IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2304	 61.17	-1	2551244..2551861	-	205	121594740	-	Ajs_2399	-	translation initiation factor 3
2305	 61.04	-1	2551921..2553840	-	639	121594741	-	Ajs_2400	-	Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
2306	 62.01	0	2554123..2555454	-	443	121594742	-	Ajs_2401	-	isocitrate lyase
2307	 63.67	0	2555728..2556729	+	333	121594743	-	Ajs_2402	-	hypothetical protein
2308	 68.05	0	2556739..2557245	-	168	121594744	-	Ajs_2403	-	ribonuclease activity regulator protein RraA
2309	 62.89	0	2557469..2557759	+	96	121594745	-	Ajs_2404	-	SWIB/MDM2 domain-containing protein
2310	 63.00	0	2557946..2558218	+	90	121594746	-	Ajs_2405	-	BFD/(2Fe-2S)-binding domain-containing protein
2311	 69.66	0	2558326..2559027	+	233	121594747	-	Ajs_2406	-	TonB family protein
2312	 64.99	0	2559045..2559761	+	238	121594748	-	Ajs_2407	-	MotA/TolQ/ExbB proton channel
2313	 65.69	0	2559768..2560178	+	136	121594749	-	Ajs_2408	-	biopolymer transport protein ExbD/TolR
2314	 68.10	0	2560375..2560584	+	69	121594750	-	Ajs_2409	-	hypothetical protein
2315	 68.38	0	2560806..2561213	-	135	121594751	-	Ajs_2410	-	hypothetical protein
2316	 65.66	0	2561441..2562133	+	230	121594752	-	Ajs_2411	-	hypothetical protein
2317	 70.28	0	2562247..2562633	+	128	121594753	-	Ajs_2412	-	hypothetical protein
2318	 67.63	0	2562710..2564158	-	482	121594754	rumA	Ajs_2413	-	23S rRNA 5-methyluridine methyltransferase
2319	 67.58	0	2564208..2564534	-	108	121594755	-	Ajs_2414	-	hypothetical protein
2320	 66.82	0	2564563..2565231	+	222	121594756	-	Ajs_2415	-	ECF subfamily RNA polymerase sigma-24 factor
2321	 69.46	0	2565348..2566169	+	273	121594757	-	Ajs_2416	-	hypothetical protein
2322	 66.88	0	2566306..2566785	+	159	121594758	-	Ajs_2417	-	hypothetical protein
2323	 61.39	-1	2566862..2567392	+	176	121594759	-	Ajs_2418	-	hypothetical protein
2324	 63.33	0	2567341..2567820	-	159	121594760	-	Ajs_2419	-	AsnC family transcriptional regulator
2325	 71.87	+1	2568027..2571602	+	1191	121594761	-	Ajs_2420	-	delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase
2326	 72.28	+1	2571668..2572273	-	201	121594762	-	Ajs_2421	-	2',5' RNA ligase
2327	 69.48	0	2572688..2573470	+	260	121594763	-	Ajs_2422	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2328	 72.30	+1	2573488..2574534	+	348	121594764	-	Ajs_2423	-	polysulphide reductase, NrfD
2329	 69.05	0	2574635..2577829	+	1064	121594765	-	Ajs_2424	-	molydopterin dinucleotide-binding region
2330	 44.30	-2	2578382..2579275	+	297	121594766	-	Ajs_2425	-	hypothetical protein
2331	 46.99	-2	2579272..2581842	+	856	121594767	-	Ajs_2426	-	DEAD/DEAH box helicase domain-containing protein
2332	 48.00	-2	2581835..2582134	+	99	121594768	-	Ajs_2427	-	hypothetical protein
2333	 73.36	+1	2582635..2585202	-	855	121594769	-	Ajs_2428	-	helicase c2
2334	 71.95	+1	2585199..2586884	-	561	121594770	-	Ajs_2429	-	hypothetical protein
2335	 61.58	-1	2586950..2587951	-	333	121594771	-	Ajs_2430	-	hypothetical protein
2336	 69.03	0	2588090..2588767	+	225	121594772	-	Ajs_2431	-	two component transcriptional regulator
