IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3220	 66.35	0	3546025..3546654	-	209	121595656	-	Ajs_3354	-	16S rRNA processing protein RimM
3221	 65.48	0	3546686..3546937	-	83	121595657	-	Ajs_3355	-	SSU ribosomal protein S16P
3222	 69.35	0	3547065..3547586	+	173	121595658	-	Ajs_3356	-	GCN5-related N-acetyltransferase
3223	 64.21	0	3547609..3548055	+	148	121595659	-	Ajs_3357	-	hypothetical protein
3224	 65.78	0	3548192..3549202	-	336	121595660	-	Ajs_3358	-	phosphate transporter
3225	 63.43	0	3549262..3549909	-	215	121595661	-	Ajs_3359	-	hypothetical protein
3226	 62.26	0	3550081..3550443	-	120	121595662	-	Ajs_3360	-	hypothetical protein
3227	 65.84	0	3550563..3551291	-	242	121595663	-	Ajs_3361	-	ABC transporter related
3228	 64.75	0	3551304..3552086	-	260	121595664	-	Ajs_3362	-	ABC transporter related
3229	 63.97	0	3552108..3553184	-	358	121595665	-	Ajs_3363	-	inner-membrane translocator
3230	 65.16	0	3553198..3554127	-	309	121595666	-	Ajs_3364	-	inner-membrane translocator
3231	 66.89	0	3554484..3555812	-	442	121595667	-	Ajs_3365	-	recombination factor protein RarA
3232	 63.26	0	3555809..3556807	-	332	121595668	-	Ajs_3366	-	integron integrase
3233	 57.70	-1	3556965..3557945	+	326	121595669	-	Ajs_3367	-	transposase, IS4 family protein
3234	 58.67	-1	3558135..3558434	+	99	121595670	-	Ajs_3368	-	hypothetical protein
3235	 54.44	-2	3558444..3558713	+	89	121595671	-	Ajs_3369	-	hypothetical protein
3236	 64.55	0	3559013..3560239	+	408	121595672	-	Ajs_3370	-	transposase IS116/IS110/IS902 family protein
3237	 54.26	-2	3560381..3560638	+	85	121595673	-	Ajs_3371	-	hypothetical protein
3238	 60.98	-1	3560707..3560952	+	81	121595674	-	Ajs_3372	-	hypothetical protein
3239	 58.16	-1	3560969..3561250	+	93	121595675	-	Ajs_3373	-	hypothetical protein
3240	 64.55	0	3561462..3562688	+	408	121595676	-	Ajs_3374	-	transposase IS116/IS110/IS902 family protein
3241	 64.55	0	3563865..3565091	-	408	121595677	-	Ajs_3377	-	transposase IS116/IS110/IS902 family protein
3242	 64.55	0	3565486..3566712	-	408	121595678	-	Ajs_3378	-	transposase IS116/IS110/IS902 family protein
3243	 68.97	0	3567122..3567511	+	129	121595679	-	Ajs_3379	-	hypothetical protein
3244	 72.97	+1	3567511..3568176	+	221	121595680	-	Ajs_3380	-	uracil-DNA glycosylase superfamily protein
3245	 66.67	0	3568237..3568869	-	210	121595681	-	Ajs_3381	-	outer membrane lipoprotein carrier protein LolA
3246	 67.78	0	3568931..3571261	-	776	121595682	-	Ajs_3382	-	DNA translocase FtsK
3247	 65.93	0	3571554..3572507	+	317	121595683	-	Ajs_3383	-	thioredoxin reductase
3248	 60.68	-1	3572741..3572974	+	77	121595684	-	Ajs_3384	-	50S ribosomal protein L28P
3249	 52.63	-2	3572995..3573165	+	56	121595685	-	Ajs_3385	-	50S ribosomal protein L33P
3250	 67.66	0	3573304..3574515	-	403	121595686	-	Ajs_3386	-	fatty acid desaturase
3251	 69.17	0	3574648..3575925	-	425	121595687	-	Ajs_3387	-	Fmu (Sun) domain-containing protein
3252	 71.98	+1	3575969..3577906	-	645	121595688	-	Ajs_3388	-	peptidase M48, Ste24p
3253	 67.83	0	3577948..3578205	+	85	121595689	-	Ajs_3389	-	hypothetical protein
