IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.47   STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3160	 67.97	0	3478002..3478847	+	281	121595596	queF	Ajs_3294	-	7-cyano-7-deazaguanine reductase
3161	 70.38	0	3478963..3480522	-	519	121595597	-	Ajs_3295	-	methyl-accepting chemotaxis sensory transducer
3162	 68.33	0	3480660..3481859	-	399	121595598	-	Ajs_3296	-	DNA-directed DNA polymerase
3163	 71.47	+1	3482034..3482969	-	311	121595599	-	Ajs_3297	-	hypothetical protein
3164	 67.35	0	3483127..3484299	-	390	121595600	-	Ajs_3298	-	(S)-2-hydroxy-acid oxidase
3165	 73.39	+1	3484522..3486798	-	758	121595601	-	Ajs_3299	-	penicillin-binding protein 1C
3166	 71.02	0	3486770..3487642	-	290	121595602	-	Ajs_3300	-	hypothetical protein
3167	 70.37	0	3487721..3488098	-	125	121595603	-	Ajs_3301	-	hypothetical protein
3168	 70.83	0	3488243..3488458	+	71	121595604	-	Ajs_3302	-	hypothetical protein
3169	 71.46	+1	3488471..3489346	-	291	121595605	-	Ajs_3303	-	endonuclease/exonuclease/phosphatase
3170	 65.09	0	3489417..3490238	-	273	121595606	-	Ajs_3304	-	binding-protein-dependent transport systems inner membrane component
3171	 66.45	0	3490386..3491288	-	300	121595607	-	Ajs_3305	-	binding-protein-dependent transport systems inner membrane component
3172	 64.43	0	3491302..3492597	-	431	121595608	-	Ajs_3306	-	extracellular solute-binding protein
3173	 69.93	0	3492691..3493731	-	346	121595609	-	Ajs_3307	-	ABC transporter related
3174	 65.47	0	3494055..3496151	-	698	121595610	-	Ajs_3308	-	choline/carnitine/betaine transporter
3175	 71.33	+1	3496696..3502764	-	2022	121595611	-	Ajs_3309	-	alpha-2-macroglobulin domain-containing protein
3176	 69.42	0	3502946..3505054	+	702	121595612	-	Ajs_3310	-	catalase
3177	 71.79	+1	3505133..3506107	-	324	121595613	-	Ajs_3311	-	hypothetical protein
3178	 67.97	0	3506241..3507701	-	486	121595614	-	Ajs_3312	-	argininosuccinate lyase
3179	 73.78	+1	3507751..3508818	+	355	121595615	-	Ajs_3313	-	histidine kinase internal region
3180	 73.44	+1	3508865..3509617	+	250	121595616	-	Ajs_3314	-	LytR/AlgR family transcriptional regulator
3181	 70.28	0	3509772..3510602	-	276	121595617	-	Ajs_3315	-	zinc/iron permease
3182	 68.46	0	3510721..3511614	-	297	121595618	-	Ajs_3316	-	carboxymethylenebutenolidase
3183	 68.36	0	3511764..3514532	-	922	121595619	-	Ajs_3317	-	DNA polymerase I
3184	 64.99	0	3514675..3515091	+	138	121595620	-	Ajs_3318	-	hypothetical protein
3185	 65.58	0	3515128..3515496	+	122	121595621	-	Ajs_3319	-	hypothetical protein
3186	 68.24	0	3515588..3516538	+	316	121595622	-	Ajs_3320	-	homoserine kinase
3187	 68.96	0	3516689..3517516	+	275	121595623	-	Ajs_3321	-	hypothetical protein
3188	 71.13	0	3517815..3518486	-	223	121595624	-	Ajs_3322	-	OmpA/MotB domain-containing protein
3189	 69.95	0	3518486..3519094	-	202	121595625	-	Ajs_3323	-	hypothetical protein
3190	 66.30	0	3519378..3521828	-	816	121595626	-	Ajs_3324	-	ATP-dependent DNA helicase UvrD
3191	 71.45	+1	3521932..3522600	+	222	121595627	-	Ajs_3325	-	hypothetical protein
