IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
698	 65.57	0	749729..750367	+	212	121593134	-	Ajs_0710	-	cytochrome c, class I
699	 66.57	0	750536..752689	+	717	121593135	-	Ajs_0711	-	ResB family protein
700	 62.70	0	752686..754020	+	444	121593136	-	Ajs_0712	-	cytochrome c assembly protein
701	 63.56	0	754112..755110	+	332	121593137	-	Ajs_0713	-	putative sulfite oxidase subunit YedY
702	 68.79	0	755110..755769	+	219	121593138	-	Ajs_0714	-	ferric reductase domain-containing protein
703	 63.56	0	755836..756672	-	278	121593139	-	Ajs_0715	-	beta-lactamase domain-containing protein
704	 64.35	0	756737..758032	-	431	121593140	-	Ajs_0716	-	diaminopimelate decarboxylase
705	 65.71	0	758029..758238	-	69	121593141	-	Ajs_0717	-	hypothetical protein
706	 59.26	-1	758289..758882	-	197	121593142	-	Ajs_0718	-	resolvase domain-containing protein
707	 58.77	-1	758978..760180	-	400	121593143	-	Ajs_0719	-	zonular occludens toxin
708	 60.00	-1	760177..760476	-	99	121593144	-	Ajs_0720	-	hypothetical protein
709	 53.72	-2	760473..761777	-	434	121593145	-	Ajs_0721	-	hypothetical protein
710	 57.45	-1	761952..762320	+	122	121593146	-	Ajs_0722	-	hypothetical protein
711	 52.10	-2	762839..763147	-	102	121593147	-	Ajs_0723	-	putative phage associated protein
712	 56.62	-2	763180..764274	-	364	121593148	-	Ajs_0724	-	replication initiation factor
713	 65.96	0	764839..765123	-	94	121593149	-	Ajs_0725	-	hypothetical protein
714	 56.44	-2	765338..765865	-	175	121593150	-	Ajs_0726	-	hypothetical protein
715	 54.08	-2	765868..766161	+	97	121593151	-	Ajs_0727	-	hypothetical protein
716	 58.18	-1	766161..766490	+	109	121593152	-	Ajs_0728	-	frataxin family protein
717	 60.04	-1	766566..768950	-	794	121593153	-	Ajs_0729	-	1A family penicillin-binding protein
718	 58.82	-1	769214..770284	+	356	121593154	-	Ajs_0730	-	type IV pilus assembly protein PilM
719	 48.69	-2	770281..770892	+	203	121593155	-	Ajs_0731	-	fimbrial assembly family protein
720	 48.30	-2	770894..771568	+	224	121593156	-	Ajs_0732	-	pilus assembly protein, PilO
721	 52.17	-2	771565..772116	+	183	121593157	-	Ajs_0733	-	pilus assembly protein, PilQ
722	 52.27	-2	772113..774203	+	696	121593158	-	Ajs_0734	-	type IV pilus secretin PilQ
723	 62.23	0	774275..775378	+	367	121593159	-	Ajs_0735	-	3-dehydroquinate synthase
724	 65.90	0	775436..776608	+	390	121593160	-	Ajs_0736	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
725	 61.70	-1	776682..777245	+	187	121593161	-	Ajs_0737	-	hypothetical protein
726	 64.48	0	777352..778173	-	273	121593162	-	Ajs_0738	-	IstB ATP binding domain-containing protein
727	 66.21	0	778163..779695	-	510	121593163	-	Ajs_0739	-	integrase catalytic subunit
728	 65.89	0	779743..780510	+	255	121593164	-	Ajs_0740	-	hypothetical protein
729	 65.59	0	780692..785425	+	1577	121593165	-	Ajs_0741	-	glutamate synthase (NADH) large subunit
730	 66.46	0	785489..786967	+	492	121593166	gltD	Ajs_0742	-	glutamate synthase subunit beta
731	 63.74	0	787198..788085	+	295	121593167	-	Ajs_0743	-	extracellular solute-binding protein
