IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3657	 65.46	0	4040251..4041246	-	331	121596093	-	Ajs_3806	-	flagellar motor switch protein FliG
3658	 69.79	0	4041280..4042974	-	564	121596094	-	Ajs_3807	-	flagellar M-ring protein FliF
3659	 64.74	0	4043147..4043458	+	103	121596095	-	Ajs_3808	-	flagellar hook-basal body complex subunit FliE
3660	 64.33	0	4043640..4043939	-	99	121596096	-	Ajs_3809	-	flagellar protein FliT
3661	 60.33	-1	4043942..4044367	-	141	121596097	-	Ajs_3810	-	flagellar protein FliS
3662	 61.94	0	4044510..4045949	-	479	121596098	-	Ajs_3811	-	flagellar hook-associated 2 domain-containing protein
3663	 60.48	-1	4046143..4046982	-	279	121596099	-	Ajs_3812	-	flagellin domain-containing protein
3664	 60.83	-1	4047244..4048083	-	279	121596100	-	Ajs_3813	-	flagellin domain-containing protein
3665	 61.29	-1	4048345..4049181	-	278	121596101	-	Ajs_3814	-	flagellin domain-containing protein
3666	 65.39	0	4049628..4050488	+	286	121596102	-	Ajs_3815	-	MotA/TolQ/ExbB proton channel
3667	 64.76	0	4050515..4051456	+	313	121596103	-	Ajs_3816	-	OmpA/MotB domain-containing protein
3668	 60.72	-1	4051518..4051904	+	128	121596104	-	Ajs_3817	-	response regulator receiver protein
3669	 68.73	0	4051907..4052536	+	209	121596105	-	Ajs_3818	-	chemotaxis phosphatase, CheZ
3670	 68.54	0	4052759..4053931	+	390	121596106	-	Ajs_3819	-	type III secretion exporter
3671	 68.06	0	4053928..4056012	+	694	121596107	-	Ajs_3820	-	flagellar biosynthesis protein FlhA
3672	 70.94	0	4056009..4057601	+	530	121596108	-	Ajs_3821	-	GTP-binding signal recognition particle
3673	 72.68	+1	4057591..4058388	+	265	121596109	-	Ajs_3822	-	hypothetical protein
3674	 66.81	0	4058393..4059106	+	237	121596110	-	Ajs_3823	-	FliA/WhiG family RNA polymerase sigma factor
3675	 69.47	0	4059318..4059674	-	118	121596111	-	Ajs_3824	-	hypothetical protein
3676	 68.52	0	4059722..4060045	-	107	121596112	-	Ajs_3825	-	anti-sigma-28 factor, FlgM
3677	 70.12	0	4060139..4060891	-	250	121596113	-	Ajs_3826	-	SAF domain-containing protein
3678	 66.89	0	4061078..4061533	+	151	121596114	-	Ajs_3827	-	flagellar basal-body rod protein FlgB
3679	 65.93	0	4061555..4061959	+	134	121596115	-	Ajs_3828	-	flagellar basal-body rod protein FlgC
3680	 66.67	0	4061981..4062631	+	216	121596116	-	Ajs_3829	-	flagellar hook capping protein
3681	 64.56	0	4062660..4064276	+	538	121596117	-	Ajs_3830	-	hypothetical protein
3682	 70.99	0	4064303..4065043	+	246	121596118	-	Ajs_3831	-	flagellar basal-body rod protein FlgF
3683	 65.77	0	4065062..4065844	+	260	121596119	-	Ajs_3832	-	flagellar basal-body rod protein FlgG
3684	 69.60	0	4065868..4066584	+	238	121596120	-	Ajs_3833	-	flagellar L-ring protein
3685	 73.19	+1	4066585..4067565	+	326	121596121	-	Ajs_3834	-	hypothetical protein
3686	 71.11	0	4067743..4068867	+	374	121596122	flgI	Ajs_3835	-	flagellar basal body P-ring protein
3687	 70.15	0	4068920..4069894	+	324	121596123	-	Ajs_3836	-	flagellar rod assembly protein/muramidase FlgJ
3688	 63.34	0	4069921..4071996	+	691	121596124	-	Ajs_3837	-	flagellar hook-associated protein FlgK