3192	 62.17	0	3522792..3523769	+	325	121595628	-	Ajs_3326	-	guanosine 5'-monophosphate oxidoreductase
3193	 51.23	-2	3524913..3525644	-	243	121595629	-	Ajs_3327	-	hypothetical protein
3194	 65.55	0	3525699..3526145	-	148	121595630	-	Ajs_3328	-	hypothetical protein
3195	 67.63	0	3526296..3526607	-	103	121595631	-	Ajs_3329	-	hypothetical protein
3196	 63.89	0	3526618..3527085	-	155	121595632	-	Ajs_3330	-	hypothetical protein
3197	 63.27	0	3527572..3528660	+	362	121595633	-	Ajs_3331	-	transposase, IS4 family protein
3198	 61.23	-1	3528800..3529222	-	140	121595634	-	Ajs_3332	-	hypothetical protein
3199	 64.76	0	3529215..3529529	-	104	121595635	-	Ajs_3333	-	hypothetical protein
3200	 66.16	0	3529526..3530113	-	195	121595636	-	Ajs_3334	-	hypothetical protein
3201	 59.68	-1	3530091..3530276	-	61	121595637	-	Ajs_3335	-	hypothetical protein
3202	 64.63	0	3530276..3530521	-	81	121595638	-	Ajs_3336	-	hypothetical protein
3203	 60.71	-1	3530670..3531491	-	273	121595639	-	Ajs_3337	-	hypothetical protein
3204	 62.77	0	3531593..3531874	-	93	121595640	-	Ajs_3338	-	hypothetical protein
3205	 58.06	-1	3531861..3532139	-	92	121595641	-	Ajs_3339	-	hypothetical protein
3206	 64.02	0	3532196..3533554	-	452	121595642	-	Ajs_3340	-	phage integrase family protein
3207	 71.62	+1	3534001..3534666	+	221	121595643	-	Ajs_3341	-	Crp/FNR family transcriptional regulator
3208	 71.59	+1	3534690..3535136	+	148	121595644	-	Ajs_3342	-	hypothetical protein
3209	 70.35	0	3535230..3535718	+	162	121595645	-	Ajs_3343	-	hypothetical protein
3210	 69.42	0	3535899..3537134	+	411	121595646	-	Ajs_3344	-	Bcr/CflA subfamily drug resistance transporter
3211	 68.64	0	3537411..3539288	-	625	121595647	-	Ajs_3345	-	DEAD/DEAH box helicase domain-containing protein
3212	 63.90	0	3539571..3540149	-	192	121595648	-	Ajs_3346	-	oligoribonuclease
3213	 68.11	0	3540188..3541501	+	437	121595649	-	Ajs_3347	-	Ste24 endopeptidase
3214	 59.59	-1	3541498..3541836	+	112	121595650	-	Ajs_3348	-	pterin-4-alpha-carbinolamine dehydratase
3215	 69.04	0	3541841..3542809	+	322	121595651	-	Ajs_3349	-	ribosome small subunit-dependent GTPase A
3216	 69.30	0	3542875..3543861	-	328	121595652	-	Ajs_3350	-	cobalamin biosynthesis protein CbiB
3217	 69.80	0	3543940..3544674	-	244	121595653	-	Ajs_3351	-	NUDIX hydrolase
3218	 63.28	0	3544742..3545125	-	127	121595654	-	Ajs_3352	-	50S ribosomal protein L19P
3219	 70.96	0	3545239..3546006	-	255	121595655	-	Ajs_3353	-	tRNA (Guanine37-N1) methyltransferase
3220	 66.35	0	3546025..3546654	-	209	121595656	-	Ajs_3354	-	16S rRNA processing protein RimM
3221	 65.48	0	3546686..3546937	-	83	121595657	-	Ajs_3355	-	SSU ribosomal protein S16P
3222	 69.35	0	3547065..3547586	+	173	121595658	-	Ajs_3356	-	GCN5-related N-acetyltransferase
3223	 64.21	0	3547609..3548055	+	148	121595659	-	Ajs_3357	-	hypothetical protein
3224	 65.78	0	3548192..3549202	-	336	121595660	-	Ajs_3358	-	phosphate transporter
3225	 63.43	0	3549262..3549909	-	215	121595661	-	Ajs_3359	-	hypothetical protein
3226	 62.26	0	3550081..3550443	-	120	121595662	-	Ajs_3360	-	hypothetical protein
