IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3745	 70.16	0	4135807..4137180	-	457	121596181	-	Ajs_3894	-	sun protein
3746	 70.47	0	4137177..4137755	-	192	121596182	-	Ajs_3895	-	hypothetical protein
3747	 64.96	0	4137896..4142125	-	1409	121596183	-	Ajs_3896	-	DNA-directed RNA polymerase subunit beta'
3748	 63.88	0	4142256..4146380	-	1374	121596184	-	Ajs_3897	-	DNA-directed RNA polymerase, beta subunit
3749	 61.42	-1	4146654..4147034	-	126	121596185	-	Ajs_3898	-	50S ribosomal protein L12P
3750	 60.75	-1	4147084..4147590	-	168	121596186	-	Ajs_3899	-	50S ribosomal protein L10P
3751	 63.22	0	4147834..4148529	-	231	121596187	rplA	Ajs_3900	-	50S ribosomal protein L1
3752	 57.87	-1	4148530..4148961	-	143	121596188	-	Ajs_3901	-	50S ribosomal protein L11P
3753	 55.33	-2	4149071..4149661	-	196	121596189	-	Ajs_3902	-	transcription antitermination protein nusG
3754	 54.95	-2	4149661..4150044	-	127	121596190	secE	Ajs_3903	-	preprotein translocase subunit SecE
3755	 63.73	0	4150221..4151411	-	396	121596191	-	Ajs_3904	-	elongation factor Tu
3756	 64.20	0	4152029..4152352	+	107	121596192	-	Ajs_3905	-	transposase IS3/IS911 family protein
3757	 62.78	0	4159212..4160162	-	316	121596193	-	Ajs_3907	-	glutathione synthetase
3758	 67.66	0	4160198..4161406	-	402	121596194	-	Ajs_3908	-	benzoate transporter
3759	 64.85	0	4161510..4163378	-	622	121596195	-	Ajs_3909	-	K+ potassium transporter
3760	 63.81	0	4163519..4164814	-	431	121596196	-	Ajs_3910	-	glutamate--cysteine ligase
3761	 68.37	0	4164879..4166345	-	488	121596197	-	Ajs_3911	-	cation transporter
3762	 70.03	0	4166361..4167815	-	484	121596198	trkA	Ajs_3912	-	potassium transporter peripheral membrane component
3763	 68.15	0	4167880..4169160	-	426	121596199	-	Ajs_3913	-	gamma-glutamyl phosphate reductase
3764	 71.43	+1	4169251..4169544	+	97	121596200	-	Ajs_3914	-	hypothetical protein
3765	 71.92	+1	4169601..4170647	-	348	121596201	holA	Ajs_3915	-	DNA polymerase III subunit delta
3766	 70.98	0	4170721..4171230	-	169	121596202	-	Ajs_3916	-	rare lipoprotein B
3767	 66.78	0	4171244..4173976	-	910	121596203	-	Ajs_3917	-	leucyl-tRNA synthetase
3768	 63.27	0	4174129..4175217	+	362	121596204	-	Ajs_3918	-	transposase, IS4 family protein
3769	 68.85	0	4175445..4176725	+	426	121596205	-	Ajs_3919	-	MscS mechanosensitive ion channel
3770	 69.61	0	4176810..4177250	-	146	121596206	-	Ajs_3920	-	biopolymer transport protein ExbD/TolR
3771	 71.52	+1	4177265..4177924	-	219	121596207	-	Ajs_3921	-	MotA/TolQ/ExbB proton channel
3772	 69.46	0	4177932..4178753	-	273	121596208	-	Ajs_3922	-	dihydrodipicolinate reductase
3773	 66.85	0	4178830..4179381	-	183	121596209	-	Ajs_3923	-	SmpA/OmlA domain-containing protein
3774	 61.11	-1	4179450..4179899	+	149	121596210	-	Ajs_3924	-	ferric uptake regulator family protein
3775	 66.98	0	4179913..4180869	-	318	121596211	-	Ajs_3925	-	HPr kinase/phosphorylase
3776	 63.68	0	4180891..4181358	-	155	121596212	-	Ajs_3926	-	PTS IIA-like nitrogen-regulatory protein PtsN
3777	 58.19	-1	4181492..4181845	-	117	121596213	-	Ajs_3927	-	SSU ribosomal protein S30P / sigma 54 modulation protein
