IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2940	 70.04	0	3234021..3235088	+	355	121595376	-	Ajs_3066	-	permease YjgP/YjgQ family protein
2941	 71.46	+1	3235085..3236293	+	402	121595377	-	Ajs_3067	-	putative phosphatidyltransferase
2942	 65.87	0	3236300..3237427	+	375	121595378	-	Ajs_3068	-	hypothetical protein
2943	 73.11	+1	3237429..3238235	+	268	121595379	-	Ajs_3069	-	hypothetical protein
2944	 68.06	0	3238221..3239012	-	263	121595380	-	Ajs_3070	-	nucleotidyl transferase
2945	 67.88	0	3239076..3239732	-	218	121595381	-	Ajs_3071	-	4'-phosphopantetheinyl transferase
2946	 70.40	0	3239796..3241109	+	437	121595382	-	Ajs_3072	-	cytochrome P450
2947	 66.51	0	3241129..3243090	+	653	121595383	-	Ajs_3073	-	AMP-dependent synthetase and ligase
2948	 67.99	0	3243316..3245127	+	603	121595384	-	Ajs_3074	-	AMP-dependent synthetase and ligase
2949	 66.67	0	3245147..3245395	+	82	121595385	-	Ajs_3075	-	acyl carrier protein
2950	 68.27	0	3245392..3246573	+	393	121595386	-	Ajs_3076	-	serine palmitoyltransferase
2951	 61.89	0	3246578..3247498	-	306	121595387	-	Ajs_3077	-	hypothetical protein
2952	 70.17	0	3247671..3248555	+	294	121595388	-	Ajs_3078	-	hypothetical protein
2953	 72.13	+1	3248581..3249660	-	359	121595389	-	Ajs_3079	-	nucleoside-diphosphate-sugar epimerase-like protein
2954	 72.85	+1	3249660..3250646	-	328	121595390	-	Ajs_3080	-	NAD-dependent epimerase/dehydratase
2955	 66.34	0	3250745..3251047	+	100	121595391	-	Ajs_3081	-	hypothetical protein
2956	 68.42	0	3251066..3251578	-	170	121595392	-	Ajs_3082	-	CMP/dCMP deaminase, zinc-binding
2957	 56.06	-2	3251642..3251971	-	109	121595393	-	Ajs_3083	-	hypothetical protein
2958	 64.97	0	3254996..3255760	-	254	121595394	-	Ajs_3085	-	IstB ATP binding domain-containing protein
2959	 65.98	0	3255757..3257352	-	531	121595395	-	Ajs_3086	-	integrase catalytic subunit
2960	 64.84	0	3257465..3259048	+	527	121595396	-	Ajs_3087	-	methyl-accepting chemotaxis sensory transducer
2961	 58.28	-1	3259015..3259920	-	301	121595397	-	Ajs_3088	-	LysR family transcriptional regulator
2962	 61.30	-1	3260037..3261023	+	328	121595398	-	Ajs_3089	-	oxidoreductase FAD-binding subunit
2963	 59.89	-1	3261069..3261629	+	186	121595399	-	Ajs_3090	-	Rieske (2Fe-2S) domain-containing protein
2964	 54.60	-2	3261670..3261984	+	104	121595400	-	Ajs_3091	-	Rieske (2Fe-2S) domain-containing protein
2965	 53.35	-2	3262073..3263416	+	447	121595401	-	Ajs_3092	-	ring hydroxylating dioxygenase, alpha subunit
2966	 52.65	-2	3263431..3264015	+	194	121595402	-	Ajs_3093	-	aromatic-ring-hydroxylating dioxygenase, beta subunit
2967	 57.70	-1	3265718..3266698	-	326	121595403	-	Ajs_3096	-	transposase, IS4 family protein
2968	 64.48	0	3267209..3268030	-	273	121595404	-	Ajs_3098	-	IstB ATP binding domain-containing protein
2969	 66.21	0	3268020..3269552	-	510	121595405	-	Ajs_3099	-	integrase catalytic subunit
2970	 64.06	0	3269636..3269980	-	114	121595406	-	Ajs_3100	-	inner-membrane translocator
2971	 69.35	0	3269967..3271568	-	533	121595407	-	Ajs_3101	-	ABC transporter related
2972	 70.54	0	3271749..3273272	+	507	121595408	-	Ajs_3102	-	molybdopterin dehydrogenase, FAD-binding
2973	 69.83	0	3273269..3275674	+	801	121595409	-	Ajs_3103	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
