IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3354	 68.18	0	3693936..3695060	-	374	121595790	-	Ajs_3497	-	quinolinate synthetase
3355	 70.02	0	3695140..3696063	-	307	121595791	-	Ajs_3498	-	nicotinate-nucleotide pyrophosphorylase [carboxylating]
3356	 71.32	+1	3696084..3696965	+	293	121595792	-	Ajs_3499	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
3357	 70.11	0	3696982..3697851	+	289	121595793	-	Ajs_3500	-	pantothenate synthetase
3358	 70.29	0	3698162..3699154	-	330	121595794	-	Ajs_3501	-	glycerol-3-phosphate dehydrogenase (NAD(P)(+))
3359	 64.02	0	3699227..3699679	-	150	121595795	-	Ajs_3502	-	preprotein translocase subunit SecB
3360	 65.12	0	3699781..3700038	-	85	121595796	-	Ajs_3503	-	glutaredoxin 3
3361	 67.40	0	3700088..3700495	-	135	121595797	-	Ajs_3504	-	rhodanese domain-containing protein
3362	 67.61	0	3700569..3701312	+	247	121595798	-	Ajs_3505	-	phosphoglycerate mutase
3363	 64.93	0	3701427..3702863	+	478	121595799	-	Ajs_3506	-	C-terminal processing peptidase-3
3364	 69.15	0	3702931..3703695	+	254	121595800	-	Ajs_3507	-	UBA/THIF-type NAD/FAD binding protein
3365	 62.29	0	3703804..3704214	+	136	121595801	-	Ajs_3508	-	response regulator receiver protein
3366	 61.11	-1	3704333..3705052	-	239	121595802	-	Ajs_3509	-	two component LuxR family transcriptional regulator
3367	 66.07	0	3705119..3706462	+	447	121595803	-	Ajs_3510	-	multi-sensor signal transduction histidine kinase
3368	 57.58	-1	3706628..3706792	+	54	121595804	-	Ajs_3511	-	hypothetical protein
3369	 66.16	0	3706848..3707240	+	130	121595805	-	Ajs_3512	-	hypothetical protein
3370	 65.02	0	3707263..3707808	+	181	121595806	-	Ajs_3513	-	Ferritin, Dps family protein
3371	 62.86	0	3707908..3708222	+	104	121595807	-	Ajs_3514	-	transport-associated
3372	 69.03	0	3708313..3709413	+	366	121595808	-	Ajs_3515	-	hypothetical protein
3373	 67.07	0	3709414..3709911	-	165	121595809	-	Ajs_3516	-	pantetheine-phosphate adenylyltransferase
3374	 74.04	+1	3710057..3710680	-	207	121595810	-	Ajs_3517	-	putative methyltransferase
3375	 70.14	0	3710677..3712059	-	460	121595811	-	Ajs_3518	-	peptidase M16 domain-containing protein
3376	 71.00	0	3712075..3713529	-	484	121595812	-	Ajs_3519	-	peptidase M16 domain-containing protein
3377	 69.45	0	3713559..3714707	+	382	121595813	-	Ajs_3520	-	signal recognition particle-docking protein FtsY
3378	 69.70	0	3714758..3715120	-	120	121595814	-	Ajs_3521	-	CutA1 divalent ion tolerance protein
3379	 64.60	0	3715281..3716246	+	321	121595815	-	Ajs_3522	-	RNA polymerase, sigma 32 subunit, RpoH
3380	 72.30	+1	3716374..3717384	+	336	121595816	-	Ajs_3523	-	hypothetical protein
3381	 74.07	+1	3717613..3718395	+	260	121595817	-	Ajs_3524	-	cyclic nucleotide-binding protein
3382	 70.89	0	3718417..3720240	-	607	121595818	-	Ajs_3525	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
3383	 65.20	0	3720456..3721067	-	203	121595819	-	Ajs_3526	-	electron transport protein SCO1/SenC
3384	 66.78	0	3721077..3721997	-	306	121595820	-	Ajs_3527	-	protoheme IX farnesyltransferase
3385	 72.29	+1	3721994..3723184	-	396	121595821	-	Ajs_3528	-	cytochrome oxidase assembly
