IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2860	 70.33	0	3146787..3148043	+	418	121595296	-	Ajs_2980	-	L-carnitine dehydratase/bile acid-inducible protein F
2861	 67.18	0	3148134..3149102	+	322	121595297	-	Ajs_2981	-	hypothetical protein
2862	 66.98	0	3149119..3150081	-	320	121595298	-	Ajs_2982	-	transposase IS116/IS110/IS902 family protein
2863	 72.00	+1	3151450..3152049	+	199	121595299	-	Ajs_2984	-	hypothetical protein
2864	 70.83	0	3152059..3152706	+	215	121595300	-	Ajs_2985	-	hypothetical protein
2865	 72.10	+1	3152703..3153659	-	318	121595301	-	Ajs_2986	-	NAD-dependent epimerase/dehydratase
2866	 67.90	0	3153705..3154757	+	350	121595302	-	Ajs_2987	-	CDP-6-deoxy-delta-3,4-glucoseen reductase
2867	 66.67	0	3154944..3155294	-	116	121595303	-	Ajs_2988	-	hypothetical protein
2868	 68.72	0	3155427..3156398	+	323	121595304	-	Ajs_2989	-	hypothetical protein
2869	 73.21	+1	3156664..3157167	-	167	121595305	-	Ajs_2990	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
2870	 70.24	0	3157179..3158774	-	531	121595306	-	Ajs_2991	-	poly(A) polymerase
2871	 68.66	0	3158771..3159472	-	233	121595307	-	Ajs_2992	-	HAD family hydrolase
2872	 71.14	0	3159523..3160215	-	230	121595308	-	Ajs_2993	-	chromosomal replication initiator, DnaA
2873	 68.38	0	3160552..3161601	+	349	121595309	-	Ajs_2994	-	phosphoribosylformylglycinamidine cyclo-ligase
2874	 68.61	0	3161620..3162699	+	359	121595310	-	Ajs_2995	-	hypothetical protein
2875	 65.14	0	3162923..3163315	+	130	121595311	-	Ajs_2996	-	UspA domain-containing protein
2876	 64.15	0	3163405..3164319	-	304	121595312	-	Ajs_2997	-	hypothetical protein
2877	 65.61	0	3164427..3165275	-	282	121595313	-	Ajs_2998	-	hypothetical protein
2878	 67.73	0	3165289..3166887	-	532	121595314	-	Ajs_2999	-	integral membrane protein MviN
2879	 61.72	-1	3166959..3167261	+	100	121595315	-	Ajs_3000	-	SSU ribosomal protein S20P
2880	 63.17	0	3167440..3167754	-	104	121595316	-	Ajs_3001	-	hypothetical protein
2881	 67.34	0	3167989..3169185	+	398	121595317	-	Ajs_3002	-	acetylornithine aminotransferase
2882	 65.36	0	3169202..3170119	+	305	121595318	-	Ajs_3003	-	ornithine carbamoyltransferase
2883	 69.57	0	3170457..3170801	+	114	121595319	-	Ajs_3004	-	hypothetical protein
2884	 73.74	+1	3170932..3171129	-	65	121595320	-	Ajs_3005	-	hypothetical protein
2885	 59.67	-1	3171485..3174400	+	971	121595321	-	Ajs_3007	-	transposase Tn3 family protein
2886	 61.11	-1	3174517..3174876	-	119	121595322	-	Ajs_3008	-	putative transposase
2887	 50.00	-2	3174983..3175786	-	267	121595323	-	Ajs_3009	-	phosphotransferase domain-containing protein
2888	 56.31	-2	3175779..3176927	-	382	121595324	-	Ajs_3010	-	hypothetical protein
2889	 56.30	-2	3176984..3177793	-	269	121595325	-	Ajs_3011	-	hypothetical protein
2890	 56.27	-2	3178522..3180915	-	797	121595326	-	Ajs_3012	-	lipopolysaccharide biosynthesis
2891	 59.90	-1	3180966..3181778	-	270	121595327	-	Ajs_3013	-	polysaccharide export protein
2892	 58.56	-1	3182055..3183350	+	431	121595328	-	Ajs_3014	-	UDP-glucose/GDP-mannose dehydrogenase
