IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
580	 68.37	0	621110..621754	+	214	121593016	slmA	Ajs_0589	-	nucleoid occlusion protein
581	 57.70	-1	622021..623001	-	326	121593017	-	Ajs_0590	-	transposase, IS4 family protein
582	 66.22	0	623150..623815	+	221	121593018	-	Ajs_0591	-	TetR family transcriptional regulator
583	 65.72	0	623880..625676	+	598	121593019	-	Ajs_0592	-	acyl-CoA dehydrogenase domain-containing protein
584	 65.29	0	625729..626163	+	144	121593020	-	Ajs_0593	-	hypothetical protein
585	 67.29	0	626264..628666	+	800	121593021	-	Ajs_0594	-	3-hydroxyacyl-CoA dehydrogenase
586	 70.18	0	628688..629884	+	398	121593022	-	Ajs_0595	-	acetyl-CoA acetyltransferase
587	 72.69	+1	629965..630861	+	298	121593023	-	Ajs_0596	-	putative hydrolase
588	 70.23	0	630887..631729	+	280	121593024	-	Ajs_0597	-	hypothetical protein
589	 68.21	0	631747..632523	+	258	121593025	-	Ajs_0598	-	enoyl-CoA hydratase
590	 67.70	0	632703..633185	+	160	121593026	-	Ajs_0599	-	hypothetical protein
591	 67.03	0	633373..633927	+	184	121593027	-	Ajs_0600	-	hypothetical protein
592	 65.74	0	633980..634411	-	143	121593028	-	Ajs_0601	-	thioesterase superfamily protein
593	 67.11	0	634454..636265	+	603	121593029	-	Ajs_0602	-	ABC transporter related
594	 68.25	0	636320..636634	+	104	121593030	-	Ajs_0603	-	MazG nucleotide pyrophosphohydrolase
595	 64.83	0	636748..637779	-	343	121593031	-	Ajs_0604	-	TRAP dicarboxylate transporter, DctP subunit
596	 67.82	0	637813..639111	-	432	121593032	-	Ajs_0605	-	TRAP dicarboxylate transporter, DctM subunit
597	 67.01	0	639108..639698	-	196	121593033	-	Ajs_0606	-	tripartite ATP-independent periplasmic transporter DctQ
598	 67.31	0	639927..640865	+	312	121593034	-	Ajs_0607	-	LysR family transcriptional regulator
599	 63.75	0	641047..641937	+	296	121593035	-	Ajs_0608	-	extracellular solute-binding protein
600	 60.78	-1	642060..642959	+	299	121593036	-	Ajs_0609	-	extracellular solute-binding protein
601	 62.68	0	643080..643832	+	250	121593037	-	Ajs_0610	-	polar amino acid ABC transporter, inner membrane subunit
602	 62.35	0	643834..644505	+	223	121593038	-	Ajs_0611	-	polar amino acid ABC transporter, inner membrane subunit
603	 63.55	0	644528..645265	+	245	121593039	-	Ajs_0612	-	ABC transporter related
604	 70.11	0	645541..646527	-	328	121593040	-	Ajs_0613	-	ornithine cyclodeaminase
605	 69.44	0	646706..647137	+	143	121593041	-	Ajs_0614	-	AsnC family transcriptional regulator
606	 65.45	0	647163..647819	-	218	121593042	-	Ajs_0615	-	cytochrome c, class I
607	 65.35	0	647916..648752	-	278	121593043	-	Ajs_0616	-	HAD family hydrolase
608	 65.31	0	648770..650395	-	541	121593044	prfC	Ajs_0617	-	peptide chain release factor 3
609	 64.99	0	650682..652112	+	476	121593045	-	Ajs_0618	-	S-adenosyl-L-homocysteine hydrolase
610	 68.27	0	652225..653223	+	332	121593046	-	Ajs_0619	-	ribosomal RNA methyltransferase RrmJ/FtsJ
611	 68.57	0	653220..654059	+	279	121593047	-	Ajs_0620	-	5,10-methylenetetrahydrofolate reductase
