IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2272	 65.96	0	2517055..2517762	-	235	121594708	-	Ajs_2367	-	two component transcriptional regulator
2273	 62.39	0	2517779..2518480	-	233	121594709	-	Ajs_2368	-	phosphate uptake regulator, PhoU
2274	 61.30	-1	2518495..2519277	-	260	121594710	-	Ajs_2369	-	phosphate ABC transporter, ATPase subunit
2275	 63.49	0	2519300..2520181	-	293	121594711	pstA	Ajs_2370	-	phosphate transporter permease subunit
2276	 63.51	0	2520178..2521191	-	337	121594712	-	Ajs_2371	-	phosphate ABC transporter, inner membrane subunit PstC
2277	 61.00	-1	2521270..2522310	-	346	121594713	-	Ajs_2372	-	phosphate ABC transporter, periplasmic phosphate-binding protein
2278	 63.82	0	2522511..2523002	+	163	121594714	-	Ajs_2373	-	beta-Ig-H3/fasciclin
2279	 65.96	0	2523034..2524167	+	377	121594715	-	Ajs_2374	-	twin-arginine translocation pathway signal
2280	 64.10	0	2524252..2525733	+	493	121594716	-	Ajs_2375	-	Ppx/GppA phosphatase
2281	 60.46	-1	2525799..2526233	+	144	121594717	-	Ajs_2376	-	hypothetical protein
2282	 64.09	0	2526285..2526749	-	154	121594718	-	Ajs_2377	-	phosphohistidine phosphatase, SixA
2283	 63.67	0	2526746..2528917	-	723	121594719	-	Ajs_2378	-	polyphosphate kinase
2284	 64.99	0	2529033..2529869	-	278	121594720	-	Ajs_2379	-	ornithine-acyl[acyl carrier protein] N-acyltransferase
2285	 65.17	0	2530052..2532322	+	756	121594721	-	Ajs_2380	-	diguanylate cyclase/phosphodiesterase
2286	 66.82	0	2532390..2533724	-	444	121594722	-	Ajs_2381	-	phosphoglucosamine mutase
2287	 66.55	0	2533737..2534588	-	283	121594723	-	Ajs_2382	-	dihydropteroate synthase
2288	 62.81	0	2534660..2536579	-	639	121594724	-	Ajs_2383	-	FtsH peptidase
2289	 61.76	0	2536723..2537436	-	237	121594725	-	Ajs_2384	-	ribosomal RNA methyltransferase RrmJ/FtsJ
2290	 62.24	0	2537463..2537936	+	157	121594726	-	Ajs_2385	-	hypothetical protein
2291	 63.65	0	2537948..2538709	+	253	121594727	-	Ajs_2386	-	hypothetical protein
2292	 65.99	0	2538767..2539648	-	293	121594728	-	Ajs_2387	-	hypothetical protein
2293	 62.32	0	2539655..2540068	-	137	121594729	-	Ajs_2388	-	hypothetical protein
2294	 66.25	0	2540080..2540556	-	158	121594730	-	Ajs_2389	-	transcription elongation factor GreA
2295	 64.45	0	2540684..2543845	-	1053	121594731	-	Ajs_2390	-	carbamoyl-phosphate synthase large subunit
2296	 62.69	0	2543946..2544347	-	133	121594732	-	Ajs_2391	-	hypothetical protein
2297	 64.79	0	2544369..2545541	-	390	121594733	-	Ajs_2392	-	carbamoyl-phosphate synthase small subunit
2298	 61.31	-1	2545884..2546312	-	142	121594734	-	Ajs_2393	-	MerR family transcriptional regulator
2299	 61.54	-1	2546413..2546763	-	116	121594735	-	Ajs_2394	-	histone family protein DNA-binding protein
2300	 67.28	0	2546760..2549204	-	814	121594736	pheT	Ajs_2395	-	phenylalanyl-tRNA synthetase subunit beta
2301	 66.29	0	2549326..2550378	-	350	121594737	-	Ajs_2396	-	phenylalanyl-tRNA synthetase, alpha subunit