3386	 71.60	+1	3723190..3723939	-	249	121595822	-	Ajs_3529	-	hypothetical protein
3387	 70.66	0	3723881..3724657	-	258	121595823	-	Ajs_3530	-	putative transmembrane cytochrome oxidase
3388	 65.38	0	3724664..3724897	+	77	121595824	-	Ajs_3531	-	putative transmembrane protein
3389	 64.85	0	3725075..3725956	-	293	121595825	-	Ajs_3532	-	cytochrome c oxidase, subunit III
3390	 63.33	0	3726015..3726224	-	69	121595826	-	Ajs_3533	-	hypothetical protein
3391	 66.34	0	3726221..3726841	-	206	121595827	-	Ajs_3534	-	cytochrome C oxidase assembly protein
3392	 57.66	-1	3726857..3726967	-	36	121595828	-	Ajs_3535	-	hypothetical protein
3393	 63.30	0	3726985..3728619	-	544	121595829	-	Ajs_3536	-	cytochrome-c oxidase
3394	 64.44	0	3728652..3729821	-	389	121595830	-	Ajs_3537	-	cytochrome c oxidase, subunit II
3395	 58.50	-1	3729913..3730206	+	97	121595831	-	Ajs_3538	-	hypothetical protein
3396	 70.19	0	3730245..3731153	-	302	121595832	-	Ajs_3539	-	biotin synthesis protein BioC
3397	 74.49	+1	3731189..3731917	+	242	121595833	-	Ajs_3540	-	ComF family protein
3398	 67.54	0	3731927..3732496	+	189	121595834	-	Ajs_3541	-	tRNA/rRNA methyltransferase (SpoU)
3399	 69.68	0	3732526..3732990	-	154	121595835	-	Ajs_3542	-	dehydratase
3400	 70.53	0	3733073..3733693	-	206	121595836	-	Ajs_3543	-	cobyrinic acid a,c-diamide synthase
3401	 68.23	0	3733841..3734479	-	212	121595837	-	Ajs_3544	-	lysine exporter protein LysE/YggA
3402	 68.90	0	3734767..3736734	+	655	121595838	-	Ajs_3545	-	potassium efflux system protein
3403	 67.67	0	3736759..3737751	-	330	121595839	-	Ajs_3546	-	hypothetical protein
3404	 71.54	+1	3737840..3738640	-	266	121595840	-	Ajs_3547	-	3-oxoadipate enol-lactonase
3405	 70.63	0	3738668..3739879	-	403	121595841	-	Ajs_3548	-	beta-ketoadipyl CoA thiolase
3406	 67.43	0	3739955..3740608	-	217	121595842	-	Ajs_3549	-	butyryl-CoA:acetate CoA transferase
3407	 66.38	0	3740636..3741331	-	231	121595843	-	Ajs_3550	-	3-oxoacid CoA-transferase, A subunit
3408	 68.03	0	3741447..3742250	+	267	121595844	-	Ajs_3551	-	IclR family transcriptional regulator
3409	 68.64	0	3742668..3743123	+	151	121595845	-	Ajs_3553	-	hypothetical protein
3410	 71.65	+1	3743084..3743986	-	300	121595846	-	Ajs_3554	-	UspA domain-containing protein
3411	 63.18	0	3744447..3745106	-	219	121595847	-	Ajs_3555	-	cytochrome c, class I
3412	 61.92	0	3745215..3746057	+	280	121595848	-	Ajs_3556	-	ATPase central domain-containing protein
3413	 69.30	0	3746071..3746298	+	75	121595849	-	Ajs_3557	-	hypothetical protein
3414	 68.66	0	3746316..3746918	+	200	121595850	-	Ajs_3558	-	GCN5-related N-acetyltransferase
3415	 63.22	0	3746937..3748124	+	395	121595851	-	Ajs_3559	-	hypothetical protein
3416	 71.86	+1	3748130..3750034	+	634	121595852	-	Ajs_3560	-	surface antigen (D15)
3417	 76.13	+2	3750142..3754284	+	1380	121595853	-	Ajs_3561	-	hypothetical protein
3418	 73.83	+1	3754493..3754855	-	120	121595854	-	Ajs_3562	-	hypothetical protein
3419	 73.22	+1	3755146..3756549	-	467	121595855	-	Ajs_3563	-	cardiolipin synthetase 2
3420	 71.43	+1	3756880..3757257	-	125	121595856	-	Ajs_3564	-	arsenate reductase
