IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.47   STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3131	 71.39	+1	3448149..3449864	-	571	121595567	-	Ajs_3264	-	hypothetical protein
3132	 70.22	0	3450047..3450835	-	262	121595568	-	Ajs_3265	-	DNA repair protein RecO
3133	 63.12	0	3451089..3452102	-	337	121595569	-	Ajs_3266	-	GTP-binding protein Era
3134	 67.10	0	3452099..3452785	-	228	121595570	-	Ajs_3267	-	ribonuclease III
3135	 60.05	-1	3452791..3453168	-	125	121595571	-	Ajs_3268	-	putative transmembrane protein
3136	 61.92	0	3453196..3454164	-	322	121595572	-	Ajs_3269	-	signal peptidase I
3137	 62.30	0	3454179..3455987	-	602	121595573	-	Ajs_3270	-	GTP-binding protein LepA
3138	 63.31	0	3456428..3457858	-	476	121595574	-	Ajs_3271	-	protease Do
3139	 63.55	0	3457998..3459023	-	341	121595575	-	Ajs_3272	-	sigma E regulatory protein, MucB/RseB
3140	 65.06	0	3459089..3459712	-	207	121595576	-	Ajs_3273	-	anti sigma-E protein, RseA
3141	 61.48	-1	3459753..3460388	-	211	121595577	-	Ajs_3274	-	RNA polymerase sigma factor RpoE
3142	 65.17	0	3460385..3460918	-	177	121595578	-	Ajs_3275	-	hypothetical protein
3143	 61.29	-1	3461010..3462254	-	414	121595579	-	Ajs_3276	-	3-oxoacyl-[acyl-carrier-protein] synthase II
3144	 53.75	-2	3462312..3462551	-	79	121595580	-	Ajs_3277	-	acyl carrier protein
3145	 63.29	0	3462655..3463395	-	246	121595581	-	Ajs_3278	-	3-oxoacyl-[acyl-carrier-protein] reductase
3146	 66.25	0	3463392..3464360	-	322	121595582	-	Ajs_3279	-	[Acyl-carrier-protein] S-malonyltransferase
3147	 64.72	0	3464402..3465379	-	325	121595583	-	Ajs_3280	-	3-oxoacyl-(acyl carrier protein) synthase III
3148	 61.82	0	3465398..3466429	-	343	121595584	-	Ajs_3281	-	phosphate:acyl-[acyl carrier protein] acyltransferase
3149	 59.56	-1	3466552..3466734	-	60	121595585	-	Ajs_3282	-	50S ribosomal protein L32P
3150	 65.04	0	3466867..3467418	-	183	121595586	-	Ajs_3283	-	hypothetical protein
3151	 71.33	+1	3467445..3468044	+	199	121595587	-	Ajs_3284	-	maf protein
3152	 69.27	0	3468041..3468847	+	268	121595588	-	Ajs_3285	-	uroporphyrin-III C/tetrapyrrole methyltransferase
3153	 67.34	0	3468932..3469975	-	347	121595589	-	Ajs_3286	-	peptidase S49
3154	 66.40	0	3469980..3470357	-	125	121595590	-	Ajs_3287	-	Rieske (2Fe-2S) domain-containing protein
3155	 68.46	0	3470357..3471025	-	222	121595591	-	Ajs_3288	-	HAD family hydrolase
3156	 70.60	0	3472626..3475703	+	1025	121595592	-	Ajs_3290	-	ribonuclease E
3157	 69.46	0	3475845..3476633	+	262	121595593	-	Ajs_3291	-	hypothetical protein
3158	 68.22	0	3476665..3477051	+	128	121595594	-	Ajs_3292	-	hypothetical protein
3159	 69.77	0	3477074..3477943	+	289	121595595	-	Ajs_3293	-	2OG-Fe(II) oxygenase
3160	 67.97	0	3478002..3478847	+	281	121595596	queF	Ajs_3294	-	7-cyano-7-deazaguanine reductase
3161	 70.38	0	3478963..3480522	-	519	121595597	-	Ajs_3295	-	methyl-accepting chemotaxis sensory transducer
3162	 68.33	0	3480660..3481859	-	399	121595598	-	Ajs_3296	-	DNA-directed DNA polymerase
3163	 71.47	+1	3482034..3482969	-	311	121595599	-	Ajs_3297	-	hypothetical protein
