IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
387	 60.16	-1	405293..405661	+	122	121592823	-	Ajs_0391	-	50S ribosomal protein L14P
388	 59.19	-1	405672..405992	+	106	121592824	-	Ajs_0392	-	50S ribosomal protein L24P
389	 59.07	-1	406002..406541	+	179	121592825	rplE	Ajs_0393	-	50S ribosomal protein L5
390	 61.44	-1	406551..406856	+	101	121592826	-	Ajs_0394	-	SSU ribosomal protein S14P
391	 59.85	-1	406877..407272	+	131	121592827	-	Ajs_0395	-	SSU ribosomal protein S8P
392	 58.80	-1	407297..407830	+	177	121592828	-	Ajs_0396	-	50S ribosomal protein L6P
393	 62.30	0	407842..408207	+	121	121592829	-	Ajs_0397	-	50S ribosomal protein L18P
394	 61.69	-1	408225..408746	+	173	121592830	rpsE	Ajs_0398	-	30S ribosomal protein S5
395	 52.46	-2	408761..408943	+	60	121592831	-	Ajs_0399	-	50S ribosomal protein L30P
396	 62.04	0	408954..409385	+	143	121592832	-	Ajs_0400	-	50S ribosomal protein L15P
397	 57.05	-2	409409..410728	+	439	121592833	secY	Ajs_0401	-	preprotein translocase subunit SecY
398	 53.51	-2	410873..410986	+	37	121592834	-	Ajs_0402	-	50S ribosomal protein L36P
399	 57.92	-1	411010..411375	+	121	121592835	rpsM	Ajs_0403	-	30S ribosomal protein S13
400	 59.51	-1	411393..411797	+	134	121592836	-	Ajs_0404	-	30S ribosomal protein S11
401	 57.69	-1	411886..412509	+	207	121592837	rpsD	Ajs_0405	-	30S ribosomal protein S4
402	 59.72	-1	412621..413613	+	330	121592838	-	Ajs_0406	-	DNA-directed RNA polymerase subunit alpha
403	 59.49	-1	413703..414092	+	129	121592839	-	Ajs_0407	-	50S ribosomal protein L17P
404	 65.10	0	414342..415682	-	446	121592840	-	Ajs_0408	-	UDP-glucose 6-dehydrogenase
405	 64.09	0	415679..416689	-	336	121592841	-	Ajs_0409	-	NAD-dependent epimerase/dehydratase
406	 68.45	0	416686..418203	-	505	121592842	-	Ajs_0410	-	glycosyltransferase
407	 67.25	0	418307..419338	+	343	121592843	-	Ajs_0411	-	glycosyl transferase family protein
408	 75.70	+1	419335..420264	+	309	121592844	-	Ajs_0412	-	hypothetical protein
409	 73.38	+1	420503..421441	-	312	121592845	-	Ajs_0413	-	uroporphyrin-III C/tetrapyrrole methyltransferase
410	 73.93	+1	421441..421839	+	132	121592846	-	Ajs_0414	-	hypothetical protein
411	 68.18	0	421898..422491	+	197	121592847	-	Ajs_0415	-	phosphoheptose isomerase
412	 70.52	0	422488..423162	+	224	121592848	-	Ajs_0416	-	transport-associated
413	 66.88	0	423260..424189	-	309	121592849	-	Ajs_0417	-	3-hydroxyisobutyrate dehydrogenase
414	 64.03	0	424254..425390	-	378	121592850	-	Ajs_0418	-	twitching motility protein
415	 65.08	0	425437..426066	-	209	121592851	-	Ajs_0419	-	cyclic nucleotide-binding protein
416	 63.51	0	426143..427186	-	347	121592852	-	Ajs_0420	-	twitching motility protein
417	 70.57	0	427226..427942	+	238	121592853	-	Ajs_0421	-	alanine racemase domain-containing protein
418	 69.66	0	427981..429117	+	378	121592854	-	Ajs_0422	-	aminotransferase, class V
419	 70.64	0	429185..430543	+	452	121592855	-	Ajs_0423	-	hypothetical protein
420	 71.17	0	430603..431091	-	162	121592856	-	Ajs_0424	-	hypothetical protein