2302	 62.78	0	2550481..2550840	-	119	121594738	rplT	Ajs_2397	-	50S ribosomal protein L20
2303	 56.86	-2	2550867..2551070	-	67	121594739	-	Ajs_2398	-	50S ribosomal protein L35P
2304	 61.17	-1	2551244..2551861	-	205	121594740	-	Ajs_2399	-	translation initiation factor 3
2305	 61.04	-1	2551921..2553840	-	639	121594741	-	Ajs_2400	-	Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
2306	 62.01	0	2554123..2555454	-	443	121594742	-	Ajs_2401	-	isocitrate lyase
2307	 63.67	0	2555728..2556729	+	333	121594743	-	Ajs_2402	-	hypothetical protein
2308	 68.05	0	2556739..2557245	-	168	121594744	-	Ajs_2403	-	ribonuclease activity regulator protein RraA
2309	 62.89	0	2557469..2557759	+	96	121594745	-	Ajs_2404	-	SWIB/MDM2 domain-containing protein
2310	 63.00	0	2557946..2558218	+	90	121594746	-	Ajs_2405	-	BFD/(2Fe-2S)-binding domain-containing protein
2311	 69.66	0	2558326..2559027	+	233	121594747	-	Ajs_2406	-	TonB family protein
2312	 64.99	0	2559045..2559761	+	238	121594748	-	Ajs_2407	-	MotA/TolQ/ExbB proton channel
2313	 65.69	0	2559768..2560178	+	136	121594749	-	Ajs_2408	-	biopolymer transport protein ExbD/TolR
2314	 68.10	0	2560375..2560584	+	69	121594750	-	Ajs_2409	-	hypothetical protein
2315	 68.38	0	2560806..2561213	-	135	121594751	-	Ajs_2410	-	hypothetical protein
2316	 65.66	0	2561441..2562133	+	230	121594752	-	Ajs_2411	-	hypothetical protein
2317	 70.28	0	2562247..2562633	+	128	121594753	-	Ajs_2412	-	hypothetical protein
2318	 67.63	0	2562710..2564158	-	482	121594754	rumA	Ajs_2413	-	23S rRNA 5-methyluridine methyltransferase
2319	 67.58	0	2564208..2564534	-	108	121594755	-	Ajs_2414	-	hypothetical protein
2320	 66.82	0	2564563..2565231	+	222	121594756	-	Ajs_2415	-	ECF subfamily RNA polymerase sigma-24 factor
2321	 69.46	0	2565348..2566169	+	273	121594757	-	Ajs_2416	-	hypothetical protein
2322	 66.88	0	2566306..2566785	+	159	121594758	-	Ajs_2417	-	hypothetical protein
2323	 61.39	-1	2566862..2567392	+	176	121594759	-	Ajs_2418	-	hypothetical protein
2324	 63.33	0	2567341..2567820	-	159	121594760	-	Ajs_2419	-	AsnC family transcriptional regulator
2325	 71.87	+1	2568027..2571602	+	1191	121594761	-	Ajs_2420	-	delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase
2326	 72.28	+1	2571668..2572273	-	201	121594762	-	Ajs_2421	-	2',5' RNA ligase
2327	 69.48	0	2572688..2573470	+	260	121594763	-	Ajs_2422	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2328	 72.30	+1	2573488..2574534	+	348	121594764	-	Ajs_2423	-	polysulphide reductase, NrfD
2329	 69.05	0	2574635..2577829	+	1064	121594765	-	Ajs_2424	-	molydopterin dinucleotide-binding region
2330	 44.30	-2	2578382..2579275	+	297	121594766	-	Ajs_2425	-	hypothetical protein
2331	 46.99	-2	2579272..2581842	+	856	121594767	-	Ajs_2426	-	DEAD/DEAH box helicase domain-containing protein
2332	 48.00	-2	2581835..2582134	+	99	121594768	-	Ajs_2427	-	hypothetical protein
2333	 73.36	+1	2582635..2585202	-	855	121594769	-	Ajs_2428	-	helicase c2