2974	 71.75	+1	3275710..3277812	-	700	121595410	-	Ajs_3104	-	diguanylate cyclase with PAS/PAC sensor
2975	 69.55	0	3278063..3278686	-	207	121595411	-	Ajs_3105	-	Crp/FNR family transcriptional regulator
2976	 69.72	0	3280187..3282019	+	610	121595412	-	Ajs_3107	-	diguanylate cyclase/phosphodiesterase
2977	 71.06	0	3282178..3282609	+	143	121595413	-	Ajs_3108	-	histidine triad (HIT) protein
2978	 71.62	+1	3282617..3283606	-	329	121595414	-	Ajs_3109	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
2979	 72.08	+1	3283751..3285007	+	418	121595415	-	Ajs_3110	-	Bcr/CflA subfamily drug resistance transporter
2980	 71.60	+1	3284997..3285968	+	323	121595416	-	Ajs_3111	-	tRNA delta(2)-isopentenylpyrophosphate transferase
2981	 70.06	0	3285965..3286642	+	225	121595417	-	Ajs_3112	-	ABC transporter related
2982	 60.37	-1	3286639..3287067	-	142	121595418	-	Ajs_3113	-	heat shock protein Hsp20
2983	 74.26	+1	3287205..3289838	+	877	121595419	-	Ajs_3114	-	hypothetical protein
2984	 71.34	+1	3289848..3290939	+	363	121595420	-	Ajs_3115	-	pyridoxal-5'-phosphate-dependent enzyme, beta subunit
2985	 73.32	+1	3290939..3292081	+	380	121595421	-	Ajs_3116	-	secreted hydrolase-like protein
2986	 67.76	0	3292283..3293284	-	333	121595422	-	Ajs_3117	-	inner-membrane translocator
2987	 62.03	0	3293302..3294186	-	294	121595423	-	Ajs_3118	-	inner-membrane translocator
2988	 63.07	0	3294223..3295419	-	398	121595424	-	Ajs_3119	-	extracellular ligand-binding receptor
2989	 62.76	0	3295503..3296705	-	400	121595425	-	Ajs_3120	-	putative substrate-binding periplasmic (pbp) ABC transporter protein
2990	 65.13	0	3296751..3297464	-	237	121595426	-	Ajs_3121	-	ABC transporter related
2991	 61.74	-1	3297466..3298236	-	256	121595427	-	Ajs_3122	-	ABC transporter related
2992	 70.95	0	3298409..3299248	-	279	121595428	-	Ajs_3123	-	ModE family transcriptional regulator
2993	 66.27	0	3299273..3300028	+	251	121595429	-	Ajs_3124	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
2994	 69.01	0	3300104..3300787	+	227	121595430	-	Ajs_3125	-	molybdate ABC transporter, inner membrane subunit
2995	 70.96	0	3300784..3301878	+	364	121595431	-	Ajs_3126	-	molybdate ABC transporter, ATPase subunit
2996	 63.27	0	3302205..3303029	-	274	121595432	-	Ajs_3127	-	extracellular solute-binding protein
2997	 70.66	0	3303026..3303802	-	258	121595433	-	Ajs_3128	-	ABC transporter related
2998	 70.73	0	3303799..3304536	-	245	121595434	-	Ajs_3129	-	binding-protein-dependent transport systems inner membrane component
2999	 71.57	+1	3304587..3305708	+	373	121595435	-	Ajs_3130	-	molybdate metabolism transcriptional regulator
3000	 66.36	0	3305745..3307724	-	659	121595436	-	Ajs_3131	-	TRAP C4-dicarboxylate transport system permease DctM subunit
3001	 67.47	0	3307721..3308341	-	206	121595437	-	Ajs_3132	-	tripartite ATP-independent periplasmic transporter DctQ
3002	 64.52	0	3308469..3309584	-	371	121595438	-	Ajs_3133	-	TRAP dicarboxylate transporter- DctP subunit
3003	 72.17	+1	3310017..3311069	+	350	121595439	-	Ajs_3134	-	delta1-piperideine 2-carboxylate reductase
3004	 73.32	+1	3311164..3312411	-	415	121595440	-	Ajs_3135	-	Bcr/CflA subfamily drug resistance transporter
3005	 68.38	0	3312471..3314108	-	545	121595441	-	Ajs_3136	-	AMP-dependent synthetase and ligase
