IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3553	 72.80	+1	3914852..3917722	+	956	121595989	-	Ajs_3698	-	DnaK-related protein
3554	 70.52	0	3917987..3919438	-	483	121595990	-	Ajs_3699	-	endoproteinase Arg-C
3555	 66.14	0	3919477..3920049	-	190	121595991	-	Ajs_3700	-	Holliday junction DNA helicase RuvA
3556	 67.56	0	3920052..3921059	+	335	121595992	-	Ajs_3701	-	PhoH family protein
3557	 67.10	0	3921125..3921583	+	152	121595993	-	Ajs_3702	-	hypothetical protein
3558	 63.27	0	3921809..3922897	+	362	121595994	-	Ajs_3703	-	transposase, IS4 family protein
3559	 70.14	0	3923067..3923843	+	258	121595995	-	Ajs_3704	-	hypothetical protein
3560	 65.74	0	3923870..3925279	-	469	121595996	-	Ajs_3705	-	DEAD/DEAH box helicase domain-containing protein
3561	 71.61	+1	3925289..3925753	-	154	121595997	-	Ajs_3706	-	D-tyrosyl-tRNA deacylase
3562	 69.90	0	3925750..3926709	-	319	121595998	-	Ajs_3707	-	cation diffusion facilitator family transporter
3563	 68.88	0	3926730..3928943	+	737	121595999	-	Ajs_3708	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
3564	 68.22	0	3929005..3930486	+	493	121596000	-	Ajs_3709	-	AMP nucleosidase
3565	 74.44	+1	3930559..3931818	-	419	121596001	-	Ajs_3710	-	hypothetical protein
3566	 71.30	+1	3931958..3932929	+	323	121596002	-	Ajs_3711	-	ABC transporter related
3567	 65.80	0	3932931..3933740	+	269	121596003	-	Ajs_3712	-	ABC transporter
3568	 68.23	0	3934234..3935580	+	448	121596004	-	Ajs_3714	-	putative GAF sensor protein
3569	 67.82	0	3935601..3936032	-	143	121596005	-	Ajs_3715	-	hypothetical protein
3570	 65.42	0	3936029..3936748	-	239	121596006	-	Ajs_3716	-	hypothetical protein
3571	 70.05	0	3936924..3938519	-	531	121596007	-	Ajs_3717	-	glucose-methanol-choline oxidoreductase
3572	 64.19	0	3938632..3939480	+	282	121596008	-	Ajs_3718	-	3-hydroxybutyryl-CoA dehydrogenase
3573	 71.97	+1	3939501..3940292	+	263	121596009	-	Ajs_3719	-	2-dehydro-3-deoxyglucarate aldolase
3574	 67.78	0	3940759..3942018	+	419	121596010	-	Ajs_3720	-	hypothetical protein
3575	 73.46	+1	3942068..3943201	+	377	121596011	-	Ajs_3721	-	peptidase M48, Ste24p
3576	 63.16	0	3943658..3943828	-	56	121596012	-	Ajs_3722	-	hypothetical protein
3577	 68.95	0	3944072..3944989	+	305	121596013	-	Ajs_3723	-	cysteine synthase
3578	 67.98	0	3945126..3945965	+	279	121596014	-	Ajs_3724	-	endonuclease/exonuclease/phosphatase
3579	 69.54	0	3945965..3947182	+	405	121596015	-	Ajs_3725	-	cardiolipin synthase 2
3580	 71.54	+1	3947191..3948258	+	355	121596016	-	Ajs_3726	-	hypothetical protein
3581	 72.33	+1	3948345..3950126	+	593	121596017	-	Ajs_3727	-	FAD dependent oxidoreductase
3582	 68.90	0	3950138..3950764	-	208	121596018	-	Ajs_3728	-	hypothetical protein
3583	 68.70	0	3951689..3952621	-	310	121596019	-	Ajs_3730	-	electron transfer flavoprotein, alpha subunit
3584	 63.87	0	3952643..3953392	-	249	121596020	-	Ajs_3731	-	electron transfer flavoprotein beta-subunit
3585	 66.46	0	3953414..3954388	-	324	121596021	-	Ajs_3732	-	2-nitropropane dioxygenase, NPD
3586	 68.37	0	3954400..3955395	-	331	121596022	-	Ajs_3733	-	hypothetical protein
