IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3462	 60.77	-1	3806730..3809732	-	1000	121595898	-	Ajs_3606	-	HsdR family type I site-specific deoxyribonuclease
3463	 53.99	-2	3809732..3810922	-	396	121595899	-	Ajs_3607	-	restriction modification system, type I
3464	 60.63	-1	3810915..3812801	-	628	121595900	-	Ajs_3608	-	putative transcriptional regulator
3465	 62.34	0	3812794..3814320	-	508	121595901	-	Ajs_3609	-	N-6 DNA methylase
3466	 61.34	-1	3814317..3815819	-	500	121595902	-	Ajs_3610	-	N-6 DNA methylase
3467	 61.11	-1	3815816..3816013	-	65	121595903	-	Ajs_3611	-	hypothetical protein
3468	 61.42	-1	3816001..3816267	-	88	121595904	-	Ajs_3612	-	hypothetical protein
3469	 63.27	0	3816280..3817368	-	362	121595905	-	Ajs_3613	-	transposase, IS4 family protein
3470	 63.76	0	3817399..3818466	-	355	121595906	-	Ajs_3614	-	phage integrase family protein
3471	 60.69	-1	3818463..3819365	-	300	121595907	-	Ajs_3615	-	hypothetical protein
3472	 51.58	-2	3819720..3820508	-	262	121595908	-	Ajs_3616	-	hypothetical protein
3473	 59.93	-1	3820505..3821677	-	390	121595909	-	Ajs_3617	-	phage integrase family protein
3474	 65.57	0	3821896..3822990	-	364	121595910	-	Ajs_3618	-	GTP-binding protein YchF
3475	 70.57	0	3823115..3823984	-	289	121595911	-	Ajs_3619	-	MOSC domain-containing protein
3476	 75.00	+1	3824086..3825225	+	379	121595912	-	Ajs_3620	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
3477	 66.67	0	3825269..3825979	+	236	121595913	-	Ajs_3621	-	thiol:disulfide interchange protein DsbC
3478	 70.88	0	3826146..3827927	+	593	121595914	-	Ajs_3622	-	peptidase M61 domain-containing protein
3479	 64.51	0	3827924..3828757	+	277	121595915	-	Ajs_3623	-	short chain enoyl-CoA hydratase
3480	 70.15	0	3828954..3829412	+	152	121595916	-	Ajs_3624	-	hypothetical protein
3481	 64.59	0	3829550..3830896	+	448	121595917	-	Ajs_3625	-	tRNA-i(6)A37 thiotransferase enzyme MiaB
3482	 66.52	0	3831018..3832397	-	459	121595918	-	Ajs_3626	-	signal recognition particle subunit FFH/SRP54 (srp54)
3483	 70.29	0	3832489..3833289	+	266	121595919	-	Ajs_3627	-	cytochrome c assembly protein
3484	 69.26	0	3833286..3833516	+	76	121595920	-	Ajs_3628	-	hypothetical protein
3485	 67.25	0	3833521..3835221	+	566	121595921	-	Ajs_3629	-	integral membrane sensor signal transduction histidine kinase
3486	 67.20	0	3835237..3836745	+	502	121595922	-	Ajs_3630	-	two component, sigma54 specific, Fis family transcriptional regulator
3487	 65.67	0	3836726..3837325	+	199	121595923	-	Ajs_3631	-	N-acetyl-anhydromuranmyl-L-alanine amidase
3488	 62.45	0	3837681..3840599	+	972	121595924	-	Ajs_3632	-	ribonucleotide-diphosphate reductase subunit alpha
3489	 58.94	-1	3840738..3841928	+	396	121595925	-	Ajs_3633	-	ribonucleotide-diphosphate reductase subunit beta
3490	 62.03	0	3842109..3842690	+	193	121595926	-	Ajs_3634	-	histone protein
3491	 62.21	0	3842788..3843684	-	298	121595927	-	Ajs_3635	-	ribokinase-like domain-containing protein
3492	 65.77	0	3843710..3845047	-	445	121595928	-	Ajs_3636	-	Zinc finger-domain-containing protein
3493	 66.22	0	3845097..3845990	-	297	121595929	-	Ajs_3637	-	50S ribosomal protein L11P methyltransferase
