IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
616	 60.61	-1	658680..659108	+	142	121593052	rplM	Ajs_0625	-	50S ribosomal protein L13
617	 59.80	-1	659119..659511	+	130	121593053	-	Ajs_0626	-	ribosomal protein S9
618	 61.90	0	660423..660821	+	132	121593054	-	Ajs_0628	-	hypothetical protein
619	 57.87	-1	660882..661256	+	124	121593055	-	Ajs_0629	-	iron-sulfur cluster insertion protein ErpA
620	 68.81	0	661319..662440	-	373	121593056	anmK	Ajs_0630	-	anhydro-N-acetylmuramic acid kinase
621	 68.13	0	662453..663817	-	454	121593057	-	Ajs_0631	-	peptidase M23B
622	 64.48	0	664011..665243	+	410	121593058	-	Ajs_0632	-	tyrosyl-tRNA synthetase
623	 62.45	0	665314..665835	-	173	121593059	-	Ajs_0633	-	hemerythrin-like metal-binding protein
624	 70.52	0	665988..666998	-	336	121593060	-	Ajs_0634	-	LysR family transcriptional regulator
625	 70.02	0	667145..667591	+	148	121593061	-	Ajs_0635	-	hypothetical protein
626	 69.67	0	667783..669213	+	476	121593062	-	Ajs_0636	-	glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase
627	 71.85	+1	669218..669988	+	256	121593063	-	Ajs_0637	-	histidine kinase
628	 69.88	0	670023..670364	-	113	121593064	-	Ajs_0638	-	MerR family transcriptional regulator
629	 71.59	+1	670367..671362	-	331	121593065	-	Ajs_0639	-	heat shock protein DnaJ domain-containing protein
630	 65.65	0	671488..671979	-	163	121593066	-	Ajs_0640	-	AsnC family transcriptional regulator
631	 68.13	0	672116..674026	+	636	121593067	-	Ajs_0641	-	D-fructose-6-phosphate amidotransferase
632	 64.15	0	674181..674816	-	211	121593068	-	Ajs_0642	-	NmrA family protein
633	 63.68	0	674932..675834	+	300	121593069	-	Ajs_0643	-	LysR family transcriptional regulator
634	 65.44	0	676689..677750	+	353	121593070	-	Ajs_0645	-	alcohol dehydrogenase
635	 61.48	-1	677747..678016	-	89	121593071	-	Ajs_0646	-	translation initiation factor IF-1
636	 65.41	0	678520..681933	+	1137	121593072	-	Ajs_0647	-	multi-sensor hybrid histidine kinase
637	 63.79	0	681977..682810	+	277	121593073	-	Ajs_0648	-	MCP methyltransferase, CheR-type
638	 69.17	0	682807..683406	+	199	121593074	-	Ajs_0649	-	CheB methylesterase
639	 68.15	0	683403..684551	+	382	121593075	-	Ajs_0650	-	response regulator receiver sensor signal transduction histidine kinase
640	 67.63	0	684604..685020	-	138	121593076	-	Ajs_0651	-	response regulator receiver protein
641	 71.19	+1	685135..685797	-	220	121593077	-	Ajs_0652	-	DNA-N1-methyladenine dioxygenase
642	 70.86	0	685981..687555	+	524	121593078	-	Ajs_0653	-	AMP-dependent synthetase and ligase
643	 67.12	0	687627..688289	+	220	121593079	-	Ajs_0654	-	DSBA oxidoreductase
644	 69.82	0	688358..688864	-	168	121593080	-	Ajs_0655	-	CreA family protein
645	 70.96	0	688861..691446	-	861	121593081	-	Ajs_0656	-	cyanophycin synthetase
646	 68.77	0	691541..693724	-	727	121593082	-	Ajs_0657	-	cyanophycin synthetase
647	 67.78	0	694036..696288	+	750	121593083	-	Ajs_0658	-	ABC transporter related
648	 68.05	0	696305..696811	+	168	121593084	-	Ajs_0659	-	hypothetical protein