3254	 71.33	+1	3578414..3578971	+	185	121595690	-	Ajs_3390	-	hypothetical protein
3255	 68.21	0	3579036..3579620	-	194	121595691	-	Ajs_3391	-	phosphoribosylglycinamide formyltransferase
3256	 71.24	+1	3579644..3580321	+	225	121595692	-	Ajs_3392	-	hypothetical protein
3257	 65.82	0	3580409..3581590	+	393	121595693	-	Ajs_3393	-	acyl-CoA dehydrogenase domain-containing protein
3258	 69.53	0	3581603..3582718	+	371	121595694	-	Ajs_3394	-	acyl-CoA dehydrogenase domain-containing protein
3259	 59.37	-1	3583117..3584103	+	328	121595695	-	Ajs_3395	-	transposase, IS4 family protein
3260	 65.15	0	3584263..3585582	+	439	121595696	-	Ajs_3396	-	methyltransferase type 12
3261	 64.87	0	3585646..3586203	-	185	121595697	-	Ajs_3397	-	HNH endonuclease
3262	 69.92	0	3586366..3587409	+	347	121595698	-	Ajs_3398	-	bifunctional riboflavin kinase/FMN adenylyltransferase
3263	 66.42	0	3587524..3590379	+	951	121595699	-	Ajs_3399	-	isoleucyl-tRNA synthetase
3264	 67.87	0	3590379..3590876	+	165	121595700	-	Ajs_3400	-	signal peptidase II
3265	 68.52	0	3590971..3592641	+	556	121595701	-	Ajs_3401	-	Na/Pi-cotransporter II-related protein
3266	 68.79	0	3592632..3593621	-	329	121595702	-	Ajs_3402	-	hypothetical protein
3267	 64.55	0	3594079..3595305	+	408	121595703	-	Ajs_3403	-	transposase IS116/IS110/IS902 family protein
3268	 71.78	+1	3595453..3596274	-	273	121595704	-	Ajs_3404	-	NUDIX hydrolase
3269	 69.32	0	3597389..3598291	+	300	121595705	-	Ajs_3406	-	hypothetical protein
3270	 71.19	+1	3601000..3602082	-	360	121595706	-	Ajs_3408	-	TRAP dicarboxylate transporter- DctP subunit
3271	 63.27	0	3602540..3603628	+	362	121595707	-	Ajs_3410	-	transposase, IS4 family protein
3272	 65.48	0	3605044..3606555	-	503	121595708	-	Ajs_3411	-	hypothetical protein
3273	 61.55	-1	3606572..3607060	-	162	121595709	-	Ajs_3412	-	hypothetical protein
3274	 69.34	0	3607362..3609158	-	598	121595710	-	Ajs_3413	-	type II secretion system protein E
3275	 68.50	0	3609179..3609940	-	253	121595711	-	Ajs_3414	-	hypothetical protein
3276	 67.63	0	3609945..3610568	-	207	121595712	-	Ajs_3415	-	hypothetical protein
3277	 69.98	0	3610575..3611420	-	281	121595713	-	Ajs_3416	-	TatD-related deoxyribonuclease
3278	 69.70	0	3611530..3611727	-	65	121595714	-	Ajs_3417	-	hypothetical protein
3279	 70.23	0	3611783..3612091	-	102	121595715	-	Ajs_3418	-	ArsR family transcriptional regulator
3280	 69.09	0	3612205..3612576	+	123	121595716	-	Ajs_3419	-	alkylhydroperoxidase
3281	 70.34	0	3612632..3613312	-	226	121595717	-	Ajs_3420	-	lipoprotein releasing system, ATP-binding protein
3282	 67.38	0	3613305..3614558	-	417	121595718	-	Ajs_3421	-	LolC/E family lipoprotein releasing system, transmembrane protein
3283	 65.58	0	3614696..3615886	-	396	121595719	-	Ajs_3422	-	glycerophosphoryl diester phosphodiesterase
3284	 73.77	+1	3616003..3616959	+	318	121595720	-	Ajs_3423	-	hypothetical protein
3285	 70.84	0	3616956..3618680	+	574	121595721	-	Ajs_3424	-	single-stranded-DNA-specific exonuclease RecJ
