IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
469	 73.04	+1	488791..489873	+	360	121592905	-	Ajs_0474	-	RNA-binding S4 domain-containing protein
470	 64.87	0	490220..492172	+	650	121592906	-	Ajs_0475	-	heat shock protein 90
471	 66.36	0	492376..493368	+	330	121592907	-	Ajs_0476	-	hypothetical protein
472	 63.33	0	493585..494184	+	199	121592908	-	Ajs_0477	-	hypothetical protein
473	 69.93	0	494329..494880	+	183	121592909	-	Ajs_0478	-	hypothetical protein
474	 68.49	0	494887..495927	-	346	121592910	-	Ajs_0479	-	serine/threonine protein kinase
475	 69.65	0	495963..497402	-	479	121592911	-	Ajs_0480	-	serine/threonine protein kinase
476	 73.25	+1	497446..498204	-	252	121592912	-	Ajs_0481	-	metallophosphoesterase
477	 69.30	0	498335..498751	-	138	121592913	-	Ajs_0482	-	OsmC family protein
478	 68.42	0	498813..499268	-	151	121592914	-	Ajs_0483	-	MarR family transcriptional regulator
479	 67.01	0	504022..504597	-	191	121592915	-	Ajs_0484	-	CRISPR-associated Csy4 family protein
480	 63.35	0	504611..505636	-	341	121592916	-	Ajs_0485	-	CRISPR-associated Csy3 family protein
481	 66.76	0	505693..506775	-	360	121592917	-	Ajs_0486	-	CRISPR-associated Csy2 family protein
482	 59.82	-1	506772..508217	-	481	121592918	-	Ajs_0487	-	CRISPR-associated Csy1 family protein
483	 66.50	0	508222..511758	-	1178	121592919	-	Ajs_0488	-	CRISPR-associated helicase Cas3 family protein
484	 61.29	-1	511755..512759	-	334	121592920	-	Ajs_0489	-	CRISPR-associated Cas1 family protein
485	 71.07	0	512795..513976	-	393	121592921	-	Ajs_0490	-	alanine racemase domain-containing protein
486	 70.23	0	513960..514604	-	214	121592922	-	Ajs_0491	-	phosphoglycerate mutase
487	 67.10	0	514627..515091	-	154	121592923	-	Ajs_0492	-	hypothetical protein
488	 70.60	0	515118..515753	-	211	121592924	-	Ajs_0493	-	hypothetical protein
489	 64.36	0	515798..516751	-	317	121592925	-	Ajs_0494	-	PP-loop domain-containing protein
490	 63.71	0	516756..517127	-	123	121592926	-	Ajs_0495	-	dihydroneopterin aldolase
491	 69.34	0	517145..517930	-	261	121592927	-	Ajs_0496	-	short-chain dehydrogenase/reductase SDR
492	 70.21	0	517949..519049	+	366	121592928	-	Ajs_0497	-	hypothetical protein
493	 65.64	0	519517..519711	+	64	121592929	-	Ajs_0499	-	hypothetical protein
494	 72.90	+1	519808..520818	+	336	121592930	-	Ajs_0500	-	glucokinase
495	 69.42	0	520894..522312	-	472	121592931	-	Ajs_0501	-	alpha,alpha-trehalose-phosphate synthase (UDP-forming)
496	 67.82	0	522329..524149	-	606	121592932	-	Ajs_0502	-	glycoside hydrolase 15-related
497	 71.58	+1	524146..524877	-	243	121592933	-	Ajs_0503	-	HAD family hydrolase
498	 71.46	+1	525004..525441	+	145	121592934	-	Ajs_0504	-	thioredoxin
499	 69.95	0	525586..526863	-	425	121592935	-	Ajs_0505	-	metal dependent phosphohydrolase
500	 70.05	0	527175..527942	-	255	121592936	-	Ajs_0506	-	metallophosphoesterase
501	 67.69	0	527960..528646	-	228	121592937	-	Ajs_0507	-	glutathione S-transferase domain-containing protein