649	 66.21	0	697007..697447	+	146	121593085	-	Ajs_0660	-	hypothetical protein
650	 69.84	0	697548..697925	-	125	121593086	-	Ajs_0661	-	signal transduction protein
651	 69.75	0	697957..698898	-	313	121593087	-	Ajs_0662	-	5-nucleotidase
652	 72.03	+1	698895..700124	-	409	121593088	-	Ajs_0663	-	general secretion pathway protein F
653	 72.29	+1	700186..701217	-	343	121593089	-	Ajs_0664	-	luciferase family protein
654	 67.81	0	701414..701938	+	174	121593090	-	Ajs_0665	-	hypothetical protein
655	 69.26	0	702069..703457	-	462	121593091	-	Ajs_0666	-	general secretory pathway protein E
656	 68.93	0	703470..705815	-	781	121593092	-	Ajs_0667	-	general secretion pathway protein D
657	 75.65	+1	705820..706632	-	270	121593093	-	Ajs_0668	-	putative general secretory pathway N transmembrane protein
658	 76.56	+2	706649..707194	-	181	121593094	-	Ajs_0669	-	hypothetical protein
659	 75.37	+1	707191..708420	-	409	121593095	-	Ajs_0670	-	general secretion pathway L
660	 71.29	+1	708480..709625	-	381	121593096	-	Ajs_0671	-	general secretion pathway protein K
661	 73.83	+1	709622..710305	-	227	121593097	-	Ajs_0672	-	hypothetical protein
662	 72.52	+1	710475..710867	-	130	121593098	-	Ajs_0673	-	general secretion pathway protein I
663	 72.86	+1	710864..711412	-	182	121593099	-	Ajs_0674	-	general secretion pathway protein H
664	 69.17	0	711446..711925	-	159	121593100	-	Ajs_0675	-	general secretion pathway protein G
665	 76.22	+2	711949..712398	+	149	121593101	-	Ajs_0676	-	hypothetical protein
666	 72.55	+1	712455..713066	-	203	121593102	-	Ajs_0677	-	phosphoglycerate mutase
667	 71.09	0	713063..713875	-	270	121593103	-	Ajs_0678	-	cobalamin-5'-phosphate synthase
668	 67.05	0	713942..715504	-	520	121593104	-	Ajs_0679	-	threonine dehydratase
669	 68.00	0	715828..716277	+	149	121593105	-	Ajs_0680	-	OsmC family protein
670	 68.77	0	716294..716911	-	205	121593106	-	Ajs_0681	-	putative ubiquinone biosynthesis protein
671	 56.47	-2	717222..718310	+	362	121593107	-	Ajs_0682	-	porin
672	 59.64	-1	718543..719667	+	374	121593108	-	Ajs_0683	-	porin
673	 62.93	0	721449..723029	+	526	121593109	-	Ajs_0685	-	extracellular solute-binding protein
674	 65.24	0	723177..724160	+	327	121593110	-	Ajs_0686	-	binding-protein-dependent transport systems inner membrane component
675	 69.11	0	724162..725388	+	408	121593111	-	Ajs_0687	-	amidohydrolase
676	 68.58	0	725429..727000	+	523	121593112	-	Ajs_0688	-	extracellular solute-binding protein
677	 67.87	0	727047..727958	+	303	121593113	-	Ajs_0689	-	binding-protein-dependent transport systems inner membrane component
678	 69.42	0	728108..729124	+	338	121593114	-	Ajs_0690	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
679	 68.60	0	729121..730155	+	344	121593115	-	Ajs_0691	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
680	 67.55	0	730333..732246	+	637	121593116	-	Ajs_0692	-	5'-nucleotidase
681	 69.90	0	732325..732819	+	164	121593117	-	Ajs_0693	-	PBP family phospholipid-binding protein
