IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3485	 67.25	0	3833521..3835221	+	566	121595921	-	Ajs_3629	-	integral membrane sensor signal transduction histidine kinase
3486	 67.20	0	3835237..3836745	+	502	121595922	-	Ajs_3630	-	two component, sigma54 specific, Fis family transcriptional regulator
3487	 65.67	0	3836726..3837325	+	199	121595923	-	Ajs_3631	-	N-acetyl-anhydromuranmyl-L-alanine amidase
3488	 62.45	0	3837681..3840599	+	972	121595924	-	Ajs_3632	-	ribonucleotide-diphosphate reductase subunit alpha
3489	 58.94	-1	3840738..3841928	+	396	121595925	-	Ajs_3633	-	ribonucleotide-diphosphate reductase subunit beta
3490	 62.03	0	3842109..3842690	+	193	121595926	-	Ajs_3634	-	histone protein
3491	 62.21	0	3842788..3843684	-	298	121595927	-	Ajs_3635	-	ribokinase-like domain-containing protein
3492	 65.77	0	3843710..3845047	-	445	121595928	-	Ajs_3636	-	Zinc finger-domain-containing protein
3493	 66.22	0	3845097..3845990	-	297	121595929	-	Ajs_3637	-	50S ribosomal protein L11P methyltransferase
3494	 63.04	0	3846076..3847425	-	449	121595930	-	Ajs_3638	-	acetyl-CoA carboxylase, biotin carboxylase
3495	 64.09	0	3847539..3848003	-	154	121595931	-	Ajs_3639	-	biotin carboxyl carrier protein
3496	 66.50	0	3848114..3848701	-	195	121595932	-	Ajs_3640	-	redoxin domain-containing protein
3497	 66.01	0	3848698..3849309	-	203	121595933	-	Ajs_3641	-	hypothetical protein
3498	 69.33	0	3849526..3850950	+	474	121595934	-	Ajs_3642	-	UDP-N-acetylmuramate
3499	 67.95	0	3850999..3851310	-	103	121595935	-	Ajs_3643	-	hypothetical protein
3500	 66.13	0	3851405..3852523	-	372	121595936	-	Ajs_3644	-	phospho-2-dehydro-3-deoxyheptonate aldolase
3501	 71.58	+1	3852777..3853325	-	182	121595937	-	Ajs_3645	-	hypothetical protein
3502	 67.42	0	3853348..3854808	-	486	121595938	-	Ajs_3646	-	microcin-processing peptidase 2
3503	 67.01	0	3854870..3856042	-	390	121595939	-	Ajs_3647	-	rod shape-determining protein RodA
3504	 72.28	+1	3858544..3859131	+	195	121595940	-	Ajs_3649	-	hypothetical protein
3505	 72.84	+1	3859132..3860685	-	517	121595941	-	Ajs_3650	-	O-antigen polymerase
3506	 71.70	+1	3860734..3861210	-	158	121595942	-	Ajs_3651	-	cytochrome c, class I
3507	 72.07	+1	3861282..3861947	-	221	121595943	-	Ajs_3652	-	hypothetical protein
3508	 72.40	+1	3861975..3862706	-	243	121595944	-	Ajs_3653	-	ECF subfamily RNA polymerase sigma-24 factor
3509	 67.91	0	3862835..3864922	+	695	121595945	-	Ajs_3654	-	ribonuclease II
3510	 68.74	0	3864947..3865861	+	304	121595946	-	Ajs_3655	-	TonB family protein
3511	 73.50	+1	3865861..3866709	+	282	121595947	-	Ajs_3656	-	shikimate 5-dehydrogenase
3512	 70.12	0	3866713..3867435	+	240	121595948	-	Ajs_3657	-	monofunctional biosynthetic peptidoglycan transglycosylase
3513	 71.30	+1	3867515..3868075	+	186	121595949	-	Ajs_3658	-	crossover junction endodeoxyribonuclease RuvC
3514	 69.45	0	3868112..3869764	-	550	121595950	-	Ajs_3659	-	methyl-accepting chemotaxis sensory transducer
3515	 69.37	0	3870019..3871644	+	541	121595951	-	Ajs_3660	-	methyl-accepting chemotaxis sensory transducer
3516	 66.23	0	3871696..3873540	-	614	121595952	-	Ajs_3661	-	thiamine biosynthesis protein ThiC