2893	 59.35	-1	3183384..3184367	+	327	121595329	-	Ajs_3015	-	oxidoreductase domain-containing protein
2894	 58.80	-1	3184436..3185083	+	215	121595330	-	Ajs_3016	-	putative acetyltransferase
2895	 57.41	-1	3185087..3185356	+	89	121595331	-	Ajs_3017	-	hypothetical protein
2896	 62.94	0	3185353..3186909	+	518	121595332	-	Ajs_3018	-	DegT/DnrJ/EryC1/StrS aminotransferase
2897	 59.60	-1	3186923..3187120	+	65	121595333	-	Ajs_3019	-	putative transcriptional regulator
2898	 54.22	-2	3187117..3187566	+	149	121595334	-	Ajs_3020	-	hypothetical protein
2899	 55.40	-2	3187556..3187768	+	70	121595335	-	Ajs_3021	-	hypothetical protein
2900	 45.40	-2	3188053..3189453	+	466	121595336	-	Ajs_3022	-	polysaccharide biosynthesis protein
2901	 38.26	-2	3189463..3190620	+	385	121595337	-	Ajs_3023	-	glycosyl transferase, group 1
2902	 36.39	-2	3190614..3191858	+	414	121595338	-	Ajs_3024	-	hypothetical protein
2903	 57.09	-1	3191845..3193014	+	389	121595339	-	Ajs_3025	-	glycosyl transferase, group 1
2904	 59.54	-1	3193004..3194056	+	350	121595340	-	Ajs_3026	-	polysaccharide biosynthesis protein CapD
2905	 62.96	0	3194323..3194538	+	71	121595341	-	Ajs_3027	-	hypothetical protein
2906	 60.84	-1	3194542..3194970	+	142	121595342	-	Ajs_3028	-	PilT domain-containing protein
2907	 61.20	-1	3195058..3196209	+	383	121595343	-	Ajs_3029	-	NAD-dependent epimerase/dehydratase
2908	 58.23	-1	3196206..3197426	+	406	121595344	-	Ajs_3030	-	SMC domain-containing protein
2909	 54.42	-2	3197423..3197920	+	165	121595345	-	Ajs_3031	-	hypothetical protein
2910	 60.45	-1	3197928..3199070	+	380	121595346	-	Ajs_3032	-	UDP-N-acetylglucosamine 2-epimerase
2911	 63.10	0	3199090..3200322	+	410	121595347	-	Ajs_3033	-	glycosyl transferase, group 1
2912	 63.64	0	3200408..3201001	+	197	121595348	-	Ajs_3034	-	undecaprenyl-phosphate galactose phosphotransferase
2913	 60.66	-1	3200998..3201663	+	221	121595349	-	Ajs_3035	-	putative acetyl transferase protein
2914	 67.15	0	3201678..3202088	+	136	121595350	-	Ajs_3036	-	VanZ family protein
2915	 64.79	0	3202109..3203335	+	408	121595351	-	Ajs_3037	-	DegT/DnrJ/EryC1/StrS aminotransferase
2916	 54.09	-2	3205648..3206673	-	341	121595352	-	Ajs_3039	-	putative binding-protein-dependent transport system protein
2917	 52.56	-2	3207347..3207658	+	103	121595353	-	Ajs_3040	-	hypothetical protein
2918	 61.11	-1	3207833..3208048	-	71	121595354	-	Ajs_3041	-	hypothetical protein
2919	 69.49	0	3208143..3208745	-	200	121595355	-	Ajs_3042	-	hypothetical protein
2920	 67.64	0	3208859..3210085	+	408	121595356	-	Ajs_3043	-	radical SAM domain-containing protein
2921	 59.67	-1	3210200..3213115	+	971	121595357	-	Ajs_3044	-	transposase Tn3 family protein
2922	 59.50	-1	3213209..3213571	+	120	121595358	-	Ajs_3045	-	hypothetical protein
2923	 62.27	0	3214481..3215617	-	378	121595359	-	Ajs_3046	-	LuxR family transcriptional regulator
2924	 59.46	-1	3216346..3217524	-	392	121595360	-	Ajs_3048	-	YeeC-like protein
2925	 59.19	-1	3218129..3219667	+	512	121595361	-	Ajs_3050	-	integrase catalytic subunit
2926	 64.67	0	3219858..3220658	-	266	121595362	-	Ajs_3051	-	IstB ATP binding domain-containing protein