612	 67.40	0	654070..654753	+	227	121593048	-	Ajs_0621	-	hypothetical protein
613	 71.40	+1	654962..655489	+	175	121593049	-	Ajs_0622	-	rare lipoprotein A
614	 66.89	0	655534..656424	-	296	121593050	-	Ajs_0623	-	hypothetical protein
615	 68.13	0	656544..658526	+	660	121593051	-	Ajs_0624	-	protein kinase
616	 60.61	-1	658680..659108	+	142	121593052	rplM	Ajs_0625	-	50S ribosomal protein L13
617	 59.80	-1	659119..659511	+	130	121593053	-	Ajs_0626	-	ribosomal protein S9
618	 61.90	0	660423..660821	+	132	121593054	-	Ajs_0628	-	hypothetical protein
619	 57.87	-1	660882..661256	+	124	121593055	-	Ajs_0629	-	iron-sulfur cluster insertion protein ErpA
620	 68.81	0	661319..662440	-	373	121593056	anmK	Ajs_0630	-	anhydro-N-acetylmuramic acid kinase
621	 68.13	0	662453..663817	-	454	121593057	-	Ajs_0631	-	peptidase M23B
622	 64.48	0	664011..665243	+	410	121593058	-	Ajs_0632	-	tyrosyl-tRNA synthetase
623	 62.45	0	665314..665835	-	173	121593059	-	Ajs_0633	-	hemerythrin-like metal-binding protein
624	 70.52	0	665988..666998	-	336	121593060	-	Ajs_0634	-	LysR family transcriptional regulator
625	 70.02	0	667145..667591	+	148	121593061	-	Ajs_0635	-	hypothetical protein
626	 69.67	0	667783..669213	+	476	121593062	-	Ajs_0636	-	glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase
627	 71.85	+1	669218..669988	+	256	121593063	-	Ajs_0637	-	histidine kinase
628	 69.88	0	670023..670364	-	113	121593064	-	Ajs_0638	-	MerR family transcriptional regulator
629	 71.59	+1	670367..671362	-	331	121593065	-	Ajs_0639	-	heat shock protein DnaJ domain-containing protein
630	 65.65	0	671488..671979	-	163	121593066	-	Ajs_0640	-	AsnC family transcriptional regulator
631	 68.13	0	672116..674026	+	636	121593067	-	Ajs_0641	-	D-fructose-6-phosphate amidotransferase
632	 64.15	0	674181..674816	-	211	121593068	-	Ajs_0642	-	NmrA family protein
633	 63.68	0	674932..675834	+	300	121593069	-	Ajs_0643	-	LysR family transcriptional regulator
634	 65.44	0	676689..677750	+	353	121593070	-	Ajs_0645	-	alcohol dehydrogenase
635	 61.48	-1	677747..678016	-	89	121593071	-	Ajs_0646	-	translation initiation factor IF-1
636	 65.41	0	678520..681933	+	1137	121593072	-	Ajs_0647	-	multi-sensor hybrid histidine kinase
637	 63.79	0	681977..682810	+	277	121593073	-	Ajs_0648	-	MCP methyltransferase, CheR-type
638	 69.17	0	682807..683406	+	199	121593074	-	Ajs_0649	-	CheB methylesterase
639	 68.15	0	683403..684551	+	382	121593075	-	Ajs_0650	-	response regulator receiver sensor signal transduction histidine kinase
640	 67.63	0	684604..685020	-	138	121593076	-	Ajs_0651	-	response regulator receiver protein
641	 71.19	+1	685135..685797	-	220	121593077	-	Ajs_0652	-	DNA-N1-methyladenine dioxygenase
642	 70.86	0	685981..687555	+	524	121593078	-	Ajs_0653	-	AMP-dependent synthetase and ligase
643	 67.12	0	687627..688289	+	220	121593079	-	Ajs_0654	-	DSBA oxidoreductase
644	 69.82	0	688358..688864	-	168	121593080	-	Ajs_0655	-	CreA family protein
645	 70.96	0	688861..691446	-	861	121593081	-	Ajs_0656	-	cyanophycin synthetase
