IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3604	 61.62	-1	3978311..3979321	-	336	121596040	-	Ajs_3751	-	porin
3605	 63.95	0	3979560..3981254	-	564	121596041	-	Ajs_3752	-	major facilitator superfamily transporter
3606	 70.95	0	3981701..3982354	-	217	121596042	-	Ajs_3753	-	DSBA oxidoreductase
3607	 63.16	0	3982351..3982635	-	94	121596043	-	Ajs_3754	-	hypothetical protein
3608	 69.33	0	3982632..3983120	-	162	121596044	-	Ajs_3755	-	YbaK/prolyl-tRNA synthetase associated region
3609	 68.69	0	3983234..3984967	+	577	121596045	-	Ajs_3756	-	diguanylate cyclase
3610	 66.23	0	3984982..3985896	-	304	121596046	-	Ajs_3757	-	hydroxymethylglutaryl-CoA lyase
3611	 68.84	0	3985925..3986845	-	306	121596047	-	Ajs_3758	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
3612	 68.00	0	3986884..3988902	-	672	121596048	-	Ajs_3759	-	3-methylcrotonoyl-CoA carboxylase, alpha subunit
3613	 69.72	0	3988903..3989622	-	239	121596049	-	Ajs_3760	-	putative transmembrane protein
3614	 69.09	0	3989629..3990411	-	260	121596050	-	Ajs_3761	-	enoyl-CoA hydratase
3615	 70.00	0	3990408..3990917	-	169	121596051	-	Ajs_3762	-	DinB family protein
3616	 67.23	0	3990928..3992532	-	534	121596052	-	Ajs_3763	-	propionyl-CoA carboxylase
3617	 67.65	0	3992547..3994283	-	578	121596053	-	Ajs_3764	-	acyl-CoA synthetase
3618	 70.26	0	3994429..3995514	+	361	121596054	-	Ajs_3765	-	AraC family transcriptional regulator
3619	 57.70	-1	3995893..3996873	-	326	121596055	-	Ajs_3766	-	transposase, IS4 family protein
3620	 67.56	0	3997634..3998302	+	222	121596056	-	Ajs_3767	-	glutathione S-transferase domain-containing protein
3621	 62.20	0	3998347..3999129	+	260	121596057	-	Ajs_3768	-	hypothetical protein
3622	 70.36	0	3999232..4000938	+	568	121596058	-	Ajs_3769	-	AMP-dependent synthetase and ligase
3623	 64.22	0	4001058..4001753	-	231	121596059	-	Ajs_3770	-	hypothetical protein
3624	 68.06	0	4002057..4002488	-	143	121596060	-	Ajs_3771	-	hypothetical protein
3625	 66.27	0	4002804..4004564	+	586	121596061	-	Ajs_3772	-	methyl-accepting chemotaxis sensory transducer
3626	 70.14	0	4004832..4005494	-	220	121596062	-	Ajs_3773	-	HAD family hydrolase
3627	 67.02	0	4005565..4006695	-	376	121596063	-	Ajs_3774	-	acyl-CoA dehydrogenase domain-containing protein
3628	 71.60	+1	4006745..4007413	-	222	121596064	-	Ajs_3775	-	short chain dehydrogenase
3629	 67.67	0	4007516..4008706	-	396	121596065	-	Ajs_3776	-	acetyl-CoA acetyltransferases
3630	 62.84	0	4008703..4010532	-	609	121596066	aceK	Ajs_3777	-	bifunctional isocitrate dehydrogenase kinase/phosphatase protein
3631	 64.56	0	4010570..4011232	-	220	121596067	-	Ajs_3778	-	carbonate dehydratase
3632	 61.80	0	4011288..4012478	-	396	121596068	-	Ajs_3779	-	isovaleryl-CoA dehydrogenase
3633	 56.93	-2	4012608..4013018	-	136	121596069	-	Ajs_3780	-	MerR family transcriptional regulator
3634	 62.10	0	4013322..4014548	-	408	121596070	-	Ajs_3782	-	transposase, mutator type
3635	 62.98	0	4014781..4015593	+	270	121596071	-	Ajs_3784	-	integrase catalytic subunit
3636	 62.85	0	4021542..4023428	+	628	121596072	-	Ajs_3785	-	ABC transporter related
3637	 66.31	0	4023438..4024550	-	370	121596073	-	Ajs_3786	-	response regulator receiver modulated CheB methylesterase