2927	 67.33	0	3220651..3222165	-	504	121595363	-	Ajs_3052	-	integrase catalytic subunit
2928	 66.27	0	3222494..3222991	-	165	121595364	-	Ajs_3054	-	protein tyrosine phosphatase
2929	 65.73	0	3223015..3223335	-	106	121595365	-	Ajs_3055	-	ArsR family transcriptional regulator
2930	 73.00	+1	3223430..3224377	-	315	121595366	-	Ajs_3056	-	lipid A biosynthesis acyltransferase
2931	 70.92	0	3224439..3226154	-	571	121595367	-	Ajs_3057	-	ABC transporter related
2932	 73.48	+1	3226208..3227191	-	327	121595368	-	Ajs_3058	-	diacylglycerol kinase, catalytic region
2933	 66.04	0	3227227..3228342	-	371	121595369	-	Ajs_3059	-	fatty acid desaturase
2934	 70.67	0	3228440..3229213	-	257	121595370	-	Ajs_3060	-	hypothetical protein
2935	 73.95	+1	3229244..3230176	-	310	121595371	-	Ajs_3061	-	hypothetical protein
2936	 71.24	+1	3230173..3231330	-	385	121595372	-	Ajs_3062	-	hypothetical protein
2937	 74.03	+1	3231413..3232336	+	307	121595373	-	Ajs_3063	-	metallophosphoesterase
2938	 68.09	0	3232323..3232814	+	163	121595374	-	Ajs_3064	-	histidine triad (HIT) protein
2939	 68.26	0	3232834..3234024	+	396	121595375	-	Ajs_3065	-	permease YjgP/YjgQ family protein
2940	 70.04	0	3234021..3235088	+	355	121595376	-	Ajs_3066	-	permease YjgP/YjgQ family protein
2941	 71.46	+1	3235085..3236293	+	402	121595377	-	Ajs_3067	-	putative phosphatidyltransferase
2942	 65.87	0	3236300..3237427	+	375	121595378	-	Ajs_3068	-	hypothetical protein
2943	 73.11	+1	3237429..3238235	+	268	121595379	-	Ajs_3069	-	hypothetical protein
2944	 68.06	0	3238221..3239012	-	263	121595380	-	Ajs_3070	-	nucleotidyl transferase
2945	 67.88	0	3239076..3239732	-	218	121595381	-	Ajs_3071	-	4'-phosphopantetheinyl transferase
2946	 70.40	0	3239796..3241109	+	437	121595382	-	Ajs_3072	-	cytochrome P450
2947	 66.51	0	3241129..3243090	+	653	121595383	-	Ajs_3073	-	AMP-dependent synthetase and ligase
2948	 67.99	0	3243316..3245127	+	603	121595384	-	Ajs_3074	-	AMP-dependent synthetase and ligase
2949	 66.67	0	3245147..3245395	+	82	121595385	-	Ajs_3075	-	acyl carrier protein
2950	 68.27	0	3245392..3246573	+	393	121595386	-	Ajs_3076	-	serine palmitoyltransferase
2951	 61.89	0	3246578..3247498	-	306	121595387	-	Ajs_3077	-	hypothetical protein
2952	 70.17	0	3247671..3248555	+	294	121595388	-	Ajs_3078	-	hypothetical protein
2953	 72.13	+1	3248581..3249660	-	359	121595389	-	Ajs_3079	-	nucleoside-diphosphate-sugar epimerase-like protein
2954	 72.85	+1	3249660..3250646	-	328	121595390	-	Ajs_3080	-	NAD-dependent epimerase/dehydratase
2955	 66.34	0	3250745..3251047	+	100	121595391	-	Ajs_3081	-	hypothetical protein
2956	 68.42	0	3251066..3251578	-	170	121595392	-	Ajs_3082	-	CMP/dCMP deaminase, zinc-binding
2957	 56.06	-2	3251642..3251971	-	109	121595393	-	Ajs_3083	-	hypothetical protein
2958	 64.97	0	3254996..3255760	-	254	121595394	-	Ajs_3085	-	IstB ATP binding domain-containing protein
2959	 65.98	0	3255757..3257352	-	531	121595395	-	Ajs_3086	-	integrase catalytic subunit
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.