	+1	896504..897346	-	280	121593272	-	Ajs_0850	-	HemK family modification methylase
837	 68.30	0	897404..898507	-	367	121593273	-	Ajs_0851	-	peptide chain release factor 1
838	 67.96	0	898621..899931	-	436	121593274	-	Ajs_0852	-	glutamyl-tRNA reductase
839	 65.95	0	900006..900284	+	92	121593275	-	Ajs_0853	-	hypothetical protein
840	 73.75	+1	900286..901188	-	300	121593276	-	Ajs_0854	-	LysR family transcriptional regulator
841	 67.80	0	901231..902292	+	353	121593277	-	Ajs_0855	-	hypothetical protein
842	 70.92	0	902303..903196	+	297	121593278	-	Ajs_0856	-	N-formylglutamate amidohydrolase
843	 73.09	+1	903269..905791	-	840	121593279	-	Ajs_0857	-	MscS mechanosensitive ion channel
844	 72.53	+1	905890..906639	-	249	121593280	-	Ajs_0858	-	glycerophosphodiester phosphodiesterase
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.