732	 66.21	0	788263..788916	+	217	121593168	-	Ajs_0744	-	polar amino acid ABC transporter, inner membrane subunit
733	 67.31	0	788897..789679	+	260	121593169	-	Ajs_0745	-	ABC transporter related
734	 70.82	0	789871..790833	-	320	121593170	-	Ajs_0746	-	spermidine synthase
735	 67.40	0	790833..791243	-	136	121593171	-	Ajs_0747	-	S-adenosylmethionine decarboxylase related
736	 68.64	0	791607..792467	+	286	121593172	-	Ajs_0748	-	ABC transporter related
737	 67.31	0	792464..793246	+	260	121593173	-	Ajs_0749	-	hypothetical protein
738	 61.93	0	793281..793766	+	161	121593174	-	Ajs_0750	-	hypothetical protein
739	 66.67	0	793763..794515	+	250	121593175	-	Ajs_0751	-	VacJ family lipoprotein
740	 66.51	0	794694..795341	+	215	121593176	-	Ajs_0752	-	toluene tolerance family protein
741	 70.00	0	795372..795641	+	89	121593177	-	Ajs_0753	-	sulfate transporter/antisigma-factor antagonist STAS
742	 63.27	0	795807..796895	+	362	121593178	-	Ajs_0754	-	transposase, IS4 family protein
743	 67.54	0	797064..797981	+	305	121593179	-	Ajs_0755	-	ABC transporter related
744	 63.49	0	797978..798733	+	251	121593180	-	Ajs_0756	-	ABC-2 type transporter
745	 65.86	0	798735..798983	+	82	121593181	-	Ajs_0757	-	BolA family protein
746	 69.70	0	799175..800527	+	450	121593182	-	Ajs_0758	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
747	 65.44	0	800524..801174	+	216	121593183	hisG	Ajs_0759	-	ATP phosphoribosyltransferase catalytic subunit
748	 69.09	0	801339..802658	+	439	121593184	-	Ajs_0760	-	histidinol dehydrogenase
749	 71.94	+1	802824..803525	+	233	121593185	-	Ajs_0761	-	hypothetical protein
750	 69.38	0	803564..804670	+	368	121593186	-	Ajs_0762	-	histidinol-phosphate aminotransferase
751	 66.98	0	804667..805299	+	210	121593187	-	Ajs_0763	-	imidazoleglycerol-phosphate dehydratase
752	 68.01	0	805350..806018	+	222	121593188	-	Ajs_0764	-	imidazole glycerol phosphate synthase subunit hisH
753	 68.21	0	806044..806820	+	258	121593189	-	Ajs_0765	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
754	 68.34	0	806827..808023	-	398	121593190	-	Ajs_0766	-	hypothetical protein
755	 65.94	0	808091..809464	-	457	121593191	-	Ajs_0767	-	putative transmembrane protein
756	 68.95	0	809464..810996	-	510	121593192	-	Ajs_0768	-	glycosyl transferase, group 1
757	 70.76	0	810993..811994	-	333	121593193	-	Ajs_0769	-	putative transmembrane protein
758	 71.54	+1	811987..813381	-	464	121593194	-	Ajs_0770	-	putative transmembrane protein
759	 74.05	+1	813389..813943	-	184	121593195	-	Ajs_0771	-	putative lipoprotein
760	 71.91	+1	813965..817855	-	1296	121593196	-	Ajs_0772	-	TPR repeat-containing protein
761	 69.53	0	817815..820646	-	943	121593197	-	Ajs_0773	-	polysaccharide deacetylase
762	 71.32	+1	820825..821835	+	336	121593198	-	Ajs_0774	-	UDP-galactose 4-epimerase
763	 69.36	0	821876..822655	+	259	121593199	-	Ajs_0775	-	imidazole glycerol phosphate synthase subunit hisF
764	 63.16	0	822760..823158	+	132	121593200	-	Ajs_0776	-	phosphoribosyl-AMP cyclohydrolase