3638	 63.82	0	4024588..4025325	-	245	121596074	-	Ajs_3787	-	chemoreceptor glutamine deamidase CheD
3639	 65.21	0	4025365..4026258	-	297	121596075	-	Ajs_3788	-	MCP methyltransferase, CheR-type
3640	 62.99	0	4026307..4026795	-	162	121596076	-	Ajs_3789	-	CheW protein
3641	 67.14	0	4026829..4028961	-	710	121596077	-	Ajs_3790	-	CheA signal transduction histidine kinases
3642	 63.09	0	4029013..4029375	-	120	121596078	-	Ajs_3791	-	response regulator receiver protein
3643	 63.98	0	4029444..4029890	-	148	121596079	-	Ajs_3792	-	hypothetical protein
3644	 70.94	0	4030040..4031161	+	373	121596080	-	Ajs_3793	-	response regulator receiver sensor signal transduction histidine kinase
3645	 66.98	0	4031158..4031787	+	209	121596081	-	Ajs_3794	-	two component LuxR family transcriptional regulator
3646	 65.89	0	4031886..4032656	-	256	121596082	-	Ajs_3795	-	flagellar biosynthetic protein FliR
3647	 66.30	0	4032662..4032931	-	89	121596083	-	Ajs_3796	-	flagellar biosynthetic protein FliQ
3648	 67.06	0	4032942..4033697	-	251	121596084	fliP	Ajs_3797	-	flagellar biosynthesis protein FliP
3649	 72.49	+1	4033690..4034067	-	125	121596085	-	Ajs_3798	-	flagellar biosynthesis protein, FliO
3650	 66.22	0	4034060..4034509	-	149	121596086	-	Ajs_3799	-	flagellar motor switch protein FliN
3651	 65.07	0	4034499..4035503	-	334	121596087	-	Ajs_3800	-	flagellar motor switch protein FliM
3652	 67.89	0	4035519..4036091	-	190	121596088	-	Ajs_3801	-	flagellar basal body-associated protein FliL
3653	 77.19	+2	4036309..4037619	-	436	121596089	-	Ajs_3802	-	flagellar hook-length control protein
3654	 70.32	0	4037622..4038086	-	154	121596090	-	Ajs_3803	-	flagellar export protein FliJ
3655	 70.61	0	4038114..4039481	-	455	121596091	-	Ajs_3804	-	flagellar protein export ATPase FliI
3656	 72.11	+1	4039507..4040241	-	244	121596092	-	Ajs_3805	-	flagellar assembly protein FliH
3657	 65.46	0	4040251..4041246	-	331	121596093	-	Ajs_3806	-	flagellar motor switch protein FliG
3658	 69.79	0	4041280..4042974	-	564	121596094	-	Ajs_3807	-	flagellar M-ring protein FliF
3659	 64.74	0	4043147..4043458	+	103	121596095	-	Ajs_3808	-	flagellar hook-basal body complex subunit FliE
3660	 64.33	0	4043640..4043939	-	99	121596096	-	Ajs_3809	-	flagellar protein FliT
3661	 60.33	-1	4043942..4044367	-	141	121596097	-	Ajs_3810	-	flagellar protein FliS
3662	 61.94	0	4044510..4045949	-	479	121596098	-	Ajs_3811	-	flagellar hook-associated 2 domain-containing protein
3663	 60.48	-1	4046143..4046982	-	279	121596099	-	Ajs_3812	-	flagellin domain-containing protein
3664	 60.83	-1	4047244..4048083	-	279	121596100	-	Ajs_3813	-	flagellin domain-containing protein
3665	 61.29	-1	4048345..4049181	-	278	121596101	-	Ajs_3814	-	flagellin domain-containing protein
3666	 65.39	0	4049628..4050488	+	286	121596102	-	Ajs_3815	-	MotA/TolQ/ExbB proton channel
3667	 64.76	0	4050515..4051456	+	313	121596103	-	Ajs_3816	-	OmpA/MotB domain-containing protein
3668	 60.72	-1	4051518..4051904	+	128	121596104	-	Ajs_3817	-	response regulator receiver protein
3669	 68.73	0	4051907..4052536	+	209	121596105	-	Ajs_3818	-	chemotaxis phosphatase, CheZ