3421	 73.00	+1	3757305..3758963	-	552	121595857	-	Ajs_3565	-	binding-protein-dependent transport systems inner membrane component
3422	 70.19	0	3759183..3760259	+	358	121595858	-	Ajs_3566	-	ABC transporter related
3423	 66.59	0	3760303..3761529	-	408	121595859	-	Ajs_3567	-	hypothetical protein
3424	 71.52	+1	3761660..3762400	-	246	121595860	-	Ajs_3568	-	lyso-ornithine lipid acyltransferase
3425	 71.30	+1	3762420..3763715	-	431	121595861	-	Ajs_3569	-	dihydroorotase
3426	 64.59	0	3763928..3764890	-	320	121595862	pyrB	Ajs_3570	-	aspartate carbamoyltransferase catalytic subunit
3427	 70.60	0	3764893..3765426	-	177	121595863	-	Ajs_3571	-	phosphoribosyltransferase
3428	 69.76	0	3765423..3765842	-	139	121595864	-	Ajs_3572	-	Holliday junction resolvase YqgF
3429	 65.33	0	3765839..3766438	-	199	121595865	-	Ajs_3573	-	hypothetical protein
3430	 66.17	0	3766565..3772645	-	2026	121595866	-	Ajs_3574	-	CheA signal transduction histidine kinases
3431	 64.72	0	3772692..3774956	-	754	121595867	-	Ajs_3575	-	methyl-accepting chemotaxis sensory transducer
3432	 65.15	0	3774978..3775505	-	175	121595868	-	Ajs_3576	-	putative CheW protein
3433	 57.92	-1	3775522..3775887	-	121	121595869	-	Ajs_3577	-	response regulator receiver protein
3434	 53.44	-2	3775899..3776291	-	130	121595870	-	Ajs_3578	-	response regulator receiver protein
3435	 58.17	-1	3776343..3776495	-	50	121595871	-	Ajs_3579	-	rubredoxin-type Fe(Cys)4 protein
3436	 64.87	0	3776611..3777555	+	314	121595872	-	Ajs_3580	-	phosphomethylpyrimidine kinase type-1
3437	 68.58	0	3777539..3778843	+	434	121595873	-	Ajs_3581	-	glutamate-1-semialdehyde 2,1-aminomutase
3438	 69.85	0	3778933..3780786	+	617	121595874	-	Ajs_3582	-	alkaline phosphatase
3439	 74.24	+1	3780880..3781341	-	153	121595875	-	Ajs_3583	-	cytochrome c, class I
3440	 67.73	0	3781361..3782962	-	533	121595876	-	Ajs_3584	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
3441	 63.25	0	3783045..3783278	-	77	121595877	-	Ajs_3585	-	DNA-binding protein Fis
3442	 70.24	0	3783259..3784320	-	353	121595878	-	Ajs_3586	-	nifR3 family TIM-barrel protein
3443	 70.28	0	3784415..3785023	+	202	121595879	-	Ajs_3587	-	hypothetical protein
3444	 63.78	0	3785361..3786536	-	391	121595880	-	Ajs_3588	-	HipA domain-containing protein
3445	 60.90	-1	3786581..3786892	-	103	121595881	-	Ajs_3589	-	helix-turn-helix domain-containing protein
3446	 60.00	-1	3787037..3787276	-	79	121595882	-	Ajs_3590	-	XRE family transcriptional regulator
3447	 62.16	0	3787420..3788085	+	221	121595883	-	Ajs_3591	-	hypothetical protein
3448	 59.12	-1	3788103..3788831	+	242	121595884	-	Ajs_3592	-	hypothetical protein
3449	 69.51	0	3788896..3789633	-	245	121595885	-	Ajs_3593	-	IstB ATP binding domain-containing protein
3450	 68.74	0	3789670..3791214	-	514	121595886	-	Ajs_3594	-	integrase catalytic subunit
3451	 60.92	-1	3791300..3791821	+	173	121595887	-	Ajs_3595	-	hypothetical protein
3452	 62.05	0	3791818..3792294	+	158	121595888	-	Ajs_3596	-	hypothetical protein
3453	 61.35	-1	3792281..3792562	+	93	121595889	-	Ajs_3597	-	hypothetical protein
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.