3517	 56.50	-2	3873785..3873961	-	58	121595953	-	Ajs_3662	-	hypothetical protein
3518	 65.91	0	3873980..3874903	-	307	121595954	lpxC	Ajs_3663	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
3519	 66.17	0	3875067..3876863	+	598	121595955	-	Ajs_3664	-	methyl-accepting chemotaxis sensory transducer
3520	 68.29	0	3877005..3878234	-	409	121595956	-	Ajs_3665	-	cell division protein FtsZ
3521	 66.75	0	3878397..3879626	-	409	121595957	-	Ajs_3666	-	cell division protein FtsA
3522	 69.66	0	3879644..3880477	-	277	121595958	-	Ajs_3667	-	polypeptide-transport-associated domain-containing protein
3523	 67.37	0	3880474..3881472	-	332	121595959	-	Ajs_3668	-	D-alanine--D-alanine ligase
3524	 69.18	0	3881469..3882902	-	477	121595960	murC	Ajs_3669	-	UDP-N-acetylmuramate--L-alanine ligase
3525	 70.42	0	3882899..3884098	-	399	121595961	-	Ajs_3670	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
3526	 66.74	0	3884193..3885473	-	426	121595962	-	Ajs_3671	-	cell division protein FtsW
3527	 70.47	0	3885470..3886966	-	498	121595963	murD	Ajs_3672	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
3528	 63.36	0	3887359..3888537	-	392	121595964	-	Ajs_3673	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
3529	 70.74	0	3888528..3889976	-	482	121595965	-	Ajs_3674	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
3530	 70.98	0	3889973..3891478	-	501	121595966	-	Ajs_3675	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
3531	 66.09	0	3891475..3893223	-	582	121595967	-	Ajs_3676	-	peptidoglycan synthetase FtsI
3532	 68.65	0	3893220..3893522	-	100	121595968	-	Ajs_3677	-	cell division protein FtsL
3533	 66.45	0	3893632..3894558	-	308	121595969	-	Ajs_3678	-	S-adenosyl-methyltransferase MraW
3534	 65.50	0	3894568..3894996	-	142	121595970	-	Ajs_3679	-	cell division protein MraZ
3535	 65.92	0	3895262..3896602	-	446	121595971	hslU	Ajs_3680	-	ATP-dependent protease ATP-binding subunit
3536	 66.84	0	3896698..3897279	-	193	121595972	-	Ajs_3681	-	ATP-dependent protease peptidase subunit
3537	 69.43	0	3897337..3899145	-	602	121595973	-	Ajs_3682	-	hypothetical protein
3538	 65.96	0	3899199..3900044	-	281	121595974	-	Ajs_3683	-	TraR/DksA family transcriptional regulator
3539	 61.89	0	3900068..3901177	-	369	121595975	-	Ajs_3684	-	cobalamin synthesis protein, P47K
3540	 67.42	0	3901285..3902472	-	395	121595976	-	Ajs_3685	-	SAM-dependent methyltransferase
3541	 74.90	+1	3902564..3903535	-	323	121595977	-	Ajs_3686	-	tyrosine recombinase XerC
3542	 69.70	0	3903635..3904327	-	230	121595978	-	Ajs_3687	-	hypothetical protein
3543	 68.67	0	3904324..3905271	-	315	121595979	-	Ajs_3688	-	diaminopimelate epimerase
3544	 68.86	0	3905322..3905594	+	90	121595980	-	Ajs_3689	-	hypothetical protein
3545	 69.15	0	3905677..3905877	+	66	121595981	-	Ajs_3690	-	hypothetical protein
3546	 72.35	+1	3905912..3907618	+	568	121595982	-	Ajs_3691	-	beta-lactamase domain-containing protein
3547	 70.66	0	3907611..3908411	+	266	121595983	-	Ajs_3692	-	RNA-binding S4 domain-containing protein
3548	 68.67	0	3908593..3910386	+	597	121595984	-	Ajs_3693	-	YhhN family protein
3549	 68.53	0	3910391..3911461	-	356	121595985	ruvB	Ajs_3694	-	Holliday junction DNA helicase B
