IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2728	 71.11	0	3016563..3017372	+	269	121595164	-	Ajs_2843	-	uroporphyrinogen-III C-methyltransferase
2729	 66.87	0	3017377..3017877	-	166	121595165	-	Ajs_2844	-	thioesterase superfamily protein
2730	 71.21	+1	3018071..3019237	+	388	121595166	-	Ajs_2845	-	extracellular ligand-binding receptor
2731	 69.00	0	3019308..3020549	+	413	121595167	-	Ajs_2846	-	hypothetical protein
2732	 69.57	0	3020652..3021857	+	401	121595168	-	Ajs_2847	-	NnrS family protein
2733	 65.00	0	3021928..3022227	+	99	121595169	-	Ajs_2848	-	hypothetical protein
2734	 67.92	0	3022295..3022852	-	185	121595170	-	Ajs_2849	-	hypothetical protein
2735	 66.46	0	3022849..3023328	-	159	121595171	-	Ajs_2850	-	NifU family SUF system FeS assembly protein
2736	 70.54	0	3023325..3024590	-	421	121595172	-	Ajs_2851	-	aminotransferase, class V
2737	 72.60	+1	3024583..3025830	-	415	121595173	-	Ajs_2852	-	SufBD protein
2738	 68.74	0	3025835..3026605	-	256	121595174	-	Ajs_2853	-	FeS assembly ATPase SufC
2739	 65.93	0	3026686..3028179	-	497	121595175	-	Ajs_2854	-	cysteine desulfurase activator complex subunit SufB
2740	 74.44	+1	3028332..3029129	-	265	121595176	-	Ajs_2855	-	ArsR family transcriptional regulator
2741	 69.49	0	3029160..3029513	+	117	121595177	-	Ajs_2856	-	NIPSNAP family protein
2742	 71.60	+1	3029510..3029914	+	134	121595178	-	Ajs_2857	-	antibiotic biosynthesis monooxygenase
2743	 60.09	-1	3030044..3030256	+	70	121595179	rpsU	Ajs_2858	-	30S ribosomal protein S21
2744	 65.15	0	3030354..3030815	+	153	121595180	-	Ajs_2859	-	GatB/Yqey domain-containing protein
2745	 67.21	0	3031155..3032249	+	364	121595181	-	Ajs_2860	-	tartrate dehydrogenase
2746	 66.30	0	3032454..3032726	+	90	121595182	-	Ajs_2861	-	hypothetical protein
2747	 69.36	0	3032723..3033724	+	333	121595183	-	Ajs_2862	-	cation diffusion facilitator family transporter
2748	 69.30	0	3033736..3034380	+	214	121595184	-	Ajs_2863	-	hypothetical protein
2749	 72.45	+1	3034406..3034837	+	143	121595185	-	Ajs_2864	-	glutathione-dependent formaldehyde-activating, GFA
2750	 61.39	-1	3035182..3036261	+	359	121595186	-	Ajs_2865	-	integrase catalytic subunit
2751	 63.27	0	3036370..3037458	+	362	121595187	-	Ajs_2866	-	transposase, IS4 family protein
2752	 70.32	0	3037716..3038591	+	291	121595188	-	Ajs_2867	-	glutamate racemase
2753	 68.02	0	3038659..3039174	-	171	121595189	-	Ajs_2868	-	hypothetical protein
2754	 69.09	0	3039239..3040228	-	329	121595190	-	Ajs_2869	-	hypothetical protein
2755	 71.06	0	3040276..3041277	-	333	121595191	-	Ajs_2870	-	hypothetical protein
2756	 70.43	0	3041314..3042297	-	327	121595192	-	Ajs_2871	-	hydroxymethylglutaryl-CoA lyase
2757	 70.60	0	3042294..3043514	-	406	121595193	-	Ajs_2872	-	L-carnitine dehydratase/bile acid-inducible protein F
2758	 71.56	+1	3043635..3044534	+	299	121595194	-	Ajs_2873	-	LysR family transcriptional regulator
2759	 66.85	0	3044531..3045643	+	370	121595195	-	Ajs_2874	-	hypothetical protein
2760	 61.26	-1	3045810..3046364	+	184	121595196	-	Ajs_2875	-	elongation factor P