3587	 68.45	0	3955466..3956701	-	411	121596023	-	Ajs_3734	-	L-carnitine dehydratase/bile acid-inducible protein F
3588	 72.32	+1	3956737..3957567	-	276	121596024	-	Ajs_3735	-	enoyl-CoA hydratase
3589	 69.94	0	3957677..3958807	-	376	121596025	-	Ajs_3736	-	acyl-CoA dehydrogenase domain-containing protein
3590	 64.03	0	3958833..3960044	-	403	121596026	-	Ajs_3737	-	acyl-CoA dehydrogenase domain-containing protein
3591	 70.08	0	3960055..3961254	-	399	121596027	-	Ajs_3738	-	acetyl-CoA acetyltransferases
3592	 70.40	0	3961397..3963514	-	705	121596028	-	Ajs_3739	-	3-hydroxyacyl-CoA dehydrogenase, NAD-binding
3593	 68.48	0	3963647..3964585	+	312	121596029	-	Ajs_3740	-	LysR family transcriptional regulator
3594	 73.55	+1	3964599..3964961	-	120	121596030	-	Ajs_3741	-	hypothetical protein
3595	 65.19	0	3965056..3965934	-	292	121596031	-	Ajs_3742	-	heat shock protein HtpX
3596	 68.48	0	3966062..3966835	-	257	121596032	-	Ajs_3743	-	putative transmembrane protein
3597	 69.56	0	3966832..3967695	-	287	121596033	-	Ajs_3744	-	hypothetical protein
3598	 68.87	0	3967730..3968773	-	347	121596034	-	Ajs_3745	-	dihydroorotase
3599	 66.31	0	3968912..3969475	-	187	121596035	-	Ajs_3746	-	hypothetical protein
3600	 69.31	0	3969559..3975384	-	1941	121596036	-	Ajs_3747	-	UvrA family protein
3601	 66.22	0	3975543..3976655	+	370	121596037	-	Ajs_3748	-	extracellular ligand-binding receptor
3602	 66.49	0	3976790..3977914	+	374	121596038	-	Ajs_3749	-	extracellular ligand-binding receptor
3603	 58.22	-1	3978001..3978213	-	70	121596039	-	Ajs_3750	-	hypothetical protein
3604	 61.62	-1	3978311..3979321	-	336	121596040	-	Ajs_3751	-	porin
3605	 63.95	0	3979560..3981254	-	564	121596041	-	Ajs_3752	-	major facilitator superfamily transporter
3606	 70.95	0	3981701..3982354	-	217	121596042	-	Ajs_3753	-	DSBA oxidoreductase
3607	 63.16	0	3982351..3982635	-	94	121596043	-	Ajs_3754	-	hypothetical protein
3608	 69.33	0	3982632..3983120	-	162	121596044	-	Ajs_3755	-	YbaK/prolyl-tRNA synthetase associated region
3609	 68.69	0	3983234..3984967	+	577	121596045	-	Ajs_3756	-	diguanylate cyclase
3610	 66.23	0	3984982..3985896	-	304	121596046	-	Ajs_3757	-	hydroxymethylglutaryl-CoA lyase
3611	 68.84	0	3985925..3986845	-	306	121596047	-	Ajs_3758	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
3612	 68.00	0	3986884..3988902	-	672	121596048	-	Ajs_3759	-	3-methylcrotonoyl-CoA carboxylase, alpha subunit
3613	 69.72	0	3988903..3989622	-	239	121596049	-	Ajs_3760	-	putative transmembrane protein
3614	 69.09	0	3989629..3990411	-	260	121596050	-	Ajs_3761	-	enoyl-CoA hydratase
3615	 70.00	0	3990408..3990917	-	169	121596051	-	Ajs_3762	-	DinB family protein
3616	 67.23	0	3990928..3992532	-	534	121596052	-	Ajs_3763	-	propionyl-CoA carboxylase
3617	 67.65	0	3992547..3994283	-	578	121596053	-	Ajs_3764	-	acyl-CoA synthetase
3618	 70.26	0	3994429..3995514	+	361	121596054	-	Ajs_3765	-	AraC family transcriptional regulator
3619	 57.70	-1	3995893..3996873	-	326	121596055	-	Ajs_3766	-	transposase, IS4 family protein
3620	 67.56	0	3997634..3998302	+	222	121596056	-	Ajs_3767	-	glutathione S-transferase domain-containing protein