421	 68.42	0	431151..432635	-	494	121592857	-	Ajs_0425	-	FAD linked oxidase domain-containing protein
422	 60.87	-1	432693..433382	-	229	121592858	-	Ajs_0426	-	MT-A70 family protein
423	 58.16	-1	433385..433972	-	195	121592859	-	Ajs_0427	-	hypothetical protein
424	 62.78	0	434125..434973	-	282	121592860	-	Ajs_0428	-	formyltetrahydrofolate deformylase
425	 72.51	+1	437371..438225	-	284	121592861	-	Ajs_0430	-	hypothetical protein
426	 68.56	0	438515..440950	+	811	121592862	-	Ajs_0431	-	ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
427	 67.45	0	441129..443045	+	638	121592863	-	Ajs_0432	-	signal transduction histidine kinase, nitrate/nitrite-specific, NarQ
428	 68.30	0	443042..443713	+	223	121592864	-	Ajs_0433	-	two component LuxR family transcriptional regulator
429	 63.61	0	443860..445167	+	435	121592865	-	Ajs_0434	-	major facilitator superfamily transporter
430	 63.97	0	445188..446633	+	481	121592866	-	Ajs_0435	-	nitrite transporter
431	 64.75	0	446670..450470	+	1266	121592867	-	Ajs_0436	-	respiratory nitrate reductase alpha subunit apoprotein
432	 64.83	0	450489..452012	+	507	121592868	-	Ajs_0437	-	respiratory nitrate reductase beta subunit
433	 70.24	0	452032..452730	+	232	121592869	-	Ajs_0438	-	respiratory nitrate reductase chaperone NarJ
434	 65.85	0	452727..453461	+	244	121592870	-	Ajs_0439	-	respiratory nitrate reductase gamma subunit
435	 72.64	+1	453552..454388	+	278	121592871	-	Ajs_0440	-	PpiC-type peptidyl-prolyl cis-trans isomerase
436	 68.14	0	454410..455087	+	225	121592872	-	Ajs_0441	-	carbonate dehydratase
437	 72.06	+1	455124..456458	+	444	121592873	-	Ajs_0442	-	NnrS family protein
438	 73.00	+1	456464..457126	+	220	121592874	-	Ajs_0443	-	nitroreductase
439	 69.48	0	457127..457552	+	141	121592875	-	Ajs_0444	-	hypothetical protein
440	 71.61	+1	457557..458102	+	181	121592876	-	Ajs_0445	-	hemerythrin HHE cation binding domain-containing protein
441	 63.23	0	458336..458626	-	96	121592877	-	Ajs_0446	-	hypothetical protein
442	 73.91	+1	458803..460017	-	404	121592878	-	Ajs_0447	-	hypothetical protein
443	 73.00	+1	460022..460810	-	262	121592879	-	Ajs_0448	-	IclR family transcriptional regulator
444	 66.46	0	460926..461909	+	327	121592880	-	Ajs_0449	-	fumarylacetoacetate (FAA) hydrolase
445	 71.41	+1	461986..462954	+	322	121592881	-	Ajs_0450	-	hypothetical protein
446	 71.31	+1	463019..465085	-	688	121592882	-	Ajs_0451	-	molybdopterin oxidoreductase
447	 69.45	0	465207..466355	+	382	121592883	-	Ajs_0452	-	extracellular ligand-binding receptor
448	 67.25	0	466471..467676	+	401	121592884	-	Ajs_0453	-	amidohydrolase
449	 71.39	+1	467777..468877	+	366	121592885	-	Ajs_0454	-	hypothetical protein
450	 62.40	0	468962..469219	+	85	121592886	-	Ajs_0455	-	acyl-CoA-binding protein
451	 71.47	+1	469304..470449	-	381	121592887	-	Ajs_0456	-	putative zinc protease protein
452	 69.05	0	470524..471195	+	223	121592888	-	Ajs_0457	-	DNA-3-methyladenine glycosylase I
453	 72.49	+1	471265..471882	-	205	121592889	-	Ajs_0458	-	hypothetical protein