3494	 63.04	0	3846076..3847425	-	449	121595930	-	Ajs_3638	-	acetyl-CoA carboxylase, biotin carboxylase
3495	 64.09	0	3847539..3848003	-	154	121595931	-	Ajs_3639	-	biotin carboxyl carrier protein
3496	 66.50	0	3848114..3848701	-	195	121595932	-	Ajs_3640	-	redoxin domain-containing protein
3497	 66.01	0	3848698..3849309	-	203	121595933	-	Ajs_3641	-	hypothetical protein
3498	 69.33	0	3849526..3850950	+	474	121595934	-	Ajs_3642	-	UDP-N-acetylmuramate
3499	 67.95	0	3850999..3851310	-	103	121595935	-	Ajs_3643	-	hypothetical protein
3500	 66.13	0	3851405..3852523	-	372	121595936	-	Ajs_3644	-	phospho-2-dehydro-3-deoxyheptonate aldolase
3501	 71.58	+1	3852777..3853325	-	182	121595937	-	Ajs_3645	-	hypothetical protein
3502	 67.42	0	3853348..3854808	-	486	121595938	-	Ajs_3646	-	microcin-processing peptidase 2
3503	 67.01	0	3854870..3856042	-	390	121595939	-	Ajs_3647	-	rod shape-determining protein RodA
3504	 72.28	+1	3858544..3859131	+	195	121595940	-	Ajs_3649	-	hypothetical protein
3505	 72.84	+1	3859132..3860685	-	517	121595941	-	Ajs_3650	-	O-antigen polymerase
3506	 71.70	+1	3860734..3861210	-	158	121595942	-	Ajs_3651	-	cytochrome c, class I
3507	 72.07	+1	3861282..3861947	-	221	121595943	-	Ajs_3652	-	hypothetical protein
3508	 72.40	+1	3861975..3862706	-	243	121595944	-	Ajs_3653	-	ECF subfamily RNA polymerase sigma-24 factor
3509	 67.91	0	3862835..3864922	+	695	121595945	-	Ajs_3654	-	ribonuclease II
3510	 68.74	0	3864947..3865861	+	304	121595946	-	Ajs_3655	-	TonB family protein
3511	 73.50	+1	3865861..3866709	+	282	121595947	-	Ajs_3656	-	shikimate 5-dehydrogenase
3512	 70.12	0	3866713..3867435	+	240	121595948	-	Ajs_3657	-	monofunctional biosynthetic peptidoglycan transglycosylase
3513	 71.30	+1	3867515..3868075	+	186	121595949	-	Ajs_3658	-	crossover junction endodeoxyribonuclease RuvC
3514	 69.45	0	3868112..3869764	-	550	121595950	-	Ajs_3659	-	methyl-accepting chemotaxis sensory transducer
3515	 69.37	0	3870019..3871644	+	541	121595951	-	Ajs_3660	-	methyl-accepting chemotaxis sensory transducer
3516	 66.23	0	3871696..3873540	-	614	121595952	-	Ajs_3661	-	thiamine biosynthesis protein ThiC
3517	 56.50	-2	3873785..3873961	-	58	121595953	-	Ajs_3662	-	hypothetical protein
3518	 65.91	0	3873980..3874903	-	307	121595954	lpxC	Ajs_3663	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
3519	 66.17	0	3875067..3876863	+	598	121595955	-	Ajs_3664	-	methyl-accepting chemotaxis sensory transducer
3520	 68.29	0	3877005..3878234	-	409	121595956	-	Ajs_3665	-	cell division protein FtsZ
3521	 66.75	0	3878397..3879626	-	409	121595957	-	Ajs_3666	-	cell division protein FtsA
3522	 69.66	0	3879644..3880477	-	277	121595958	-	Ajs_3667	-	polypeptide-transport-associated domain-containing protein
3523	 67.37	0	3880474..3881472	-	332	121595959	-	Ajs_3668	-	D-alanine--D-alanine ligase
3524	 69.18	0	3881469..3882902	-	477	121595960	murC	Ajs_3669	-	UDP-N-acetylmuramate--L-alanine ligase
3525	 70.42	0	3882899..3884098	-	399	121595961	-	Ajs_3670	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
3526	 66.74	0	3884193..3885473	-	426	121595962	-	Ajs_3671	-	cell division protein FtsW
3527	 70.47	0	3885470..3886966	-	498	121595963	murD	Ajs_3672	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