3164	 67.35	0	3483127..3484299	-	390	121595600	-	Ajs_3298	-	(S)-2-hydroxy-acid oxidase
3165	 73.39	+1	3484522..3486798	-	758	121595601	-	Ajs_3299	-	penicillin-binding protein 1C
3166	 71.02	0	3486770..3487642	-	290	121595602	-	Ajs_3300	-	hypothetical protein
3167	 70.37	0	3487721..3488098	-	125	121595603	-	Ajs_3301	-	hypothetical protein
3168	 70.83	0	3488243..3488458	+	71	121595604	-	Ajs_3302	-	hypothetical protein
3169	 71.46	+1	3488471..3489346	-	291	121595605	-	Ajs_3303	-	endonuclease/exonuclease/phosphatase
3170	 65.09	0	3489417..3490238	-	273	121595606	-	Ajs_3304	-	binding-protein-dependent transport systems inner membrane component
3171	 66.45	0	3490386..3491288	-	300	121595607	-	Ajs_3305	-	binding-protein-dependent transport systems inner membrane component
3172	 64.43	0	3491302..3492597	-	431	121595608	-	Ajs_3306	-	extracellular solute-binding protein
3173	 69.93	0	3492691..3493731	-	346	121595609	-	Ajs_3307	-	ABC transporter related
3174	 65.47	0	3494055..3496151	-	698	121595610	-	Ajs_3308	-	choline/carnitine/betaine transporter
3175	 71.33	+1	3496696..3502764	-	2022	121595611	-	Ajs_3309	-	alpha-2-macroglobulin domain-containing protein
3176	 69.42	0	3502946..3505054	+	702	121595612	-	Ajs_3310	-	catalase
3177	 71.79	+1	3505133..3506107	-	324	121595613	-	Ajs_3311	-	hypothetical protein
3178	 67.97	0	3506241..3507701	-	486	121595614	-	Ajs_3312	-	argininosuccinate lyase
3179	 73.78	+1	3507751..3508818	+	355	121595615	-	Ajs_3313	-	histidine kinase internal region
3180	 73.44	+1	3508865..3509617	+	250	121595616	-	Ajs_3314	-	LytR/AlgR family transcriptional regulator
3181	 70.28	0	3509772..3510602	-	276	121595617	-	Ajs_3315	-	zinc/iron permease
3182	 68.46	0	3510721..3511614	-	297	121595618	-	Ajs_3316	-	carboxymethylenebutenolidase
3183	 68.36	0	3511764..3514532	-	922	121595619	-	Ajs_3317	-	DNA polymerase I
3184	 64.99	0	3514675..3515091	+	138	121595620	-	Ajs_3318	-	hypothetical protein
3185	 65.58	0	3515128..3515496	+	122	121595621	-	Ajs_3319	-	hypothetical protein
3186	 68.24	0	3515588..3516538	+	316	121595622	-	Ajs_3320	-	homoserine kinase
3187	 68.96	0	3516689..3517516	+	275	121595623	-	Ajs_3321	-	hypothetical protein
3188	 71.13	0	3517815..3518486	-	223	121595624	-	Ajs_3322	-	OmpA/MotB domain-containing protein
3189	 69.95	0	3518486..3519094	-	202	121595625	-	Ajs_3323	-	hypothetical protein
3190	 66.30	0	3519378..3521828	-	816	121595626	-	Ajs_3324	-	ATP-dependent DNA helicase UvrD
3191	 71.45	+1	3521932..3522600	+	222	121595627	-	Ajs_3325	-	hypothetical protein
3192	 62.17	0	3522792..3523769	+	325	121595628	-	Ajs_3326	-	guanosine 5'-monophosphate oxidoreductase
3193	 51.23	-2	3524913..3525644	-	243	121595629	-	Ajs_3327	-	hypothetical protein
3194	 65.55	0	3525699..3526145	-	148	121595630	-	Ajs_3328	-	hypothetical protein
3195	 67.63	0	3526296..3526607	-	103	121595631	-	Ajs_3329	-	hypothetical protein
3196	 63.89	0	3526618..3527085	-	155	121595632	-	Ajs_3330	-	hypothetical protein