2761	 67.85	0	3046479..3046985	-	168	121595197	-	Ajs_2876	-	hypothetical protein
2762	 69.20	0	3047085..3049172	-	695	121595198	-	Ajs_2877	-	Na+/solute symporter
2763	 64.78	0	3049165..3049482	-	105	121595199	-	Ajs_2878	-	hypothetical protein
2764	 66.04	0	3049503..3051893	-	796	121595200	-	Ajs_2879	-	phosphoenolpyruvate synthase
2765	 64.74	0	3052117..3052947	+	276	121595201	-	Ajs_2880	-	hypothetical protein
2766	 65.83	0	3053048..3054604	-	518	121595202	-	Ajs_2881	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2767	 61.88	0	3054710..3055273	-	187	121595203	-	Ajs_2882	-	alkyl hydroperoxide reductase subunit C
2768	 59.75	-1	3055511..3055987	+	158	121595204	-	Ajs_2883	-	bacterioferritin
2769	 62.73	0	3056292..3056621	+	109	121595205	-	Ajs_2884	-	flagellar transcriptional activator, FlhD subunit
2770	 63.15	0	3056663..3057202	+	179	121595206	-	Ajs_2885	-	transcriptional activator FlhC
2771	 70.51	0	3057284..3057856	-	190	121595207	-	Ajs_2886	-	hypothetical protein
2772	 71.71	+1	3057853..3058467	-	204	121595208	-	Ajs_2887	-	hypothetical protein
2773	 70.56	0	3058565..3060748	-	727	121595209	-	Ajs_2888	-	YccS/YhfK family integral membrane protein
2774	 69.47	0	3060759..3063608	-	949	121595210	-	Ajs_2889	-	phosphoenolpyruvate carboxylase
2775	 72.90	+1	3063703..3064665	+	320	121595211	-	Ajs_2890	-	porphobilinogen deaminase
2776	 69.47	0	3064668..3065486	+	272	121595212	-	Ajs_2891	-	uroporphyrinogen-III synthase
2777	 73.17	+1	3065476..3066552	+	358	121595213	-	Ajs_2892	-	protein of unknown function DUF513, hemX
2778	 70.40	0	3066576..3067859	+	427	121595214	-	Ajs_2893	-	HemY domain-containing protein
2779	 66.98	0	3067876..3068838	-	320	121595215	-	Ajs_2894	-	transposase IS116/IS110/IS902 family protein
2780	 65.70	0	3069221..3069841	+	206	121595216	-	Ajs_2895	-	glyoxalase/bleomycin resistance protein/dioxygenase
2781	 65.98	0	3069914..3072844	+	976	121595217	-	Ajs_2896	-	valyl-tRNA synthetase
2782	 67.34	0	3072923..3073810	+	295	121595218	-	Ajs_2897	-	UDP-glucose pyrophosphorylase
2783	 64.47	0	3073922..3074149	-	75	121595219	-	Ajs_2898	-	SirA family protein
2784	 66.31	0	3074155..3074718	-	187	121595220	-	Ajs_2899	-	NUDIX hydrolase
2785	 65.56	0	3074834..3075739	-	301	121595221	cysM	Ajs_2900	-	cysteine synthase B
2786	 63.37	0	3076351..3076593	-	80	121595222	-	Ajs_2901	-	hypothetical protein
2787	 67.85	0	3076590..3077852	-	420	121595223	-	Ajs_2902	-	conjugation TrbI family protein
2788	 65.44	0	3077854..3078834	-	326	121595224	-	Ajs_2903	-	conjugal transfer protein TrbG/VirB9/CagX
2789	 66.52	0	3078831..3079535	-	234	121595225	-	Ajs_2904	-	conjugal transfer protein
2790	 66.82	0	3079554..3080888	-	444	121595226	-	Ajs_2905	-	TrbL/VirB6 plasmid conjugal transfer protein
2791	 68.83	0	3080885..3081208	-	107	121595227	-	Ajs_2906	-	putative lipoprotein
2792	 65.71	0	3081220..3081948	-	242	121595228	-	Ajs_2907	-	putative conjugal transfer TrbJ signal peptide protein
2793	 67.00	0	3081945..3084380	-	811	121595229	-	Ajs_2908	-	AAA ATPase
2794	 65.93	0	3084390..3084662	-	90	121595230	-	Ajs_2909	-	putative conjugal transfer TrbD transmembrane protein