2337	 69.68	0	2588764..2590224	+	486	121594773	-	Ajs_2432	-	integral membrane sensor signal transduction histidine kinase
2338	 71.70	+1	2590232..2591065	+	277	121594774	-	Ajs_2433	-	redoxin domain-containing protein
2339	 67.88	0	2591104..2592006	-	300	121594775	-	Ajs_2434	-	beta-lactamase domain-containing protein
2340	 64.20	0	2592114..2592437	+	107	121594776	-	Ajs_2435	-	ArsR family transcriptional regulator
2341	 70.05	0	2592442..2592885	+	147	121594777	-	Ajs_2436	-	protein of unknown function DUF395, YeeE/YedE
2342	 66.43	0	2592908..2593330	+	140	121594778	-	Ajs_2437	-	protein of unknown function DUF395, YeeE/YedE
2343	 66.51	0	2593428..2594051	+	207	121594779	-	Ajs_2438	-	hypothetical protein
2344	 68.98	0	2594056..2594703	-	215	121594780	-	Ajs_2439	-	hypothetical protein
2345	 62.52	0	2594959..2595657	-	232	121594781	-	Ajs_2440	-	negative transcriptional regulator
2346	 63.40	0	2595829..2596410	-	193	121594782	-	Ajs_2441	-	TetR family transcriptional regulator
2347	 63.28	0	2596517..2597845	+	442	121594783	-	Ajs_2442	-	beta-ketoacyl synthase
2348	 65.98	0	2597939..2599534	+	531	121594784	-	Ajs_2443	-	integrase catalytic subunit
2349	 64.97	0	2599531..2600295	+	254	121594785	-	Ajs_2444	-	IstB ATP binding domain-containing protein
2350	 55.10	-2	2600249..2600689	-	146	121594786	-	Ajs_2445	-	hypothetical protein
2351	 53.03	-2	2600829..2601488	-	219	121594787	-	Ajs_2446	-	hypothetical protein
2352	 53.57	-2	2601481..2602572	-	363	121594788	-	Ajs_2447	-	hypothetical protein
2353	 54.03	-2	2602657..2603685	-	342	121594789	-	Ajs_2448	-	hypothetical protein
2354	 56.26	-2	2603815..2604804	-	329	121594790	-	Ajs_2449	-	hypothetical protein
2355	 57.41	-1	2604823..2605200	-	125	121594791	-	Ajs_2450	-	hypothetical protein
2356	 57.51	-1	2605665..2606975	+	436	121594792	-	Ajs_2451	-	hypothetical protein
2357	 56.34	-2	2607034..2608137	-	367	121594793	-	Ajs_2452	-	hypothetical protein
2358	 58.21	-1	2608143..2609372	-	409	121594794	-	Ajs_2453	-	helix-turn-helix domain-containing protein
2359	 54.25	-2	2609369..2609674	-	101	121594795	-	Ajs_2454	-	hypothetical protein
2360	 65.02	0	2609863..2611377	-	504	121594796	-	Ajs_2455	-	transposase IS66
2361	 66.03	0	2611458..2611769	-	103	121594797	-	Ajs_2456	-	IS66 Orf2 family protein
2362	 66.23	0	2611790..2612242	-	150	121594798	-	Ajs_2457	-	transposase IS3/IS911 family protein
2363	 62.86	0	2612889..2614649	-	586	121594799	-	Ajs_2458	-	UvrD/REP helicase
2364	 63.92	0	2614646..2616466	-	606	121594800	-	Ajs_2459	-	hypothetical protein
2365	 55.23	-2	2616693..2617934	-	413	121594801	-	Ajs_2460	-	phage integrase family protein
2366	 59.73	-1	2618531..2619208	-	225	121594802	-	Ajs_2461	-	phosphoglycolate phosphatase
2367	 61.76	0	2619205..2619918	-	237	121594803	-	Ajs_2462	-	3-demethylubiquinone-9 3-methyltransferase
2368	 60.27	-1	2619998..2620654	-	218	121594804	-	Ajs_2463	-	OmpA/MotB domain-containing protein
2369	 64.57	0	2620848..2623514	+	888	121594805	-	Ajs_2464	-	DNA gyrase subunit A
2370	 67.47	0	2623578..2624693	+	371	121594806	-	Ajs_2465	-	phosphoserine aminotransferase
2371	 69.09	0	2624810..2625925	+	371	121594807	-	Ajs_2466	-	chorismate mutase / prephenate dehydratase