502	 67.71	0	528776..529348	-	190	121592938	-	Ajs_0508	-	5-formyltetrahydrofolate cyclo-ligase
503	 70.16	0	529372..531345	+	657	121592939	-	Ajs_0509	-	lytic transglycosylase, catalytic
504	 73.47	+1	531421..531993	-	190	121592940	-	Ajs_0510	-	cytochrome B561
505	 64.81	0	531974..532243	-	89	121592941	-	Ajs_0511	-	putative signal peptide protein
506	 70.07	0	532302..533006	-	234	121592942	-	Ajs_0512	-	putative hydroxylase
507	 73.86	+1	532979..534076	-	365	121592943	-	Ajs_0513	-	(S)-2-hydroxy-acid oxidase
508	 67.49	0	534129..536435	-	768	121592944	-	Ajs_0514	-	TonB-dependent receptor
509	 70.77	0	536686..537612	-	308	121592945	-	Ajs_0515	-	beta-lactamase domain-containing protein
510	 67.44	0	537647..539332	-	561	121592946	-	Ajs_0516	-	AMP-dependent synthetase and ligase
511	 72.26	+1	539473..540384	+	303	121592947	-	Ajs_0517	-	PGAP1 family protein
512	 67.26	0	540403..541242	-	279	121592948	phhA	Ajs_0518	-	phenylalanine 4-monooxygenase
513	 66.05	0	541328..542296	-	322	121592949	-	Ajs_0519	-	hypothetical protein
514	 66.04	0	542387..543505	-	372	121592950	-	Ajs_0520	-	4-hydroxyphenylpyruvate dioxygenase
515	 67.49	0	543691..544176	+	161	121592951	-	Ajs_0521	-	AsnC family transcriptional regulator
516	 68.14	0	544408..545085	+	225	121592952	-	Ajs_0522	-	GCN5-related N-acetyltransferase
517	 68.40	0	545137..546057	+	306	121592953	-	Ajs_0523	-	CBS domain-containing protein
518	 70.86	0	546057..547655	+	532	121592954	-	Ajs_0524	-	apolipoprotein N-acyltransferase
519	 65.33	0	547836..548360	+	174	121592955	-	Ajs_0525	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
520	 68.14	0	548357..549580	+	407	121592956	-	Ajs_0526	-	beta-ketoacyl synthase
521	 64.47	0	549687..550640	+	317	121592957	glyQ	Ajs_0527	-	glycyl-tRNA synthetase subunit alpha
522	 67.64	0	550671..552833	+	720	121592958	-	Ajs_0528	-	glycine--tRNA ligase
523	 72.05	+1	552918..553493	+	191	121592959	-	Ajs_0529	-	D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase
524	 69.20	0	553571..554320	+	249	121592960	-	Ajs_0530	-	phospholipid/glycerol acyltransferase
525	 73.83	+1	554322..555242	+	306	121592961	-	Ajs_0531	-	hypothetical protein
526	 74.17	+1	555242..555721	+	159	121592962	-	Ajs_0532	-	rhodanese domain-containing protein
527	 63.39	0	555815..556303	-	162	121592963	-	Ajs_0533	-	peptidoglycan-binding LysM
528	 70.79	0	556460..557236	+	258	121592964	-	Ajs_0534	-	pantothenate kinase
529	 66.67	0	557267..557920	-	217	121592965	-	Ajs_0535	-	TetR family transcriptional regulator
530	 70.89	0	558013..558486	-	157	121592966	-	Ajs_0536	-	poly(hydroxyalkanoate) granule-associated protein
531	 64.50	0	558675..559736	+	353	121592967	-	Ajs_0537	-	dTDP-glucose 4,6-dehydratase
532	 70.19	0	559733..560611	+	292	121592968	-	Ajs_0538	-	dTDP-4-dehydrorhamnose reductase
533	 63.39	0	560620..561504	+	294	121592969	-	Ajs_0539	-	glucose-1-phosphate thymidylyltransferase
534	 57.74	-1	561512..562060	+	182	121592970	-	Ajs_0540	-	dTDP-4-dehydrorhamnose 3,5-epimerase