3006	 69.42	0	3314198..3316159	+	653	121595442	-	Ajs_3137	-	DNA primase
3007	 63.78	0	3316445..3318838	+	797	121595443	-	Ajs_3138	-	RpoD family RNA polymerase sigma factor
3008	 71.67	+1	3319043..3320002	+	319	121595444	-	Ajs_3139	-	2-dehydropantoate 2-reductase
3009	 71.24	+1	3320167..3320625	+	152	121595445	-	Ajs_3140	-	putative protein-S-isoprenylcysteine methyltransferase-like protein
3010	 71.86	+1	3320670..3321671	-	333	121595446	-	Ajs_3141	-	hypothetical protein
3011	 70.22	0	3321768..3322976	-	402	121595447	-	Ajs_3142	-	L-carnitine dehydratase/bile acid-inducible protein F
3012	 73.46	+1	3323015..3323986	-	323	121595448	-	Ajs_3143	-	hydroxymethylglutaryl-CoA lyase
3013	 71.32	+1	3324098..3325000	+	300	121595449	-	Ajs_3144	-	LysR family transcriptional regulator
3014	 63.40	0	3325175..3325480	+	101	121595450	-	Ajs_3145	-	putative transcriptional regulator
3015	 68.61	0	3325609..3325968	+	119	121595451	-	Ajs_3146	-	peptidylprolyl isomerase
3016	 66.52	0	3326061..3327452	-	463	121595452	-	Ajs_3147	-	MiaB-like tRNA modifying enzyme YliG
3017	 60.88	-1	3327480..3328049	-	189	121595453	-	Ajs_3148	-	polyhydroxyalkonate synthesis repressor, PhaR
3018	 67.47	0	3328386..3330629	-	747	121595454	-	Ajs_3149	-	(p)ppGpp synthetase I, SpoT/RelA
3019	 71.26	+1	3330626..3331561	-	311	121595455	-	Ajs_3150	-	alpha/beta hydrolase fold
3020	 68.07	0	3331631..3332413	+	260	121595456	-	Ajs_3151	-	3-hydroxybutyrate dehydrogenase
3021	 67.51	0	3332493..3333206	-	237	121595457	-	Ajs_3152	-	hypothetical protein
3022	 67.90	0	3333427..3334158	+	243	121595458	ompR	Ajs_3153	-	osmolarity response regulator
3023	 68.33	0	3334242..3335747	+	501	121595459	-	Ajs_3154	-	integral membrane sensor signal transduction histidine kinase
3024	 69.84	0	3335823..3336326	-	167	121595460	-	Ajs_3155	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
3025	 72.84	+1	3336323..3337246	-	307	121595461	-	Ajs_3156	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
3026	 68.50	0	3337264..3340758	+	1164	121595462	-	Ajs_3157	-	transcription-repair coupling factor
3027	 73.19	+1	3340767..3341441	+	224	121595463	-	Ajs_3158	-	hypothetical protein
3028	 68.34	0	3341483..3342199	+	238	121595464	-	Ajs_3159	-	phosphoserine phosphatase
3029	 63.49	0	3342435..3343220	+	261	121595465	-	Ajs_3160	-	YaeC family lipoprotein
3030	 68.64	0	3343294..3343953	-	219	121595466	-	Ajs_3161	-	lysine exporter protein LysE/YggA
3031	 70.29	0	3343997..3344908	+	303	121595467	-	Ajs_3162	-	chromosome replication initiation inhibitor protein
3032	 66.87	0	3344963..3345463	-	166	121595468	-	Ajs_3163	-	BadM/Rrf2 family transcriptional regulator
3033	 68.46	0	3345553..3346275	+	240	121595469	-	Ajs_3164	-	hypothetical protein
3034	 71.31	+1	3346282..3346647	-	121	121595470	-	Ajs_3165	-	hypothetical protein
3035	 68.01	0	3346647..3347093	-	148	121595471	-	Ajs_3166	-	hypothetical protein
3036	 68.45	0	3347112..3348176	-	354	121595472	-	Ajs_3167	-	aldo/keto reductase
3037	 68.52	0	3348190..3348405	-	71	121595473	-	Ajs_3168	-	SlyX family protein
3038	 69.56	0	3348411..3349655	-	414	121595474	-	Ajs_3169	-	GntR family transcriptional regulator
3039	 67.43	0	3349718..3350368	+	216	121595475	-	Ajs_3170	-	endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.