3197	 63.27	0	3527572..3528660	+	362	121595633	-	Ajs_3331	-	transposase, IS4 family protein
3198	 61.23	-1	3528800..3529222	-	140	121595634	-	Ajs_3332	-	hypothetical protein
3199	 64.76	0	3529215..3529529	-	104	121595635	-	Ajs_3333	-	hypothetical protein
3200	 66.16	0	3529526..3530113	-	195	121595636	-	Ajs_3334	-	hypothetical protein
3201	 59.68	-1	3530091..3530276	-	61	121595637	-	Ajs_3335	-	hypothetical protein
3202	 64.63	0	3530276..3530521	-	81	121595638	-	Ajs_3336	-	hypothetical protein
3203	 60.71	-1	3530670..3531491	-	273	121595639	-	Ajs_3337	-	hypothetical protein
3204	 62.77	0	3531593..3531874	-	93	121595640	-	Ajs_3338	-	hypothetical protein
3205	 58.06	-1	3531861..3532139	-	92	121595641	-	Ajs_3339	-	hypothetical protein
3206	 64.02	0	3532196..3533554	-	452	121595642	-	Ajs_3340	-	phage integrase family protein
3207	 71.62	+1	3534001..3534666	+	221	121595643	-	Ajs_3341	-	Crp/FNR family transcriptional regulator
3208	 71.59	+1	3534690..3535136	+	148	121595644	-	Ajs_3342	-	hypothetical protein
3209	 70.35	0	3535230..3535718	+	162	121595645	-	Ajs_3343	-	hypothetical protein
3210	 69.42	0	3535899..3537134	+	411	121595646	-	Ajs_3344	-	Bcr/CflA subfamily drug resistance transporter
3211	 68.64	0	3537411..3539288	-	625	121595647	-	Ajs_3345	-	DEAD/DEAH box helicase domain-containing protein
3212	 63.90	0	3539571..3540149	-	192	121595648	-	Ajs_3346	-	oligoribonuclease
3213	 68.11	0	3540188..3541501	+	437	121595649	-	Ajs_3347	-	Ste24 endopeptidase
3214	 59.59	-1	3541498..3541836	+	112	121595650	-	Ajs_3348	-	pterin-4-alpha-carbinolamine dehydratase
3215	 69.04	0	3541841..3542809	+	322	121595651	-	Ajs_3349	-	ribosome small subunit-dependent GTPase A
3216	 69.30	0	3542875..3543861	-	328	121595652	-	Ajs_3350	-	cobalamin biosynthesis protein CbiB
3217	 69.80	0	3543940..3544674	-	244	121595653	-	Ajs_3351	-	NUDIX hydrolase
3218	 63.28	0	3544742..3545125	-	127	121595654	-	Ajs_3352	-	50S ribosomal protein L19P
3219	 70.96	0	3545239..3546006	-	255	121595655	-	Ajs_3353	-	tRNA (Guanine37-N1) methyltransferase
3220	 66.35	0	3546025..3546654	-	209	121595656	-	Ajs_3354	-	16S rRNA processing protein RimM
3221	 65.48	0	3546686..3546937	-	83	121595657	-	Ajs_3355	-	SSU ribosomal protein S16P
3222	 69.35	0	3547065..3547586	+	173	121595658	-	Ajs_3356	-	GCN5-related N-acetyltransferase
3223	 64.21	0	3547609..3548055	+	148	121595659	-	Ajs_3357	-	hypothetical protein
3224	 65.78	0	3548192..3549202	-	336	121595660	-	Ajs_3358	-	phosphate transporter
3225	 63.43	0	3549262..3549909	-	215	121595661	-	Ajs_3359	-	hypothetical protein
3226	 62.26	0	3550081..3550443	-	120	121595662	-	Ajs_3360	-	hypothetical protein
3227	 65.84	0	3550563..3551291	-	242	121595663	-	Ajs_3361	-	ABC transporter related
3228	 64.75	0	3551304..3552086	-	260	121595664	-	Ajs_3362	-	ABC transporter related
3229	 63.97	0	3552108..3553184	-	358	121595665	-	Ajs_3363	-	inner-membrane translocator
3230	 65.16	0	3553198..3554127	-	309	121595666	-	Ajs_3364	-	inner-membrane translocator
66.47	MEAN

4.71	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.