IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3429	 65.33	0	3765839..3766438	-	199	121595865	-	Ajs_3573	-	hypothetical protein
3430	 66.17	0	3766565..3772645	-	2026	121595866	-	Ajs_3574	-	CheA signal transduction histidine kinases
3431	 64.72	0	3772692..3774956	-	754	121595867	-	Ajs_3575	-	methyl-accepting chemotaxis sensory transducer
3432	 65.15	0	3774978..3775505	-	175	121595868	-	Ajs_3576	-	putative CheW protein
3433	 57.92	-1	3775522..3775887	-	121	121595869	-	Ajs_3577	-	response regulator receiver protein
3434	 53.44	-2	3775899..3776291	-	130	121595870	-	Ajs_3578	-	response regulator receiver protein
3435	 58.17	-1	3776343..3776495	-	50	121595871	-	Ajs_3579	-	rubredoxin-type Fe(Cys)4 protein
3436	 64.87	0	3776611..3777555	+	314	121595872	-	Ajs_3580	-	phosphomethylpyrimidine kinase type-1
3437	 68.58	0	3777539..3778843	+	434	121595873	-	Ajs_3581	-	glutamate-1-semialdehyde 2,1-aminomutase
3438	 69.85	0	3778933..3780786	+	617	121595874	-	Ajs_3582	-	alkaline phosphatase
3439	 74.24	+1	3780880..3781341	-	153	121595875	-	Ajs_3583	-	cytochrome c, class I
3440	 67.73	0	3781361..3782962	-	533	121595876	-	Ajs_3584	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
3441	 63.25	0	3783045..3783278	-	77	121595877	-	Ajs_3585	-	DNA-binding protein Fis
3442	 70.24	0	3783259..3784320	-	353	121595878	-	Ajs_3586	-	nifR3 family TIM-barrel protein
3443	 70.28	0	3784415..3785023	+	202	121595879	-	Ajs_3587	-	hypothetical protein
3444	 63.78	0	3785361..3786536	-	391	121595880	-	Ajs_3588	-	HipA domain-containing protein
3445	 60.90	-1	3786581..3786892	-	103	121595881	-	Ajs_3589	-	helix-turn-helix domain-containing protein
3446	 60.00	-1	3787037..3787276	-	79	121595882	-	Ajs_3590	-	XRE family transcriptional regulator
3447	 62.16	0	3787420..3788085	+	221	121595883	-	Ajs_3591	-	hypothetical protein
3448	 59.12	-1	3788103..3788831	+	242	121595884	-	Ajs_3592	-	hypothetical protein
3449	 69.51	0	3788896..3789633	-	245	121595885	-	Ajs_3593	-	IstB ATP binding domain-containing protein
3450	 68.74	0	3789670..3791214	-	514	121595886	-	Ajs_3594	-	integrase catalytic subunit
3451	 60.92	-1	3791300..3791821	+	173	121595887	-	Ajs_3595	-	hypothetical protein
3452	 62.05	0	3791818..3792294	+	158	121595888	-	Ajs_3596	-	hypothetical protein
3453	 61.35	-1	3792281..3792562	+	93	121595889	-	Ajs_3597	-	hypothetical protein
3454	 62.16	0	3792543..3794117	-	524	121595890	-	Ajs_3598	-	ATPase central domain-containing protein
3455	 61.34	-1	3794943..3795806	-	287	121595891	-	Ajs_3599	-	hypothetical protein
3456	 62.06	0	3795809..3798562	-	917	121595892	-	Ajs_3600	-	hypothetical protein
3457	 63.25	0	3798562..3799176	-	204	121595893	-	Ajs_3601	-	hypothetical protein
3458	 62.70	0	3799173..3800432	-	419	121595894	-	Ajs_3602	-	hypothetical protein
3459	 60.07	-1	3800846..3802558	-	570	121595895	-	Ajs_3603	-	hypothetical protein
3460	 62.33	0	3802582..3803850	-	422	121595896	-	Ajs_3604	-	putative transcriptional regulator
3461	 61.75	-1	3803852..3806719	-	955	121595897	-	Ajs_3605	-	SMC domain-containing protein
3462	 60.77	-1	3806730..3809732	-	1000	121595898	-	Ajs_3606	-	HsdR family type I site-specific deoxyribonuclease