3778	 68.30	0	4182222..4183142	+	306	121596214	-	Ajs_3928	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
3779	 64.82	0	4183196..4185304	-	702	121596215	-	Ajs_3929	-	TonB-dependent siderophore receptor
3780	 73.09	+1	4185786..4186610	-	274	121596216	-	Ajs_3930	-	protein of unknown function DUF306, Meta and HslJ
3781	 65.13	0	4186652..4187560	-	302	121596217	-	Ajs_3931	-	thioredoxin
3782	 69.07	0	4187745..4188326	+	193	121596218	-	Ajs_3932	-	PfpI family intracellular peptidase
3783	 70.90	0	4188426..4188803	+	125	121596219	-	Ajs_3933	-	hypothetical protein
3784	 73.29	+1	4188875..4189372	+	165	121596220	-	Ajs_3934	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
3785	 70.83	0	4189369..4190544	+	391	121596221	-	Ajs_3935	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
3786	 72.67	+1	4190556..4191554	+	332	121596222	-	Ajs_3936	-	translation factor SUA5
3787	 66.88	0	4191627..4192580	+	317	121596223	-	Ajs_3937	-	lipase
3788	 70.53	0	4192724..4193266	-	180	121596224	-	Ajs_3938	-	hypothetical protein
3789	 72.47	+1	4193452..4194933	-	493	121596225	-	Ajs_3939	-	D-alanyl-D-alanine carboxypeptidase PBP3
3790	 74.68	+1	4194984..4195694	+	236	121596226	-	Ajs_3940	-	peptidase M22, glycoprotease
3791	 69.60	0	4195691..4196167	+	158	121596227	-	Ajs_3941	-	SSU ribosomal protein S18P alanine acetyltransferase
3792	 78.12	+2	4196164..4196940	+	258	121596228	-	Ajs_3942	-	phage SPO1 DNA polymerase-related protein
3793	 64.24	0	4197120..4197614	+	164	121596229	-	Ajs_3943	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
3794	 68.18	0	4197655..4199502	+	615	121596230	-	Ajs_3944	-	aldehyde ferredoxin oxidoreductase
3795	 72.62	+1	4199626..4200918	+	430	121596231	-	Ajs_3945	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
3796	 68.24	0	4201008..4201262	+	84	121596232	-	Ajs_3946	-	thiamineS protein
3797	 76.40	+2	4201325..4201591	+	88	121596233	-	Ajs_3947	-	hypothetical protein
3798	 63.12	0	4201823..4202809	+	328	121596234	-	Ajs_3948	-	magnesium and cobalt transport protein CorA
3799	 68.65	0	4203022..4203777	-	251	121596235	-	Ajs_3949	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
3800	 65.95	0	4203863..4205542	-	559	121596236	-	Ajs_3950	-	AMP-dependent synthetase and ligase
3801	 66.25	0	4205672..4207096	-	474	121596237	-	Ajs_3951	-	NAD(P) transhydrogenase, beta subunit
3802	 62.12	0	4207108..4207437	-	109	121596238	-	Ajs_3952	-	NAD(P) transhydrogenase, subunit alpha part 2
3803	 69.20	0	4207486..4208196	-	236	121596239	-	Ajs_3953	-	hypothetical protein
3804	 69.62	0	4208230..4209345	-	371	121596240	-	Ajs_3954	-	NAD(P)(+) transhydrogenase (AB-specific)
3805	 65.45	0	4209557..4210621	-	354	121596241	-	Ajs_3955	-	fructose-bisphosphate aldolase
3806	 67.64	0	4210775..4212211	-	478	121596242	-	Ajs_3956	-	pyruvate kinase
3807	 69.94	0	4212295..4214460	-	721	121596243	-	Ajs_3957	-	aminopeptidase P
3808	 71.45	+1	4214616..4215431	-	271	121596244	-	Ajs_3958	-	nucleotidyl transferase
3809	 69.02	0	4215595..4217631	+	678	121596245	-	Ajs_3959	-	transketolase
3810	 64.07	0	4217685..4218686	+	333	121596246	-	Ajs_3960	-	glyceraldehyde-3-phosphate dehydrogenase
