IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
352	 69.87	0	363868..364398	-	176	121592788	-	Ajs_0355	-	phosphatidylglycerophosphatase
353	 73.03	+1	364462..365436	-	324	121592789	-	Ajs_0356	-	thiamine-monophosphate kinase
354	 67.02	0	365452..366576	-	374	121592790	-	Ajs_0357	-	carboxylate-amine ligase
355	 69.91	0	366566..367831	-	421	121592791	-	Ajs_0358	-	sodium/hydrogen exchanger
356	 70.30	0	368013..369995	-	660	121592792	-	Ajs_0359	-	putative site-specific recombinase transmembrane protein
357	 64.01	0	369992..370405	-	137	121592793	apaG	Ajs_0360	-	ApaG
358	 65.64	0	370517..371197	+	226	121592794	-	Ajs_0361	-	ribulose-5-phosphate 3-epimerase
359	 71.86	+1	371238..371603	-	121	121592795	-	Ajs_0362	-	hypothetical protein
360	 66.79	0	371770..372555	+	261	121592796	-	Ajs_0363	-	phosphoglycolate phosphatase
361	 69.19	0	372815..374557	-	580	121592797	-	Ajs_0364	-	methyl-accepting chemotaxis sensory transducer
362	 64.51	0	374679..375281	-	200	121592798	-	Ajs_0365	-	putative lipoprotein transmembrane
363	 66.73	0	375578..377137	+	519	121592799	-	Ajs_0366	-	anthranilate synthase component I
364	 68.99	0	377134..377478	+	114	121592800	-	Ajs_0367	-	chorismate mutase
365	 64.92	0	377475..378047	+	190	121592801	-	Ajs_0368	-	anthranilate synthase component II
366	 68.21	0	378145..379179	+	344	121592802	-	Ajs_0369	-	anthranilate phosphoribosyltransferase
367	 67.54	0	379434..380234	+	266	121592803	-	Ajs_0370	-	indole-3-glycerol-phosphate synthase
368	 69.88	0	380373..383045	+	890	121592804	-	Ajs_0371	-	diguanylate cyclase with PAS/PAC sensor
369	 70.73	0	383100..383813	+	237	121592805	-	Ajs_0372	-	uracil-DNA glycosylase
370	 71.62	+1	383814..384701	-	295	121592806	-	Ajs_0373	-	hypothetical protein
371	 71.66	+1	384698..385798	-	366	121592807	-	Ajs_0374	-	S-adenosylmethionine--tRNA-ribosyltransferase-isomerase
372	 70.86	0	387162..389333	+	723	121592808	-	Ajs_0376	-	ATP-dependent DNA helicase RecG
373	 67.81	0	389402..390367	+	321	121592809	-	Ajs_0377	-	LysR family transcriptional regulator
374	 67.82	0	390445..390963	+	172	121592810	-	Ajs_0378	-	Ferritin, Dps family protein
375	 76.80	+2	390990..392528	+	512	121592811	-	Ajs_0379	-	adenylate cyclase
376	 68.61	0	392732..393604	+	290	121592812	-	Ajs_0380	-	4-hydroxybenzoate octaprenyltransferase
377	 72.78	+1	393659..394525	-	288	121592813	-	Ajs_0381	-	pyrroline-5-carboxylate reductase
378	 70.54	0	394655..396151	-	498	121592814	-	Ajs_0382	-	glycerol kinase
379	 64.58	0	396171..396935	-	254	121592815	-	Ajs_0383	-	DeoR family transcriptional regulator
380	 66.76	0	397171..398244	+	357	121592816	-	Ajs_0384	-	ABC transporter related
381	 63.59	0	398248..399321	+	357	121592817	-	Ajs_0385	-	ABC transporter related
382	 62.76	0	399470..400366	+	298	121592818	-	Ajs_0386	-	binding-protein-dependent transport systems inner membrane component
383	 61.62	-1	400359..401171	+	270	121592819	-	Ajs_0387	-	binding-protein-dependent transport systems inner membrane component
384	 64.40	0	401184..401492	+	102	121592820	-	Ajs_0388	-	putative integral membrane protein