3463	 53.99	-2	3809732..3810922	-	396	121595899	-	Ajs_3607	-	restriction modification system, type I
3464	 60.63	-1	3810915..3812801	-	628	121595900	-	Ajs_3608	-	putative transcriptional regulator
3465	 62.34	0	3812794..3814320	-	508	121595901	-	Ajs_3609	-	N-6 DNA methylase
3466	 61.34	-1	3814317..3815819	-	500	121595902	-	Ajs_3610	-	N-6 DNA methylase
3467	 61.11	-1	3815816..3816013	-	65	121595903	-	Ajs_3611	-	hypothetical protein
3468	 61.42	-1	3816001..3816267	-	88	121595904	-	Ajs_3612	-	hypothetical protein
3469	 63.27	0	3816280..3817368	-	362	121595905	-	Ajs_3613	-	transposase, IS4 family protein
3470	 63.76	0	3817399..3818466	-	355	121595906	-	Ajs_3614	-	phage integrase family protein
3471	 60.69	-1	3818463..3819365	-	300	121595907	-	Ajs_3615	-	hypothetical protein
3472	 51.58	-2	3819720..3820508	-	262	121595908	-	Ajs_3616	-	hypothetical protein
3473	 59.93	-1	3820505..3821677	-	390	121595909	-	Ajs_3617	-	phage integrase family protein
3474	 65.57	0	3821896..3822990	-	364	121595910	-	Ajs_3618	-	GTP-binding protein YchF
3475	 70.57	0	3823115..3823984	-	289	121595911	-	Ajs_3619	-	MOSC domain-containing protein
3476	 75.00	+1	3824086..3825225	+	379	121595912	-	Ajs_3620	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
3477	 66.67	0	3825269..3825979	+	236	121595913	-	Ajs_3621	-	thiol:disulfide interchange protein DsbC
3478	 70.88	0	3826146..3827927	+	593	121595914	-	Ajs_3622	-	peptidase M61 domain-containing protein
3479	 64.51	0	3827924..3828757	+	277	121595915	-	Ajs_3623	-	short chain enoyl-CoA hydratase
3480	 70.15	0	3828954..3829412	+	152	121595916	-	Ajs_3624	-	hypothetical protein
3481	 64.59	0	3829550..3830896	+	448	121595917	-	Ajs_3625	-	tRNA-i(6)A37 thiotransferase enzyme MiaB
3482	 66.52	0	3831018..3832397	-	459	121595918	-	Ajs_3626	-	signal recognition particle subunit FFH/SRP54 (srp54)
3483	 70.29	0	3832489..3833289	+	266	121595919	-	Ajs_3627	-	cytochrome c assembly protein
3484	 69.26	0	3833286..3833516	+	76	121595920	-	Ajs_3628	-	hypothetical protein
3485	 67.25	0	3833521..3835221	+	566	121595921	-	Ajs_3629	-	integral membrane sensor signal transduction histidine kinase
3486	 67.20	0	3835237..3836745	+	502	121595922	-	Ajs_3630	-	two component, sigma54 specific, Fis family transcriptional regulator
3487	 65.67	0	3836726..3837325	+	199	121595923	-	Ajs_3631	-	N-acetyl-anhydromuranmyl-L-alanine amidase
3488	 62.45	0	3837681..3840599	+	972	121595924	-	Ajs_3632	-	ribonucleotide-diphosphate reductase subunit alpha
3489	 58.94	-1	3840738..3841928	+	396	121595925	-	Ajs_3633	-	ribonucleotide-diphosphate reductase subunit beta
3490	 62.03	0	3842109..3842690	+	193	121595926	-	Ajs_3634	-	histone protein
3491	 62.21	0	3842788..3843684	-	298	121595927	-	Ajs_3635	-	ribokinase-like domain-containing protein
3492	 65.77	0	3843710..3845047	-	445	121595928	-	Ajs_3636	-	Zinc finger-domain-containing protein
3493	 66.22	0	3845097..3845990	-	297	121595929	-	Ajs_3637	-	50S ribosomal protein L11P methyltransferase
3494	 63.04	0	3846076..3847425	-	449	121595930	-	Ajs_3638	-	acetyl-CoA carboxylase, biotin carboxylase
3495	 64.09	0	3847539..3848003	-	154	121595931	-	Ajs_3639	-	biotin carboxyl carrier protein