3528	 63.36	0	3887359..3888537	-	392	121595964	-	Ajs_3673	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
3529	 70.74	0	3888528..3889976	-	482	121595965	-	Ajs_3674	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
3530	 70.98	0	3889973..3891478	-	501	121595966	-	Ajs_3675	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
3531	 66.09	0	3891475..3893223	-	582	121595967	-	Ajs_3676	-	peptidoglycan synthetase FtsI
3532	 68.65	0	3893220..3893522	-	100	121595968	-	Ajs_3677	-	cell division protein FtsL
3533	 66.45	0	3893632..3894558	-	308	121595969	-	Ajs_3678	-	S-adenosyl-methyltransferase MraW
3534	 65.50	0	3894568..3894996	-	142	121595970	-	Ajs_3679	-	cell division protein MraZ
3535	 65.92	0	3895262..3896602	-	446	121595971	hslU	Ajs_3680	-	ATP-dependent protease ATP-binding subunit
3536	 66.84	0	3896698..3897279	-	193	121595972	-	Ajs_3681	-	ATP-dependent protease peptidase subunit
3537	 69.43	0	3897337..3899145	-	602	121595973	-	Ajs_3682	-	hypothetical protein
3538	 65.96	0	3899199..3900044	-	281	121595974	-	Ajs_3683	-	TraR/DksA family transcriptional regulator
3539	 61.89	0	3900068..3901177	-	369	121595975	-	Ajs_3684	-	cobalamin synthesis protein, P47K
3540	 67.42	0	3901285..3902472	-	395	121595976	-	Ajs_3685	-	SAM-dependent methyltransferase
3541	 74.90	+1	3902564..3903535	-	323	121595977	-	Ajs_3686	-	tyrosine recombinase XerC
3542	 69.70	0	3903635..3904327	-	230	121595978	-	Ajs_3687	-	hypothetical protein
3543	 68.67	0	3904324..3905271	-	315	121595979	-	Ajs_3688	-	diaminopimelate epimerase
3544	 68.86	0	3905322..3905594	+	90	121595980	-	Ajs_3689	-	hypothetical protein
3545	 69.15	0	3905677..3905877	+	66	121595981	-	Ajs_3690	-	hypothetical protein
3546	 72.35	+1	3905912..3907618	+	568	121595982	-	Ajs_3691	-	beta-lactamase domain-containing protein
3547	 70.66	0	3907611..3908411	+	266	121595983	-	Ajs_3692	-	RNA-binding S4 domain-containing protein
3548	 68.67	0	3908593..3910386	+	597	121595984	-	Ajs_3693	-	YhhN family protein
3549	 68.53	0	3910391..3911461	-	356	121595985	ruvB	Ajs_3694	-	Holliday junction DNA helicase B
3550	 71.36	+1	3911686..3912324	+	212	121595986	-	Ajs_3695	-	hypothetical protein
3551	 71.95	+1	3912333..3914243	+	636	121595987	-	Ajs_3696	-	putative heat-shock chaperone protein
3552	 71.38	+1	3914254..3914847	+	197	121595988	-	Ajs_3697	-	NAD(P)H dehydrogenase (quinone)
3553	 72.80	+1	3914852..3917722	+	956	121595989	-	Ajs_3698	-	DnaK-related protein
3554	 70.52	0	3917987..3919438	-	483	121595990	-	Ajs_3699	-	endoproteinase Arg-C
3555	 66.14	0	3919477..3920049	-	190	121595991	-	Ajs_3700	-	Holliday junction DNA helicase RuvA
3556	 67.56	0	3920052..3921059	+	335	121595992	-	Ajs_3701	-	PhoH family protein
3557	 67.10	0	3921125..3921583	+	152	121595993	-	Ajs_3702	-	hypothetical protein
3558	 63.27	0	3921809..3922897	+	362	121595994	-	Ajs_3703	-	transposase, IS4 family protein
3559	 70.14	0	3923067..3923843	+	258	121595995	-	Ajs_3704	-	hypothetical protein
3560	 65.74	0	3923870..3925279	-	469	121595996	-	Ajs_3705	-	DEAD/DEAH box helicase domain-containing protein
3561	 71.61	+1	3925289..3925753	-	154	121595997	-	Ajs_3706	-	D-tyrosyl-tRNA deacylase
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.