3286	 60.73	-1	3618775..3619077	+	100	121595722	-	Ajs_3425	-	putative lipoprotein
3287	 57.70	-1	3619206..3620186	-	326	121595723	-	Ajs_3426	-	transposase, IS4 family protein
3288	 61.38	-1	3620641..3621018	+	125	121595724	-	Ajs_3428	-	hypothetical protein
3289	 61.63	-1	3621015..3621689	+	224	121595725	-	Ajs_3429	-	hypothetical protein
3290	 68.55	0	3621796..3623550	-	584	121595726	-	Ajs_3430	-	methyl-accepting chemotaxis sensory transducer
3291	 67.80	0	3623754..3624632	+	292	121595727	-	Ajs_3431	-	phosphotransferase domain-containing protein
3292	 66.04	0	3624648..3625283	+	211	121595728	-	Ajs_3432	-	Sua5/YciO/YrdC/YwlC family protein
3293	 74.35	+1	3625408..3627477	-	689	121595729	-	Ajs_3433	-	von Willebrand factor, type A
3294	 70.90	0	3627480..3628283	-	267	121595730	-	Ajs_3434	-	ATPase
3295	 63.25	0	3628303..3629676	-	457	121595731	-	Ajs_3435	-	cytochrome c oxidase, subunit I
3296	 64.38	0	3629707..3630579	-	290	121595732	-	Ajs_3436	-	cytochrome c, class I
3297	 65.21	0	3630852..3631538	+	228	121595733	-	Ajs_3437	-	peptidase M50
3298	 67.28	0	3631563..3632867	+	434	121595734	-	Ajs_3438	-	tryptophanyl-tRNA synthetase
3299	 58.95	-1	3633155..3633439	+	94	121595735	-	Ajs_3439	-	hypothetical protein
3300	 64.55	0	3634290..3635516	+	408	121595736	-	Ajs_3441	-	transposase IS116/IS110/IS902 family protein
3301	 58.30	-1	3636367..3637131	-	254	121595737	-	Ajs_3442	-	diguanylate phosphodiesterase
3302	 54.50	-2	3637389..3637955	+	188	121595738	-	Ajs_3444	-	hypothetical protein
3303	 65.54	0	3638504..3639832	-	442	121595739	-	Ajs_3445	-	seryl-tRNA synthetase
3304	 71.22	+1	3639965..3640645	+	226	121595740	-	Ajs_3446	-	signal transduction protein
3305	 66.59	0	3640649..3641971	-	440	121595741	-	Ajs_3447	-	hypothetical protein
3306	 67.77	0	3642221..3643216	-	331	121595742	-	Ajs_3448	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
3307	 69.05	0	3643230..3643607	-	125	121595743	-	Ajs_3449	-	peptidylprolyl isomerase, FKBP-type
3308	 71.41	+1	3643789..3644505	+	238	121595744	-	Ajs_3450	-	DNA repair protein RadC
3309	 73.66	+1	3644502..3645716	+	404	121595745	-	Ajs_3451	-	hypothetical protein
3310	 73.98	+1	3645689..3646372	+	227	121595746	-	Ajs_3452	-	Smr protein/MutS2
3311	 67.15	0	3646507..3648588	-	693	121595747	-	Ajs_3453	-	5'-nucleotidase domain-containing protein
3312	 68.31	0	3648727..3649152	-	141	121595748	-	Ajs_3454	-	globin
3313	 71.52	+1	3649189..3649641	-	150	121595749	-	Ajs_3455	-	TraR/DksA family transcriptional regulator
3314	 72.26	+1	3649619..3651190	-	523	121595750	-	Ajs_3456	-	hypothetical protein
3315	 70.61	0	3651236..3651463	-	75	121595751	-	Ajs_3457	-	hypothetical protein
3316	 70.36	0	3651472..3654045	-	857	121595752	-	Ajs_3458	-	hypothetical protein
3317	 65.10	0	3654119..3655009	-	296	121595753	-	Ajs_3459	-	formate dehydrogenase, subunit FdhD
3318	 71.25	+1	3655126..3655518	-	130	121595754	-	Ajs_3460	-	hypothetical protein
3319	 66.17	0	3655515..3656720	-	401	121595755	-	Ajs_3461	-	formate dehydrogenase gamma subunit
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.