454	 70.18	0	471935..472105	-	56	121592890	-	Ajs_0459	-	hypothetical protein
455	 68.22	0	472395..473678	+	427	121592891	-	Ajs_0460	-	cyclopropane-fatty-acyl-phospholipid synthase
456	 66.98	0	473699..474022	+	107	121592892	-	Ajs_0461	-	hypothetical protein
457	 67.92	0	474060..475097	-	345	121592893	-	Ajs_0462	-	hypothetical protein
458	 63.64	0	475263..476252	-	329	121592894	-	Ajs_0463	-	hypothetical protein
459	 71.15	0	476444..477691	-	415	121592895	-	Ajs_0464	-	putative phenylacetate-CoA ligase
460	 63.95	0	477784..478593	-	269	121592896	-	Ajs_0465	-	ABC transporter related
461	 67.12	0	478790..480115	-	441	121592897	-	Ajs_0466	-	hypothetical protein
462	 65.18	0	480192..481268	-	358	121592898	-	Ajs_0467	-	inner-membrane translocator
463	 64.95	0	481387..482316	-	309	121592899	-	Ajs_0468	-	inner-membrane translocator
464	 62.09	0	482327..483112	-	261	121592900	-	Ajs_0469	-	ABC transporter related
465	 65.20	0	483135..485183	-	682	121592901	-	Ajs_0470	-	AMP-dependent synthetase and ligase
466	 72.69	+1	485258..487000	+	580	121592902	-	Ajs_0471	-	peptidoglycan binding domain-containing protein
467	 75.56	+1	487005..487814	+	269	121592903	-	Ajs_0472	-	hypothetical protein
468	 71.18	+1	487961..488779	+	272	121592904	-	Ajs_0473	-	Crp/FNR family transcriptional regulator
469	 73.04	+1	488791..489873	+	360	121592905	-	Ajs_0474	-	RNA-binding S4 domain-containing protein
470	 64.87	0	490220..492172	+	650	121592906	-	Ajs_0475	-	heat shock protein 90
471	 66.36	0	492376..493368	+	330	121592907	-	Ajs_0476	-	hypothetical protein
472	 63.33	0	493585..494184	+	199	121592908	-	Ajs_0477	-	hypothetical protein
473	 69.93	0	494329..494880	+	183	121592909	-	Ajs_0478	-	hypothetical protein
474	 68.49	0	494887..495927	-	346	121592910	-	Ajs_0479	-	serine/threonine protein kinase
475	 69.65	0	495963..497402	-	479	121592911	-	Ajs_0480	-	serine/threonine protein kinase
476	 73.25	+1	497446..498204	-	252	121592912	-	Ajs_0481	-	metallophosphoesterase
477	 69.30	0	498335..498751	-	138	121592913	-	Ajs_0482	-	OsmC family protein
478	 68.42	0	498813..499268	-	151	121592914	-	Ajs_0483	-	MarR family transcriptional regulator
479	 67.01	0	504022..504597	-	191	121592915	-	Ajs_0484	-	CRISPR-associated Csy4 family protein
480	 63.35	0	504611..505636	-	341	121592916	-	Ajs_0485	-	CRISPR-associated Csy3 family protein
481	 66.76	0	505693..506775	-	360	121592917	-	Ajs_0486	-	CRISPR-associated Csy2 family protein
482	 59.82	-1	506772..508217	-	481	121592918	-	Ajs_0487	-	CRISPR-associated Csy1 family protein
483	 66.50	0	508222..511758	-	1178	121592919	-	Ajs_0488	-	CRISPR-associated helicase Cas3 family protein
484	 61.29	-1	511755..512759	-	334	121592920	-	Ajs_0489	-	CRISPR-associated Cas1 family protein
485	 71.07	0	512795..513976	-	393	121592921	-	Ajs_0490	-	alanine racemase domain-containing protein
486	 70.23	0	513960..514604	-	214	121592922	-	Ajs_0491	-	phosphoglycerate mutase
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.