2795	 64.81	0	3084659..3085036	-	125	121595231	-	Ajs_2910	-	conjugal transfer protein TrbC
2796	 67.83	0	3085033..3086067	-	344	121595232	-	Ajs_2911	-	type II secretion system protein E
2797	 65.55	0	3086064..3086510	-	148	121595233	-	Ajs_2912	-	CopG/DNA-binding domain-containing protein
2798	 66.32	0	3086507..3088504	-	665	121595234	-	Ajs_2913	-	TRAG family protein
2799	 58.78	-1	3088740..3089018	-	92	121595235	-	Ajs_2915	-	putative lipoprotein
2800	 65.02	0	3089151..3090665	-	504	121595236	-	Ajs_2916	-	transposase IS66
2801	 66.03	0	3090746..3091057	-	103	121595237	-	Ajs_2917	-	IS66 Orf2 family protein
2802	 66.23	0	3091078..3091530	-	150	121595238	-	Ajs_2918	-	transposase IS3/IS911 family protein
2803	 60.49	-1	3091527..3092432	-	301	121595239	-	Ajs_2919	-	LysR family transcriptional regulator
2804	 49.06	-2	3092469..3092786	-	105	121595240	-	Ajs_2920	-	hypothetical protein
2805	 61.93	0	3092812..3093846	-	344	121595241	-	Ajs_2921	-	secretion protein HlyD family protein
2806	 66.98	0	3094607..3095569	-	320	121595242	-	Ajs_2923	-	transposase IS116/IS110/IS902 family protein
2807	 64.45	0	3096608..3098143	-	511	121595243	-	Ajs_2924	-	RND efflux system outer membrane lipoprotein
2808	 60.00	-1	3098244..3099023	+	259	121595244	-	Ajs_2925	-	TetR family transcriptional regulator
2809	 52.64	-2	3099023..3099514	+	163	121595245	-	Ajs_2926	-	MarR family transcriptional regulator
2810	 63.96	0	3099511..3100470	+	319	121595246	-	Ajs_2927	-	transposase, IS4 family protein
2811	 69.12	0	3103047..3103658	-	203	121595247	-	Ajs_2929	-	TraF peptidase
2812	 70.70	0	3103655..3104200	-	181	121595248	-	Ajs_2930	-	hypothetical protein
2813	 66.30	0	3104197..3104472	-	91	121595249	-	Ajs_2931	-	hypothetical protein
2814	 68.54	0	3104469..3105107	-	212	121595250	-	Ajs_2932	-	cobyrinic acid a,c-diamide synthase
2815	 67.48	0	3105361..3106218	-	285	121595251	-	Ajs_2933	-	putative replication initiator and transcription repressor protein
2816	 68.85	0	3106245..3106565	-	106	121595252	-	Ajs_2934	-	hypothetical protein
2817	 70.40	0	3106634..3107383	-	249	121595253	-	Ajs_2935	-	hypothetical protein
2818	 66.95	0	3107725..3108072	-	115	121595254	-	Ajs_2936	-	putative lipoprotein
2819	 58.16	-1	3108295..3108588	+	97	121595255	-	Ajs_2937	-	helix-turn-helix domain-containing protein
2820	 55.84	-2	3108818..3109861	+	347	121595256	-	Ajs_2938	-	hypothetical protein
2821	 64.44	0	3110204..3110518	-	104	121595257	-	Ajs_2939	-	hypothetical protein
2822	 56.25	-2	3111327..3112142	-	271	121595258	-	Ajs_2941	-	hypothetical protein
2823	 71.90	+1	3112382..3112591	-	69	121595259	-	Ajs_2942	-	hypothetical protein
2824	 67.59	0	3112655..3114706	-	683	121595260	-	Ajs_2943	-	nuclease
2825	 63.41	0	3114781..3115608	-	275	121595261	-	Ajs_2944	-	hypothetical protein
2826	 59.84	-1	3116240..3116488	-	82	121595262	-	Ajs_2946	-	hypothetical protein
2827	 57.85	-1	3116573..3117457	+	294	121595263	-	Ajs_2947	-	ATPase involved in chromosome partitioning-like protein
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.