385	 65.63	0	401667..403400	+	577	121592821	-	Ajs_0389	-	extracellular solute-binding protein
386	 69.48	0	403503..405101	+	532	121592822	-	Ajs_0390	-	FAD dependent oxidoreductase
387	 60.16	-1	405293..405661	+	122	121592823	-	Ajs_0391	-	50S ribosomal protein L14P
388	 59.19	-1	405672..405992	+	106	121592824	-	Ajs_0392	-	50S ribosomal protein L24P
389	 59.07	-1	406002..406541	+	179	121592825	rplE	Ajs_0393	-	50S ribosomal protein L5
390	 61.44	-1	406551..406856	+	101	121592826	-	Ajs_0394	-	SSU ribosomal protein S14P
391	 59.85	-1	406877..407272	+	131	121592827	-	Ajs_0395	-	SSU ribosomal protein S8P
392	 58.80	-1	407297..407830	+	177	121592828	-	Ajs_0396	-	50S ribosomal protein L6P
393	 62.30	0	407842..408207	+	121	121592829	-	Ajs_0397	-	50S ribosomal protein L18P
394	 61.69	-1	408225..408746	+	173	121592830	rpsE	Ajs_0398	-	30S ribosomal protein S5
395	 52.46	-2	408761..408943	+	60	121592831	-	Ajs_0399	-	50S ribosomal protein L30P
396	 62.04	0	408954..409385	+	143	121592832	-	Ajs_0400	-	50S ribosomal protein L15P
397	 57.05	-2	409409..410728	+	439	121592833	secY	Ajs_0401	-	preprotein translocase subunit SecY
398	 53.51	-2	410873..410986	+	37	121592834	-	Ajs_0402	-	50S ribosomal protein L36P
399	 57.92	-1	411010..411375	+	121	121592835	rpsM	Ajs_0403	-	30S ribosomal protein S13
400	 59.51	-1	411393..411797	+	134	121592836	-	Ajs_0404	-	30S ribosomal protein S11
401	 57.69	-1	411886..412509	+	207	121592837	rpsD	Ajs_0405	-	30S ribosomal protein S4
402	 59.72	-1	412621..413613	+	330	121592838	-	Ajs_0406	-	DNA-directed RNA polymerase subunit alpha
403	 59.49	-1	413703..414092	+	129	121592839	-	Ajs_0407	-	50S ribosomal protein L17P
404	 65.10	0	414342..415682	-	446	121592840	-	Ajs_0408	-	UDP-glucose 6-dehydrogenase
405	 64.09	0	415679..416689	-	336	121592841	-	Ajs_0409	-	NAD-dependent epimerase/dehydratase
406	 68.45	0	416686..418203	-	505	121592842	-	Ajs_0410	-	glycosyltransferase
407	 67.25	0	418307..419338	+	343	121592843	-	Ajs_0411	-	glycosyl transferase family protein
408	 75.70	+1	419335..420264	+	309	121592844	-	Ajs_0412	-	hypothetical protein
409	 73.38	+1	420503..421441	-	312	121592845	-	Ajs_0413	-	uroporphyrin-III C/tetrapyrrole methyltransferase
410	 73.93	+1	421441..421839	+	132	121592846	-	Ajs_0414	-	hypothetical protein
411	 68.18	0	421898..422491	+	197	121592847	-	Ajs_0415	-	phosphoheptose isomerase
412	 70.52	0	422488..423162	+	224	121592848	-	Ajs_0416	-	transport-associated
413	 66.88	0	423260..424189	-	309	121592849	-	Ajs_0417	-	3-hydroxyisobutyrate dehydrogenase
414	 64.03	0	424254..425390	-	378	121592850	-	Ajs_0418	-	twitching motility protein
415	 65.08	0	425437..426066	-	209	121592851	-	Ajs_0419	-	cyclic nucleotide-binding protein
416	 63.51	0	426143..427186	-	347	121592852	-	Ajs_0420	-	twitching motility protein
417	 70.57	0	427226..427942	+	238	121592853	-	Ajs_0421	-	alanine racemase domain-containing protein
418	 69.66	0	427981..429117	+	378	121592854	-	Ajs_0422	-	aminotransferase, class V