646	 68.77	0	691541..693724	-	727	121593082	-	Ajs_0657	-	cyanophycin synthetase
647	 67.78	0	694036..696288	+	750	121593083	-	Ajs_0658	-	ABC transporter related
648	 68.05	0	696305..696811	+	168	121593084	-	Ajs_0659	-	hypothetical protein
649	 66.21	0	697007..697447	+	146	121593085	-	Ajs_0660	-	hypothetical protein
650	 69.84	0	697548..697925	-	125	121593086	-	Ajs_0661	-	signal transduction protein
651	 69.75	0	697957..698898	-	313	121593087	-	Ajs_0662	-	5-nucleotidase
652	 72.03	+1	698895..700124	-	409	121593088	-	Ajs_0663	-	general secretion pathway protein F
653	 72.29	+1	700186..701217	-	343	121593089	-	Ajs_0664	-	luciferase family protein
654	 67.81	0	701414..701938	+	174	121593090	-	Ajs_0665	-	hypothetical protein
655	 69.26	0	702069..703457	-	462	121593091	-	Ajs_0666	-	general secretory pathway protein E
656	 68.93	0	703470..705815	-	781	121593092	-	Ajs_0667	-	general secretion pathway protein D
657	 75.65	+1	705820..706632	-	270	121593093	-	Ajs_0668	-	putative general secretory pathway N transmembrane protein
658	 76.56	+2	706649..707194	-	181	121593094	-	Ajs_0669	-	hypothetical protein
659	 75.37	+1	707191..708420	-	409	121593095	-	Ajs_0670	-	general secretion pathway L
660	 71.29	+1	708480..709625	-	381	121593096	-	Ajs_0671	-	general secretion pathway protein K
661	 73.83	+1	709622..710305	-	227	121593097	-	Ajs_0672	-	hypothetical protein
662	 72.52	+1	710475..710867	-	130	121593098	-	Ajs_0673	-	general secretion pathway protein I
663	 72.86	+1	710864..711412	-	182	121593099	-	Ajs_0674	-	general secretion pathway protein H
664	 69.17	0	711446..711925	-	159	121593100	-	Ajs_0675	-	general secretion pathway protein G
665	 76.22	+2	711949..712398	+	149	121593101	-	Ajs_0676	-	hypothetical protein
666	 72.55	+1	712455..713066	-	203	121593102	-	Ajs_0677	-	phosphoglycerate mutase
667	 71.09	0	713063..713875	-	270	121593103	-	Ajs_0678	-	cobalamin-5'-phosphate synthase
668	 67.05	0	713942..715504	-	520	121593104	-	Ajs_0679	-	threonine dehydratase
669	 68.00	0	715828..716277	+	149	121593105	-	Ajs_0680	-	OsmC family protein
670	 68.77	0	716294..716911	-	205	121593106	-	Ajs_0681	-	putative ubiquinone biosynthesis protein
671	 56.47	-2	717222..718310	+	362	121593107	-	Ajs_0682	-	porin
672	 59.64	-1	718543..719667	+	374	121593108	-	Ajs_0683	-	porin
673	 62.93	0	721449..723029	+	526	121593109	-	Ajs_0685	-	extracellular solute-binding protein
674	 65.24	0	723177..724160	+	327	121593110	-	Ajs_0686	-	binding-protein-dependent transport systems inner membrane component
675	 69.11	0	724162..725388	+	408	121593111	-	Ajs_0687	-	amidohydrolase
676	 68.58	0	725429..727000	+	523	121593112	-	Ajs_0688	-	extracellular solute-binding protein
677	 67.87	0	727047..727958	+	303	121593113	-	Ajs_0689	-	binding-protein-dependent transport systems inner membrane component
678	 69.42	0	728108..729124	+	338	121593114	-	Ajs_0690	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
679	 68.60	0	729121..730155	+	344	121593115	-	Ajs_0691	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.