3811	 70.94	0	4218831..4219391	+	186	121596247	-	Ajs_3961	-	hypothetical protein
3812	 70.14	0	4219489..4219833	-	114	121596248	-	Ajs_3962	-	ribosomal subunit interface protein, putative
3813	 70.81	0	4220005..4220922	+	305	121596249	-	Ajs_3963	-	peptidase C26
3814	 69.41	0	4220980..4221453	-	157	121596250	-	Ajs_3964	-	peptidylprolyl isomerase, FKBP-type
3815	 72.32	+1	4221565..4222608	-	347	121596251	-	Ajs_3965	-	pirin domain-containing protein
3816	 69.46	0	4222872..4223300	-	142	121596252	-	Ajs_3966	-	3-demethylubiquinone-9 3-methyltransferase
3817	 73.57	+1	4223343..4223762	-	139	121596253	-	Ajs_3967	-	hypothetical protein
3818	 74.23	+1	4223942..4224946	-	334	121596254	-	Ajs_3968	-	short-chain dehydrogenase/reductase SDR
3819	 71.66	+1	4225118..4225678	-	186	121596255	-	Ajs_3969	-	hypothetical protein
3820	 74.02	+1	4225743..4226504	-	253	121596256	-	Ajs_3970	-	DTW domain-containing protein
3821	 71.74	+1	4226688..4227593	+	301	121596257	-	Ajs_3971	-	IclR family transcriptional regulator
3822	 73.61	+1	4227590..4228741	+	383	121596258	-	Ajs_3972	-	thiolase
3823	 73.81	+1	4228747..4229124	+	125	121596259	-	Ajs_3973	-	hypothetical protein
3824	 69.10	0	4229306..4230292	+	328	121596260	-	Ajs_3974	-	hypothetical protein
3825	 72.56	+1	4230496..4232583	+	695	121596261	-	Ajs_3975	-	CoA-binding domain-containing protein
3826	 68.38	0	4232803..4233501	-	232	121596262	-	Ajs_3976	-	glutathione S-transferase domain-containing protein
3827	 71.78	+1	4233516..4234277	-	253	121596263	fabG	Ajs_3977	-	3-ketoacyl-(acyl-carrier-protein) reductase
3828	 70.48	0	4234296..4234688	-	130	121596264	-	Ajs_3978	-	glyoxalase/bleomycin resistance protein/dioxygenase
3829	 45.69	-2	4235570..4236160	-	196	121596265	-	Ajs_3979	-	hypothetical protein
3830	 47.24	-2	4236243..4237565	-	440	121596266	-	Ajs_3980	-	hypothetical protein
3831	 32.58	-2	4237635..4238033	-	132	121596267	-	Ajs_3981	-	hypothetical protein
3832	 61.38	-1	4238040..4238285	-	81	121596268	-	Ajs_3982	-	hypothetical protein
3833	 42.88	-2	4238411..4238923	-	170	121596269	-	Ajs_3983	-	putative signal peptide protein
3834	 48.48	-2	4239000..4239329	-	109	121596270	-	Ajs_3984	-	hypothetical protein
3835	 45.74	-2	4240104..4240643	-	179	121596271	-	Ajs_3985	-	hypothetical protein
3836	 60.92	-1	4241756..4241929	-	57	121596272	-	Ajs_3988	-	hypothetical protein
3837	 78.06	+2	4242197..4242547	-	116	121596273	-	Ajs_3989	-	hypothetical protein
3838	 66.56	0	4242552..4245497	-	981	121596274	-	Ajs_3990	-	DNA topoisomerase III
3839	 67.76	0	4245608..4246249	+	213	121596275	-	Ajs_3991	-	nuclear protein SET
3840	 74.94	+1	4246246..4247103	+	285	121596276	-	Ajs_3992	-	biotin--acetyl-CoA-carboxylase ligase
3841	 75.41	+1	4247162..4247893	+	243	121596277	-	Ajs_3993	-	sporulation domain-containing protein
3842	 70.18	0	4248015..4248983	-	322	121596278	-	Ajs_3994	-	hypothetical protein
3843	 71.25	+1	4249285..4250223	-	312	121596279	-	Ajs_3995	-	N-formylglutamate amidohydrolase
3844	 67.70	0	4250242..4251207	-	321	121596280	-	Ajs_3996	-	hypothetical protein
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.