3227	 65.84	0	3550563..3551291	-	242	121595663	-	Ajs_3361	-	ABC transporter related
3228	 64.75	0	3551304..3552086	-	260	121595664	-	Ajs_3362	-	ABC transporter related
3229	 63.97	0	3552108..3553184	-	358	121595665	-	Ajs_3363	-	inner-membrane translocator
3230	 65.16	0	3553198..3554127	-	309	121595666	-	Ajs_3364	-	inner-membrane translocator
3231	 66.89	0	3554484..3555812	-	442	121595667	-	Ajs_3365	-	recombination factor protein RarA
3232	 63.26	0	3555809..3556807	-	332	121595668	-	Ajs_3366	-	integron integrase
3233	 57.70	-1	3556965..3557945	+	326	121595669	-	Ajs_3367	-	transposase, IS4 family protein
3234	 58.67	-1	3558135..3558434	+	99	121595670	-	Ajs_3368	-	hypothetical protein
3235	 54.44	-2	3558444..3558713	+	89	121595671	-	Ajs_3369	-	hypothetical protein
3236	 64.55	0	3559013..3560239	+	408	121595672	-	Ajs_3370	-	transposase IS116/IS110/IS902 family protein
3237	 54.26	-2	3560381..3560638	+	85	121595673	-	Ajs_3371	-	hypothetical protein
3238	 60.98	-1	3560707..3560952	+	81	121595674	-	Ajs_3372	-	hypothetical protein
3239	 58.16	-1	3560969..3561250	+	93	121595675	-	Ajs_3373	-	hypothetical protein
3240	 64.55	0	3561462..3562688	+	408	121595676	-	Ajs_3374	-	transposase IS116/IS110/IS902 family protein
3241	 64.55	0	3563865..3565091	-	408	121595677	-	Ajs_3377	-	transposase IS116/IS110/IS902 family protein
3242	 64.55	0	3565486..3566712	-	408	121595678	-	Ajs_3378	-	transposase IS116/IS110/IS902 family protein
3243	 68.97	0	3567122..3567511	+	129	121595679	-	Ajs_3379	-	hypothetical protein
3244	 72.97	+1	3567511..3568176	+	221	121595680	-	Ajs_3380	-	uracil-DNA glycosylase superfamily protein
3245	 66.67	0	3568237..3568869	-	210	121595681	-	Ajs_3381	-	outer membrane lipoprotein carrier protein LolA
3246	 67.78	0	3568931..3571261	-	776	121595682	-	Ajs_3382	-	DNA translocase FtsK
3247	 65.93	0	3571554..3572507	+	317	121595683	-	Ajs_3383	-	thioredoxin reductase
3248	 60.68	-1	3572741..3572974	+	77	121595684	-	Ajs_3384	-	50S ribosomal protein L28P
3249	 52.63	-2	3572995..3573165	+	56	121595685	-	Ajs_3385	-	50S ribosomal protein L33P
3250	 67.66	0	3573304..3574515	-	403	121595686	-	Ajs_3386	-	fatty acid desaturase
3251	 69.17	0	3574648..3575925	-	425	121595687	-	Ajs_3387	-	Fmu (Sun) domain-containing protein
3252	 71.98	+1	3575969..3577906	-	645	121595688	-	Ajs_3388	-	peptidase M48, Ste24p
3253	 67.83	0	3577948..3578205	+	85	121595689	-	Ajs_3389	-	hypothetical protein
3254	 71.33	+1	3578414..3578971	+	185	121595690	-	Ajs_3390	-	hypothetical protein
3255	 68.21	0	3579036..3579620	-	194	121595691	-	Ajs_3391	-	phosphoribosylglycinamide formyltransferase
3256	 71.24	+1	3579644..3580321	+	225	121595692	-	Ajs_3392	-	hypothetical protein
3257	 65.82	0	3580409..3581590	+	393	121595693	-	Ajs_3393	-	acyl-CoA dehydrogenase domain-containing protein
3258	 69.53	0	3581603..3582718	+	371	121595694	-	Ajs_3394	-	acyl-CoA dehydrogenase domain-containing protein
3259	 59.37	-1	3583117..3584103	+	328	121595695	-	Ajs_3395	-	transposase, IS4 family protein
66.47	MEAN

4.71	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.