765	 66.92	0	823165..823563	+	132	121593201	-	Ajs_0777	-	phosphoribosyl-ATP pyrophosphatase
766	 64.34	0	823563..823949	+	128	121593202	-	Ajs_0778	-	putative transmembrane protein
767	 69.26	0	823942..824982	+	346	121593203	-	Ajs_0779	-	patatin
768	 63.06	0	825022..825381	+	119	121593204	-	Ajs_0780	-	histidine triad (HIT) protein
769	 61.04	-1	825484..825732	+	82	121593205	-	Ajs_0781	-	twin arginine-targeting protein translocase
770	 66.88	0	825765..826244	+	159	121593206	tatB	Ajs_0782	-	sec-independent translocase
771	 63.88	0	826307..827095	+	262	121593207	-	Ajs_0783	-	Sec-independent protein translocase TatC
772	 68.33	0	827231..828370	-	379	121593208	-	Ajs_0784	-	peptidase S1 and S6, chymotrypsin/Hap
773	 68.45	0	828506..829849	-	447	121593209	-	Ajs_0785	-	ferric reductase domain-containing protein
774	 68.50	0	829990..830754	+	254	121593210	-	Ajs_0786	-	hypothetical protein
775	 70.45	0	830832..831887	+	351	121593211	-	Ajs_0787	-	4-hydroxythreonine-4-phosphate dehydrogenase
776	 61.07	-1	831963..832391	-	142	121593212	-	Ajs_0788	-	large conductance mechanosensitive channel protein
777	 61.50	-1	832526..833125	+	199	121593213	-	Ajs_0789	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
778	 60.41	-1	833141..834562	+	473	121593214	-	Ajs_0790	-	cytochrome b/b6 domain-containing protein
779	 58.60	-1	834579..835334	+	251	121593215	-	Ajs_0791	-	cytochrome c1
780	 55.39	-2	835430..836041	+	203	121593216	-	Ajs_0792	-	glutathione S-transferase domain-containing protein
781	 61.82	0	836065..836601	+	178	121593217	-	Ajs_0793	-	stringent starvation protein B
782	 62.33	0	836844..837143	-	99	121593218	-	Ajs_0794	-	hypothetical protein
783	 65.62	0	837194..838144	+	316	121593219	-	Ajs_0795	-	peptidase M23B
784	 63.54	0	838280..841033	+	917	121593220	-	Ajs_0796	-	preprotein translocase subunit SecA
785	 68.05	0	841134..842363	+	409	121593221	argJ	Ajs_0797	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
786	 65.07	0	842418..843296	+	292	121593222	-	Ajs_0798	-	hypothetical protein
787	 68.23	0	843293..843739	+	148	121593223	-	Ajs_0799	-	NUDIX hydrolase
788	 69.70	0	843808..844038	-	76	121593224	-	Ajs_0800	-	hypothetical protein
789	 64.95	0	844045..844800	-	251	121593225	-	Ajs_0801	-	hypothetical protein
790	 68.59	0	844891..845514	-	207	121593226	-	Ajs_0802	-	dephospho-CoA kinase
791	 65.53	0	845516..846397	-	293	121593227	-	Ajs_0803	-	type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
792	 58.13	-1	846397..847614	-	405	121593228	-	Ajs_0804	-	type II secretion system protein
793	 55.19	-2	847635..849368	-	577	121593229	-	Ajs_0805	-	type IV-A pilus assembly ATPase PilB
794	 63.27	0	849677..850765	-	362	121593230	-	Ajs_0806	-	transposase, IS4 family protein
795	 59.26	-1	851174..852145	+	323	121593231	-	Ajs_0807	-	phage integrase family protein
796	 61.93	0	852387..854816	-	809	121593232	-	Ajs_0808	-	hypothetical protein
797	 59.25	-1	854813..856525	-	570	121593233	-	Ajs_0809	-	hypothetical protein
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.