3689	 69.44	0	4072008..4073270	+	420	121596125	-	Ajs_3838	-	flagellar hook-associated protein 3
3690	 71.62	+1	4073359..4074570	+	403	121596126	-	Ajs_3839	-	putative signal transduction protein
3691	 69.95	0	4074587..4076047	+	486	121596127	-	Ajs_3840	-	sodium:neurotransmitter symporter
3692	 73.77	+1	4076186..4077706	+	506	121596128	-	Ajs_3841	-	2-nitropropane dioxygenase, NPD
3693	 71.06	0	4077756..4079213	-	485	121596129	-	Ajs_3842	-	GntR family transcriptional regulator
3694	 70.17	0	4079358..4079957	+	199	121596130	-	Ajs_3843	-	hypothetical protein
3695	 74.18	+1	4080026..4080970	+	314	121596131	-	Ajs_3844	-	hypothetical protein
3696	 69.40	0	4081034..4082314	+	426	121596132	-	Ajs_3845	-	GntR family transcriptional regulator
3697	 73.17	+1	4082428..4083303	+	291	121596133	-	Ajs_3846	-	PhzF family phenazine biosynthesis protein
3698	 71.49	+1	4083300..4084274	+	324	121596134	-	Ajs_3847	-	hypothetical protein
3699	 71.35	+1	4084452..4085540	+	362	121596135	-	Ajs_3848	-	hypothetical protein
3700	 66.07	0	4085574..4086752	+	392	121596136	-	Ajs_3849	-	putative UreA/short-chain amide ABC transporter
3701	 71.03	0	4087098..4088219	+	373	121596137	-	Ajs_3850	-	short-chain dehydrogenase/reductase SDR
3702	 69.05	0	4088280..4088951	+	223	121596138	-	Ajs_3851	-	phosphoglycerate mutase
3703	 70.00	0	4089017..4089886	-	289	121596139	-	Ajs_3852	-	creatininase
3704	 72.38	+1	4089895..4090647	+	250	121596140	-	Ajs_3853	-	metal-dependent hydrolases related to alanyl-tRNA synthetase
3705	 72.40	+1	4090700..4092916	+	738	121596141	-	Ajs_3854	-	cytochrome c biogenesis protein, transmembrane region
3706	 73.83	+1	4092917..4093963	-	348	121596142	-	Ajs_3855	-	hypothetical protein
3707	 75.14	+1	4094145..4095395	+	416	121596143	-	Ajs_3856	-	Na+/H+ antiporter NhaA
3708	 67.44	0	4095445..4095960	+	171	121596144	-	Ajs_3857	-	CoA-binding domain-containing protein
3709	 69.91	0	4096015..4097340	+	441	121596145	-	Ajs_3858	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
3710	 65.04	0	4097393..4098376	-	327	121596146	-	Ajs_3859	-	integral membrane protein TerC
3711	 71.41	+1	4098504..4099430	+	308	121596147	-	Ajs_3860	-	LysR family transcriptional regulator
3712	 69.54	0	4099532..4100644	+	370	121596148	-	Ajs_3861	-	uroporphyrinogen decarboxylase
3713	 73.29	+1	4101249..4103468	+	739	121596149	-	Ajs_3862	-	primosomal protein N'
3714	 68.21	0	4103607..4104707	+	366	121596150	-	Ajs_3863	-	L-asparaginases, type II
3715	 70.85	0	4104916..4105872	-	318	121596151	-	Ajs_3864	-	auxin efflux carrier
3716	 67.92	0	4106049..4108118	+	689	121596152	-	Ajs_3865	-	UvrD/REP helicase
3717	 68.74	0	4108123..4108557	+	144	121596153	-	Ajs_3866	-	hypothetical protein
3718	 70.77	0	4108563..4109780	+	405	121596154	-	Ajs_3867	-	phospholipase A1
3719	 67.96	0	4110022..4110408	+	128	121596155	-	Ajs_3868	-	hypothetical protein
3720	 72.39	+1	4110484..4110972	-	162	121596156	-	Ajs_3869	-	UspA domain-containing protein
3721	 66.67	0	4111075..4112247	+	390	121596157	-	Ajs_3870	-	queuine tRNA-ribosyltransferase
3722	 73.04	+1	4112327..4112938	+	203	121596158	-	Ajs_3871	-	hypothetical protein
3723	 72.01	+1	4113074..4114234	-	386	121596159	-	Ajs_3872	-	hypothetical protein