3550	 71.36	+1	3911686..3912324	+	212	121595986	-	Ajs_3695	-	hypothetical protein
3551	 71.95	+1	3912333..3914243	+	636	121595987	-	Ajs_3696	-	putative heat-shock chaperone protein
3552	 71.38	+1	3914254..3914847	+	197	121595988	-	Ajs_3697	-	NAD(P)H dehydrogenase (quinone)
3553	 72.80	+1	3914852..3917722	+	956	121595989	-	Ajs_3698	-	DnaK-related protein
3554	 70.52	0	3917987..3919438	-	483	121595990	-	Ajs_3699	-	endoproteinase Arg-C
3555	 66.14	0	3919477..3920049	-	190	121595991	-	Ajs_3700	-	Holliday junction DNA helicase RuvA
3556	 67.56	0	3920052..3921059	+	335	121595992	-	Ajs_3701	-	PhoH family protein
3557	 67.10	0	3921125..3921583	+	152	121595993	-	Ajs_3702	-	hypothetical protein
3558	 63.27	0	3921809..3922897	+	362	121595994	-	Ajs_3703	-	transposase, IS4 family protein
3559	 70.14	0	3923067..3923843	+	258	121595995	-	Ajs_3704	-	hypothetical protein
3560	 65.74	0	3923870..3925279	-	469	121595996	-	Ajs_3705	-	DEAD/DEAH box helicase domain-containing protein
3561	 71.61	+1	3925289..3925753	-	154	121595997	-	Ajs_3706	-	D-tyrosyl-tRNA deacylase
3562	 69.90	0	3925750..3926709	-	319	121595998	-	Ajs_3707	-	cation diffusion facilitator family transporter
3563	 68.88	0	3926730..3928943	+	737	121595999	-	Ajs_3708	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
3564	 68.22	0	3929005..3930486	+	493	121596000	-	Ajs_3709	-	AMP nucleosidase
3565	 74.44	+1	3930559..3931818	-	419	121596001	-	Ajs_3710	-	hypothetical protein
3566	 71.30	+1	3931958..3932929	+	323	121596002	-	Ajs_3711	-	ABC transporter related
3567	 65.80	0	3932931..3933740	+	269	121596003	-	Ajs_3712	-	ABC transporter
3568	 68.23	0	3934234..3935580	+	448	121596004	-	Ajs_3714	-	putative GAF sensor protein
3569	 67.82	0	3935601..3936032	-	143	121596005	-	Ajs_3715	-	hypothetical protein
3570	 65.42	0	3936029..3936748	-	239	121596006	-	Ajs_3716	-	hypothetical protein
3571	 70.05	0	3936924..3938519	-	531	121596007	-	Ajs_3717	-	glucose-methanol-choline oxidoreductase
3572	 64.19	0	3938632..3939480	+	282	121596008	-	Ajs_3718	-	3-hydroxybutyryl-CoA dehydrogenase
3573	 71.97	+1	3939501..3940292	+	263	121596009	-	Ajs_3719	-	2-dehydro-3-deoxyglucarate aldolase
3574	 67.78	0	3940759..3942018	+	419	121596010	-	Ajs_3720	-	hypothetical protein
3575	 73.46	+1	3942068..3943201	+	377	121596011	-	Ajs_3721	-	peptidase M48, Ste24p
3576	 63.16	0	3943658..3943828	-	56	121596012	-	Ajs_3722	-	hypothetical protein
3577	 68.95	0	3944072..3944989	+	305	121596013	-	Ajs_3723	-	cysteine synthase
3578	 67.98	0	3945126..3945965	+	279	121596014	-	Ajs_3724	-	endonuclease/exonuclease/phosphatase
3579	 69.54	0	3945965..3947182	+	405	121596015	-	Ajs_3725	-	cardiolipin synthase 2
3580	 71.54	+1	3947191..3948258	+	355	121596016	-	Ajs_3726	-	hypothetical protein
3581	 72.33	+1	3948345..3950126	+	593	121596017	-	Ajs_3727	-	FAD dependent oxidoreductase
3582	 68.90	0	3950138..3950764	-	208	121596018	-	Ajs_3728	-	hypothetical protein
3583	 68.70	0	3951689..3952621	-	310	121596019	-	Ajs_3730	-	electron transfer flavoprotein, alpha subunit
3584	 63.87	0	3952643..3953392	-	249	121596020	-	Ajs_3731	-	electron transfer flavoprotein beta-subunit
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.