535	 58.47	-1	562152..563054	+	300	121592971	-	Ajs_0541	-	rhamnosyltransferase
536	 64.09	0	563100..566051	+	983	121592972	-	Ajs_0542	-	glycosyl transferase family protein
537	 64.97	0	566136..567431	+	431	121592973	-	Ajs_0543	-	hypothetical protein
538	 64.18	0	567445..568287	+	280	121592974	-	Ajs_0544	-	ABC-2 type transporter
539	 66.67	0	568277..570727	+	816	121592975	-	Ajs_0545	-	ABC transporter related
540	 71.27	+1	570724..571374	+	216	121592976	-	Ajs_0546	-	hypothetical protein
541	 63.22	0	571414..572862	+	482	121592977	-	Ajs_0547	-	membrane protein-like protein
542	 61.39	-1	572939..574018	+	359	121592978	-	Ajs_0548	-	integrase catalytic subunit
543	 63.04	0	574053..575018	+	321	121592979	-	Ajs_0549	-	glycosyl transferase family protein
544	 67.97	0	575015..575398	+	127	121592980	-	Ajs_0550	-	GtrA family protein
545	 66.32	0	575681..576832	+	383	121592981	-	Ajs_0551	-	DegT/DnrJ/EryC1/StrS aminotransferase
546	 68.04	0	577232..579193	+	653	121592982	-	Ajs_0552	-	TonB-dependent receptor, plug
547	 71.85	+1	579205..580149	+	314	121592983	-	Ajs_0553	-	hypothetical protein
548	 72.83	+1	580146..582173	+	675	121592984	-	Ajs_0554	-	integral membrane sensor hybrid histidine kinase
549	 68.53	0	582184..582882	+	232	121592985	-	Ajs_0555	-	two component LuxR family transcriptional regulator
550	 72.57	+1	582919..583968	+	349	121592986	-	Ajs_0556	-	glycosyl transferase family protein
551	 68.18	0	583986..585107	+	373	121592987	-	Ajs_0557	-	acyltransferase 3
552	 59.03	-1	585393..591035	+	1880	121592988	-	Ajs_0558	-	hypothetical protein
553	 63.58	0	591448..592710	+	420	121592989	-	Ajs_0559	-	glycosyl transferase, group 1
554	 63.41	0	592732..592977	+	81	121592990	-	Ajs_0560	-	hypothetical protein
555	 66.67	0	593025..593528	+	167	121592991	-	Ajs_0561	-	hypothetical protein
556	 68.28	0	593581..594693	+	370	121592992	-	Ajs_0562	-	hypothetical protein
557	 61.11	-1	594690..595211	+	173	121592993	-	Ajs_0563	-	hypothetical protein
558	 69.39	0	595154..595924	-	256	121592994	-	Ajs_0564	-	hypothetical protein
559	 59.44	-1	596144..596392	-	82	121592995	-	Ajs_0565	-	hypothetical protein
560	 64.22	0	596602..597951	+	449	121592996	-	Ajs_0566	-	DNA-cytosine methyltransferase
561	 60.80	-1	598013..598489	-	158	121592997	-	Ajs_0567	-	hypothetical protein
562	 64.68	0	598489..598941	-	150	121592998	-	Ajs_0568	-	hypothetical protein
563	 58.50	-1	598999..599304	+	101	121592999	-	Ajs_0569	-	hypothetical protein
564	 66.23	0	599542..599994	+	150	121593000	-	Ajs_0570	-	transposase IS3/IS911 family protein
565	 66.03	0	600015..600326	+	103	121593001	-	Ajs_0571	-	IS66 Orf2 family protein
566	 65.02	0	600407..601921	+	504	121593002	-	Ajs_0572	-	transposase IS66
567	 61.42	-1	602919..604310	+	463	121593003	-	Ajs_0574	-	transposase, IS4 family protein
568	 63.27	0	605614..606702	+	362	121593004	-	Ajs_0576	-	transposase, IS4 family protein
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.