3724	 73.91	+1	4114313..4115113	-	266	121596160	-	Ajs_3873	-	hypothetical protein
3725	 75.60	+1	4115116..4115574	-	152	121596161	-	Ajs_3874	-	hypothetical protein
3726	 68.64	0	4115598..4116206	-	202	121596162	-	Ajs_3875	-	hypothetical protein
3727	 64.06	0	4116209..4116784	-	191	121596163	-	Ajs_3876	-	AsnC family transcriptional regulator
3728	 66.95	0	4116805..4117875	+	356	121596164	-	Ajs_3877	-	1-aminocyclopropane-1-carboxylate deaminase
3729	 68.35	0	4117915..4119870	-	651	121596165	-	Ajs_3878	-	phospholipid/glycerol acyltransferase
3730	 68.28	0	4120005..4120748	+	247	121596166	-	Ajs_3879	-	XRE family transcriptional regulator
3731	 70.75	0	4120767..4121207	-	146	121596167	-	Ajs_3880	-	alcohol dehydrogenase
3732	 69.36	0	4121233..4121640	-	135	121596168	-	Ajs_3881	-	hypothetical protein
3733	 72.18	+1	4122003..4122419	+	138	121596169	-	Ajs_3882	-	hypothetical protein
3734	 67.88	0	4122586..4123572	+	328	121596170	-	Ajs_3883	-	hypothetical protein
3735	 72.89	+1	4123605..4125083	+	492	121596171	-	Ajs_3884	-	FAD dependent oxidoreductase
3736	 74.86	+1	4125080..4126189	+	369	121596172	-	Ajs_3885	-	uncharacterized peroxidase-related enzyme
3737	 71.78	+1	4126566..4127876	+	436	121596173	-	Ajs_3886	-	D-amino-acid dehydrogenase
3738	 72.59	+1	4127948..4129213	-	421	121596174	-	Ajs_3887	-	hypothetical protein
3739	 71.71	+1	4129254..4130225	-	323	121596175	-	Ajs_3888	-	hypothetical protein
3740	 65.00	0	4130446..4130865	+	139	121596176	-	Ajs_3889	-	histone family protein DNA-binding protein
3741	 67.07	0	4130951..4131703	-	250	121596177	-	Ajs_3890	-	protein tyrosine/serine phosphatase
3742	 61.66	-1	4132165..4132863	-	232	121596178	-	Ajs_3891	-	two component Fis family transcriptional regulator
3743	 68.68	0	4132900..4135188	-	762	121596179	-	Ajs_3892	-	multi-sensor signal transduction histidine kinase
3744	 65.33	0	4135185..4135856	-	223	121596180	-	Ajs_3893	-	hypothetical protein
3745	 70.16	0	4135807..4137180	-	457	121596181	-	Ajs_3894	-	sun protein
3746	 70.47	0	4137177..4137755	-	192	121596182	-	Ajs_3895	-	hypothetical protein
3747	 64.96	0	4137896..4142125	-	1409	121596183	-	Ajs_3896	-	DNA-directed RNA polymerase subunit beta'
3748	 63.88	0	4142256..4146380	-	1374	121596184	-	Ajs_3897	-	DNA-directed RNA polymerase, beta subunit
3749	 61.42	-1	4146654..4147034	-	126	121596185	-	Ajs_3898	-	50S ribosomal protein L12P
3750	 60.75	-1	4147084..4147590	-	168	121596186	-	Ajs_3899	-	50S ribosomal protein L10P
3751	 63.22	0	4147834..4148529	-	231	121596187	rplA	Ajs_3900	-	50S ribosomal protein L1
3752	 57.87	-1	4148530..4148961	-	143	121596188	-	Ajs_3901	-	50S ribosomal protein L11P
3753	 55.33	-2	4149071..4149661	-	196	121596189	-	Ajs_3902	-	transcription antitermination protein nusG
3754	 54.95	-2	4149661..4150044	-	127	121596190	secE	Ajs_3903	-	preprotein translocase subunit SecE
3755	 63.73	0	4150221..4151411	-	396	121596191	-	Ajs_3904	-	elongation factor Tu
3756	 64.20	0	4152029..4152352	+	107	121596192	-	Ajs_3905	-	transposase IS3/IS911 family protein
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.