3670	 68.54	0	4052759..4053931	+	390	121596106	-	Ajs_3819	-	type III secretion exporter
3671	 68.06	0	4053928..4056012	+	694	121596107	-	Ajs_3820	-	flagellar biosynthesis protein FlhA
3672	 70.94	0	4056009..4057601	+	530	121596108	-	Ajs_3821	-	GTP-binding signal recognition particle
3673	 72.68	+1	4057591..4058388	+	265	121596109	-	Ajs_3822	-	hypothetical protein
3674	 66.81	0	4058393..4059106	+	237	121596110	-	Ajs_3823	-	FliA/WhiG family RNA polymerase sigma factor
3675	 69.47	0	4059318..4059674	-	118	121596111	-	Ajs_3824	-	hypothetical protein
3676	 68.52	0	4059722..4060045	-	107	121596112	-	Ajs_3825	-	anti-sigma-28 factor, FlgM
3677	 70.12	0	4060139..4060891	-	250	121596113	-	Ajs_3826	-	SAF domain-containing protein
3678	 66.89	0	4061078..4061533	+	151	121596114	-	Ajs_3827	-	flagellar basal-body rod protein FlgB
3679	 65.93	0	4061555..4061959	+	134	121596115	-	Ajs_3828	-	flagellar basal-body rod protein FlgC
3680	 66.67	0	4061981..4062631	+	216	121596116	-	Ajs_3829	-	flagellar hook capping protein
3681	 64.56	0	4062660..4064276	+	538	121596117	-	Ajs_3830	-	hypothetical protein
3682	 70.99	0	4064303..4065043	+	246	121596118	-	Ajs_3831	-	flagellar basal-body rod protein FlgF
3683	 65.77	0	4065062..4065844	+	260	121596119	-	Ajs_3832	-	flagellar basal-body rod protein FlgG
3684	 69.60	0	4065868..4066584	+	238	121596120	-	Ajs_3833	-	flagellar L-ring protein
3685	 73.19	+1	4066585..4067565	+	326	121596121	-	Ajs_3834	-	hypothetical protein
3686	 71.11	0	4067743..4068867	+	374	121596122	flgI	Ajs_3835	-	flagellar basal body P-ring protein
3687	 70.15	0	4068920..4069894	+	324	121596123	-	Ajs_3836	-	flagellar rod assembly protein/muramidase FlgJ
3688	 63.34	0	4069921..4071996	+	691	121596124	-	Ajs_3837	-	flagellar hook-associated protein FlgK
3689	 69.44	0	4072008..4073270	+	420	121596125	-	Ajs_3838	-	flagellar hook-associated protein 3
3690	 71.62	+1	4073359..4074570	+	403	121596126	-	Ajs_3839	-	putative signal transduction protein
3691	 69.95	0	4074587..4076047	+	486	121596127	-	Ajs_3840	-	sodium:neurotransmitter symporter
3692	 73.77	+1	4076186..4077706	+	506	121596128	-	Ajs_3841	-	2-nitropropane dioxygenase, NPD
3693	 71.06	0	4077756..4079213	-	485	121596129	-	Ajs_3842	-	GntR family transcriptional regulator
3694	 70.17	0	4079358..4079957	+	199	121596130	-	Ajs_3843	-	hypothetical protein
3695	 74.18	+1	4080026..4080970	+	314	121596131	-	Ajs_3844	-	hypothetical protein
3696	 69.40	0	4081034..4082314	+	426	121596132	-	Ajs_3845	-	GntR family transcriptional regulator
3697	 73.17	+1	4082428..4083303	+	291	121596133	-	Ajs_3846	-	PhzF family phenazine biosynthesis protein
3698	 71.49	+1	4083300..4084274	+	324	121596134	-	Ajs_3847	-	hypothetical protein
3699	 71.35	+1	4084452..4085540	+	362	121596135	-	Ajs_3848	-	hypothetical protein
3700	 66.07	0	4085574..4086752	+	392	121596136	-	Ajs_3849	-	putative UreA/short-chain amide ABC transporter
3701	 71.03	0	4087098..4088219	+	373	121596137	-	Ajs_3850	-	short-chain dehydrogenase/reductase SDR
3702	 69.05	0	4088280..4088951	+	223	121596138	-	Ajs_3851	-	phosphoglycerate mutase
3703	 70.00	0	4089017..4089886	-	289	121596139	-	Ajs_3852	-	creatininase
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.