419	 70.64	0	429185..430543	+	452	121592855	-	Ajs_0423	-	hypothetical protein
420	 71.17	0	430603..431091	-	162	121592856	-	Ajs_0424	-	hypothetical protein
421	 68.42	0	431151..432635	-	494	121592857	-	Ajs_0425	-	FAD linked oxidase domain-containing protein
422	 60.87	-1	432693..433382	-	229	121592858	-	Ajs_0426	-	MT-A70 family protein
423	 58.16	-1	433385..433972	-	195	121592859	-	Ajs_0427	-	hypothetical protein
424	 62.78	0	434125..434973	-	282	121592860	-	Ajs_0428	-	formyltetrahydrofolate deformylase
425	 72.51	+1	437371..438225	-	284	121592861	-	Ajs_0430	-	hypothetical protein
426	 68.56	0	438515..440950	+	811	121592862	-	Ajs_0431	-	ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
427	 67.45	0	441129..443045	+	638	121592863	-	Ajs_0432	-	signal transduction histidine kinase, nitrate/nitrite-specific, NarQ
428	 68.30	0	443042..443713	+	223	121592864	-	Ajs_0433	-	two component LuxR family transcriptional regulator
429	 63.61	0	443860..445167	+	435	121592865	-	Ajs_0434	-	major facilitator superfamily transporter
430	 63.97	0	445188..446633	+	481	121592866	-	Ajs_0435	-	nitrite transporter
431	 64.75	0	446670..450470	+	1266	121592867	-	Ajs_0436	-	respiratory nitrate reductase alpha subunit apoprotein
432	 64.83	0	450489..452012	+	507	121592868	-	Ajs_0437	-	respiratory nitrate reductase beta subunit
433	 70.24	0	452032..452730	+	232	121592869	-	Ajs_0438	-	respiratory nitrate reductase chaperone NarJ
434	 65.85	0	452727..453461	+	244	121592870	-	Ajs_0439	-	respiratory nitrate reductase gamma subunit
435	 72.64	+1	453552..454388	+	278	121592871	-	Ajs_0440	-	PpiC-type peptidyl-prolyl cis-trans isomerase
436	 68.14	0	454410..455087	+	225	121592872	-	Ajs_0441	-	carbonate dehydratase
437	 72.06	+1	455124..456458	+	444	121592873	-	Ajs_0442	-	NnrS family protein
438	 73.00	+1	456464..457126	+	220	121592874	-	Ajs_0443	-	nitroreductase
439	 69.48	0	457127..457552	+	141	121592875	-	Ajs_0444	-	hypothetical protein
440	 71.61	+1	457557..458102	+	181	121592876	-	Ajs_0445	-	hemerythrin HHE cation binding domain-containing protein
441	 63.23	0	458336..458626	-	96	121592877	-	Ajs_0446	-	hypothetical protein
442	 73.91	+1	458803..460017	-	404	121592878	-	Ajs_0447	-	hypothetical protein
443	 73.00	+1	460022..460810	-	262	121592879	-	Ajs_0448	-	IclR family transcriptional regulator
444	 66.46	0	460926..461909	+	327	121592880	-	Ajs_0449	-	fumarylacetoacetate (FAA) hydrolase
445	 71.41	+1	461986..462954	+	322	121592881	-	Ajs_0450	-	hypothetical protein
446	 71.31	+1	463019..465085	-	688	121592882	-	Ajs_0451	-	molybdopterin oxidoreductase
447	 69.45	0	465207..466355	+	382	121592883	-	Ajs_0452	-	extracellular ligand-binding receptor
448	 67.25	0	466471..467676	+	401	121592884	-	Ajs_0453	-	amidohydrolase
449	 71.39	+1	467777..468877	+	366	121592885	-	Ajs_0454	-	hypothetical protein
450	 62.40	0	468962..469219	+	85	121592886	-	Ajs_0455	-	acyl-CoA-binding protein
451	 71.47	+1	469304..470449	-	381	121592887	-	Ajs_0456	-	putative zinc protease protein
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.