682	 68.44	0	733087..733932	-	281	121593118	-	Ajs_0694	-	RpiR family transcriptional regulator
683	 69.04	0	733926..735401	-	491	121593119	-	Ajs_0695	-	glucose-6-phosphate 1-dehydrogenase
684	 65.51	0	735597..736547	+	316	121593120	-	Ajs_0696	-	transaldolase B
685	 66.54	0	736544..738160	+	538	121593121	-	Ajs_0697	-	glucose-6-phosphate isomerase
686	 69.07	0	738191..739357	-	388	121593122	-	Ajs_0698	-	diguanylate cyclase
687	 64.53	0	739628..741268	-	546	121593123	groEL	Ajs_0699	-	chaperonin GroEL
688	 59.45	-1	741359..741649	-	96	121593124	-	Ajs_0700	-	chaperonin Cpn10
689	 69.47	0	741860..742894	-	344	121593125	-	Ajs_0701	-	cytidyltransferase-like protein
690	 68.78	0	742950..743846	-	298	121593126	-	Ajs_0702	-	hypothetical protein
691	 63.44	0	743874..744059	-	61	121593127	-	Ajs_0703	-	hypothetical protein
692	 68.00	0	744190..744264	-	24	121593128	-	Ajs_0704	-	hypothetical protein
693	 66.50	0	744840..746021	-	393	121593129	-	Ajs_0705	-	S-adenosylmethionine synthetase
694	 70.89	0	746154..747029	+	291	121593130	-	Ajs_0706	-	lipid A biosynthesis acyltransferase
695	 68.96	0	747026..747898	+	290	121593131	-	Ajs_0707	-	lipid A biosynthesis acyltransferase
696	 70.54	0	747944..748873	-	309	121593132	-	Ajs_0708	-	alpha/beta hydrolase fold
697	 65.78	0	748922..749710	-	262	121593133	-	Ajs_0709	-	GTP-binding protein, HSR1-related
698	 65.57	0	749729..750367	+	212	121593134	-	Ajs_0710	-	cytochrome c, class I
699	 66.57	0	750536..752689	+	717	121593135	-	Ajs_0711	-	ResB family protein
700	 62.70	0	752686..754020	+	444	121593136	-	Ajs_0712	-	cytochrome c assembly protein
701	 63.56	0	754112..755110	+	332	121593137	-	Ajs_0713	-	putative sulfite oxidase subunit YedY
702	 68.79	0	755110..755769	+	219	121593138	-	Ajs_0714	-	ferric reductase domain-containing protein
703	 63.56	0	755836..756672	-	278	121593139	-	Ajs_0715	-	beta-lactamase domain-containing protein
704	 64.35	0	756737..758032	-	431	121593140	-	Ajs_0716	-	diaminopimelate decarboxylase
705	 65.71	0	758029..758238	-	69	121593141	-	Ajs_0717	-	hypothetical protein
706	 59.26	-1	758289..758882	-	197	121593142	-	Ajs_0718	-	resolvase domain-containing protein
707	 58.77	-1	758978..760180	-	400	121593143	-	Ajs_0719	-	zonular occludens toxin
708	 60.00	-1	760177..760476	-	99	121593144	-	Ajs_0720	-	hypothetical protein
709	 53.72	-2	760473..761777	-	434	121593145	-	Ajs_0721	-	hypothetical protein
710	 57.45	-1	761952..762320	+	122	121593146	-	Ajs_0722	-	hypothetical protein
711	 52.10	-2	762839..763147	-	102	121593147	-	Ajs_0723	-	putative phage associated protein
712	 56.62	-2	763180..764274	-	364	121593148	-	Ajs_0724	-	replication initiation factor
713	 65.96	0	764839..765123	-	94	121593149	-	Ajs_0725	-	hypothetical protein
714	 56.44	-2	765338..765865	-	175	121593150	-	Ajs_0726	-	hypothetical protein
715	 54.08	-2	765868..766161	+	97	121593151	-	Ajs_0727	-	hypothetical protein
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.