3621	 62.20	0	3998347..3999129	+	260	121596057	-	Ajs_3768	-	hypothetical protein
3622	 70.36	0	3999232..4000938	+	568	121596058	-	Ajs_3769	-	AMP-dependent synthetase and ligase
3623	 64.22	0	4001058..4001753	-	231	121596059	-	Ajs_3770	-	hypothetical protein
3624	 68.06	0	4002057..4002488	-	143	121596060	-	Ajs_3771	-	hypothetical protein
3625	 66.27	0	4002804..4004564	+	586	121596061	-	Ajs_3772	-	methyl-accepting chemotaxis sensory transducer
3626	 70.14	0	4004832..4005494	-	220	121596062	-	Ajs_3773	-	HAD family hydrolase
3627	 67.02	0	4005565..4006695	-	376	121596063	-	Ajs_3774	-	acyl-CoA dehydrogenase domain-containing protein
3628	 71.60	+1	4006745..4007413	-	222	121596064	-	Ajs_3775	-	short chain dehydrogenase
3629	 67.67	0	4007516..4008706	-	396	121596065	-	Ajs_3776	-	acetyl-CoA acetyltransferases
3630	 62.84	0	4008703..4010532	-	609	121596066	aceK	Ajs_3777	-	bifunctional isocitrate dehydrogenase kinase/phosphatase protein
3631	 64.56	0	4010570..4011232	-	220	121596067	-	Ajs_3778	-	carbonate dehydratase
3632	 61.80	0	4011288..4012478	-	396	121596068	-	Ajs_3779	-	isovaleryl-CoA dehydrogenase
3633	 56.93	-2	4012608..4013018	-	136	121596069	-	Ajs_3780	-	MerR family transcriptional regulator
3634	 62.10	0	4013322..4014548	-	408	121596070	-	Ajs_3782	-	transposase, mutator type
3635	 62.98	0	4014781..4015593	+	270	121596071	-	Ajs_3784	-	integrase catalytic subunit
3636	 62.85	0	4021542..4023428	+	628	121596072	-	Ajs_3785	-	ABC transporter related
3637	 66.31	0	4023438..4024550	-	370	121596073	-	Ajs_3786	-	response regulator receiver modulated CheB methylesterase
3638	 63.82	0	4024588..4025325	-	245	121596074	-	Ajs_3787	-	chemoreceptor glutamine deamidase CheD
3639	 65.21	0	4025365..4026258	-	297	121596075	-	Ajs_3788	-	MCP methyltransferase, CheR-type
3640	 62.99	0	4026307..4026795	-	162	121596076	-	Ajs_3789	-	CheW protein
3641	 67.14	0	4026829..4028961	-	710	121596077	-	Ajs_3790	-	CheA signal transduction histidine kinases
3642	 63.09	0	4029013..4029375	-	120	121596078	-	Ajs_3791	-	response regulator receiver protein
3643	 63.98	0	4029444..4029890	-	148	121596079	-	Ajs_3792	-	hypothetical protein
3644	 70.94	0	4030040..4031161	+	373	121596080	-	Ajs_3793	-	response regulator receiver sensor signal transduction histidine kinase
3645	 66.98	0	4031158..4031787	+	209	121596081	-	Ajs_3794	-	two component LuxR family transcriptional regulator
3646	 65.89	0	4031886..4032656	-	256	121596082	-	Ajs_3795	-	flagellar biosynthetic protein FliR
3647	 66.30	0	4032662..4032931	-	89	121596083	-	Ajs_3796	-	flagellar biosynthetic protein FliQ
3648	 67.06	0	4032942..4033697	-	251	121596084	fliP	Ajs_3797	-	flagellar biosynthesis protein FliP
3649	 72.49	+1	4033690..4034067	-	125	121596085	-	Ajs_3798	-	flagellar biosynthesis protein, FliO
3650	 66.22	0	4034060..4034509	-	149	121596086	-	Ajs_3799	-	flagellar motor switch protein FliN
3651	 65.07	0	4034499..4035503	-	334	121596087	-	Ajs_3800	-	flagellar motor switch protein FliM
3652	 67.89	0	4035519..4036091	-	190	121596088	-	Ajs_3801	-	flagellar basal body-associated protein FliL
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.