3496	 66.50	0	3848114..3848701	-	195	121595932	-	Ajs_3640	-	redoxin domain-containing protein
3497	 66.01	0	3848698..3849309	-	203	121595933	-	Ajs_3641	-	hypothetical protein
3498	 69.33	0	3849526..3850950	+	474	121595934	-	Ajs_3642	-	UDP-N-acetylmuramate
3499	 67.95	0	3850999..3851310	-	103	121595935	-	Ajs_3643	-	hypothetical protein
3500	 66.13	0	3851405..3852523	-	372	121595936	-	Ajs_3644	-	phospho-2-dehydro-3-deoxyheptonate aldolase
3501	 71.58	+1	3852777..3853325	-	182	121595937	-	Ajs_3645	-	hypothetical protein
3502	 67.42	0	3853348..3854808	-	486	121595938	-	Ajs_3646	-	microcin-processing peptidase 2
3503	 67.01	0	3854870..3856042	-	390	121595939	-	Ajs_3647	-	rod shape-determining protein RodA
3504	 72.28	+1	3858544..3859131	+	195	121595940	-	Ajs_3649	-	hypothetical protein
3505	 72.84	+1	3859132..3860685	-	517	121595941	-	Ajs_3650	-	O-antigen polymerase
3506	 71.70	+1	3860734..3861210	-	158	121595942	-	Ajs_3651	-	cytochrome c, class I
3507	 72.07	+1	3861282..3861947	-	221	121595943	-	Ajs_3652	-	hypothetical protein
3508	 72.40	+1	3861975..3862706	-	243	121595944	-	Ajs_3653	-	ECF subfamily RNA polymerase sigma-24 factor
3509	 67.91	0	3862835..3864922	+	695	121595945	-	Ajs_3654	-	ribonuclease II
3510	 68.74	0	3864947..3865861	+	304	121595946	-	Ajs_3655	-	TonB family protein
3511	 73.50	+1	3865861..3866709	+	282	121595947	-	Ajs_3656	-	shikimate 5-dehydrogenase
3512	 70.12	0	3866713..3867435	+	240	121595948	-	Ajs_3657	-	monofunctional biosynthetic peptidoglycan transglycosylase
3513	 71.30	+1	3867515..3868075	+	186	121595949	-	Ajs_3658	-	crossover junction endodeoxyribonuclease RuvC
3514	 69.45	0	3868112..3869764	-	550	121595950	-	Ajs_3659	-	methyl-accepting chemotaxis sensory transducer
3515	 69.37	0	3870019..3871644	+	541	121595951	-	Ajs_3660	-	methyl-accepting chemotaxis sensory transducer
3516	 66.23	0	3871696..3873540	-	614	121595952	-	Ajs_3661	-	thiamine biosynthesis protein ThiC
3517	 56.50	-2	3873785..3873961	-	58	121595953	-	Ajs_3662	-	hypothetical protein
3518	 65.91	0	3873980..3874903	-	307	121595954	lpxC	Ajs_3663	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
3519	 66.17	0	3875067..3876863	+	598	121595955	-	Ajs_3664	-	methyl-accepting chemotaxis sensory transducer
3520	 68.29	0	3877005..3878234	-	409	121595956	-	Ajs_3665	-	cell division protein FtsZ
3521	 66.75	0	3878397..3879626	-	409	121595957	-	Ajs_3666	-	cell division protein FtsA
3522	 69.66	0	3879644..3880477	-	277	121595958	-	Ajs_3667	-	polypeptide-transport-associated domain-containing protein
3523	 67.37	0	3880474..3881472	-	332	121595959	-	Ajs_3668	-	D-alanine--D-alanine ligase
3524	 69.18	0	3881469..3882902	-	477	121595960	murC	Ajs_3669	-	UDP-N-acetylmuramate--L-alanine ligase
3525	 70.42	0	3882899..3884098	-	399	121595961	-	Ajs_3670	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
3526	 66.74	0	3884193..3885473	-	426	121595962	-	Ajs_3671	-	cell division protein FtsW
3527	 70.47	0	3885470..3886966	-	498	121595963	murD	Ajs_3672	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
3528	 63.36	0	3887359..3888537	-	392	121595964	-	Ajs_3673	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.