2372	 68.93	0	2625935..2626819	+	294	121594808	-	Ajs_2467	-	prephenate dehydrogenase
2373	 68.79	0	2626819..2628840	+	673	121594809	-	Ajs_2468	-	bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase
2374	 62.99	0	2629014..2630699	+	561	121594810	rpsA	Ajs_2469	-	30S ribosomal protein S1
2375	 66.03	0	2630821..2631132	+	103	121594811	-	Ajs_2470	-	integration host factor, beta subunit
2376	 69.67	0	2631262..2631594	+	110	121594812	-	Ajs_2471	-	hypothetical protein
2377	 70.38	0	2631584..2632741	+	385	121594813	-	Ajs_2472	-	hypothetical protein
2378	 73.62	+1	2632750..2633094	+	114	121594814	-	Ajs_2473	-	hypothetical protein
2379	 68.09	0	2633206..2636160	+	984	121594815	-	Ajs_2474	-	putative monovalent cation/H+ antiporter subunit A
2380	 65.57	0	2636160..2636525	+	121	121594816	-	Ajs_2475	-	putative monovalent cation/H+ antiporter subunit C
2381	 69.37	0	2636522..2638258	+	578	121594817	-	Ajs_2476	-	putative monovalent cation/H+ antiporter subunit D
2382	 64.63	0	2638255..2638746	+	163	121594818	-	Ajs_2477	-	putative monovalent cation/H+ antiporter subunit E
2383	 64.18	0	2638743..2639024	+	93	121594819	-	Ajs_2478	-	multiple resistance and pH regulation protein F
2384	 67.75	0	2639021..2639389	+	122	121594820	-	Ajs_2479	-	Na+/H+ antiporter subunit
2385	 68.88	0	2639460..2643212	-	1250	121594821	-	Ajs_2480	-	5-oxoprolinase (ATP-hydrolyzing)
2386	 70.07	0	2643299..2645122	+	607	121594822	-	Ajs_2481	-	hypothetical protein
2387	 68.39	0	2645168..2645746	-	192	121594823	-	Ajs_2482	-	putative transcriptional regulator
2388	 66.16	0	2645950..2646927	+	325	121594824	-	Ajs_2483	-	TRAP dicarboxylate transporter- DctP subunit
2389	 69.02	0	2646965..2647474	+	169	121594825	-	Ajs_2484	-	tripartite ATP-independent periplasmic transporter DctQ
2390	 67.20	0	2647490..2648794	+	434	121594826	-	Ajs_2485	-	TRAP dicarboxylate transporter, DctM subunit
2391	 71.46	+1	2648837..2649232	+	131	121594827	-	Ajs_2486	-	camphor resistance protein CrcB
2392	 65.62	0	2649364..2650227	+	287	121594828	-	Ajs_2487	-	hypothetical protein
2393	 72.39	+1	2650282..2651469	-	395	121594829	-	Ajs_2488	-	major facilitator superfamily transporter
2394	 68.61	0	2651471..2653171	-	566	121594830	-	Ajs_2489	-	hypothetical protein
2395	 68.60	0	2653235..2654215	-	326	121594831	-	Ajs_2490	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
2396	 66.24	0	2654295..2655710	-	471	121594832	-	Ajs_2491	-	putative transmembrane protein
2397	 64.91	0	2655775..2656971	-	398	121594833	-	Ajs_2492	-	nicotinate phosphoribosyltransferase
2398	 66.46	0	2657151..2657639	-	162	121594834	-	Ajs_2493	-	thioesterase superfamily protein
2399	 65.07	0	2657909..2658472	+	187	121594835	-	Ajs_2494	-	phasin family protein
2400	 72.50	+1	2660419..2661309	+	296	121594836	-	Ajs_2496	-	peptidase M23B
2401	 73.89	+1	2661306..2661956	+	216	121594837	-	Ajs_2497	-	ribosomal large subunit pseudouridine synthase E
2402	 75.12	+1	2662059..2663099	+	346	121594838	-	Ajs_2498	-	Sel1 domain-containing protein
2403	 72.74	+1	2663161..2663835	-	224	121594839	-	Ajs_2499	-	hypothetical protein
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.