2334	 71.95	+1	2585199..2586884	-	561	121594770	-	Ajs_2429	-	hypothetical protein
2335	 61.58	-1	2586950..2587951	-	333	121594771	-	Ajs_2430	-	hypothetical protein
2336	 69.03	0	2588090..2588767	+	225	121594772	-	Ajs_2431	-	two component transcriptional regulator
2337	 69.68	0	2588764..2590224	+	486	121594773	-	Ajs_2432	-	integral membrane sensor signal transduction histidine kinase
2338	 71.70	+1	2590232..2591065	+	277	121594774	-	Ajs_2433	-	redoxin domain-containing protein
2339	 67.88	0	2591104..2592006	-	300	121594775	-	Ajs_2434	-	beta-lactamase domain-containing protein
2340	 64.20	0	2592114..2592437	+	107	121594776	-	Ajs_2435	-	ArsR family transcriptional regulator
2341	 70.05	0	2592442..2592885	+	147	121594777	-	Ajs_2436	-	protein of unknown function DUF395, YeeE/YedE
2342	 66.43	0	2592908..2593330	+	140	121594778	-	Ajs_2437	-	protein of unknown function DUF395, YeeE/YedE
2343	 66.51	0	2593428..2594051	+	207	121594779	-	Ajs_2438	-	hypothetical protein
2344	 68.98	0	2594056..2594703	-	215	121594780	-	Ajs_2439	-	hypothetical protein
2345	 62.52	0	2594959..2595657	-	232	121594781	-	Ajs_2440	-	negative transcriptional regulator
2346	 63.40	0	2595829..2596410	-	193	121594782	-	Ajs_2441	-	TetR family transcriptional regulator
2347	 63.28	0	2596517..2597845	+	442	121594783	-	Ajs_2442	-	beta-ketoacyl synthase
2348	 65.98	0	2597939..2599534	+	531	121594784	-	Ajs_2443	-	integrase catalytic subunit
2349	 64.97	0	2599531..2600295	+	254	121594785	-	Ajs_2444	-	IstB ATP binding domain-containing protein
2350	 55.10	-2	2600249..2600689	-	146	121594786	-	Ajs_2445	-	hypothetical protein
2351	 53.03	-2	2600829..2601488	-	219	121594787	-	Ajs_2446	-	hypothetical protein
2352	 53.57	-2	2601481..2602572	-	363	121594788	-	Ajs_2447	-	hypothetical protein
2353	 54.03	-2	2602657..2603685	-	342	121594789	-	Ajs_2448	-	hypothetical protein
2354	 56.26	-2	2603815..2604804	-	329	121594790	-	Ajs_2449	-	hypothetical protein
2355	 57.41	-1	2604823..2605200	-	125	121594791	-	Ajs_2450	-	hypothetical protein
2356	 57.51	-1	2605665..2606975	+	436	121594792	-	Ajs_2451	-	hypothetical protein
2357	 56.34	-2	2607034..2608137	-	367	121594793	-	Ajs_2452	-	hypothetical protein
2358	 58.21	-1	2608143..2609372	-	409	121594794	-	Ajs_2453	-	helix-turn-helix domain-containing protein
2359	 54.25	-2	2609369..2609674	-	101	121594795	-	Ajs_2454	-	hypothetical protein
2360	 65.02	0	2609863..2611377	-	504	121594796	-	Ajs_2455	-	transposase IS66
2361	 66.03	0	2611458..2611769	-	103	121594797	-	Ajs_2456	-	IS66 Orf2 family protein
2362	 66.23	0	2611790..2612242	-	150	121594798	-	Ajs_2457	-	transposase IS3/IS911 family protein
2363	 62.86	0	2612889..2614649	-	586	121594799	-	Ajs_2458	-	UvrD/REP helicase
2364	 63.92	0	2614646..2616466	-	606	121594800	-	Ajs_2459	-	hypothetical protein
2365	 55.23	-2	2616693..2617934	-	413	121594801	-	Ajs_2460	-	phage integrase family protein
2366	 59.73	-1	2618531..2619208	-	225	121594802	-	Ajs_2461	-	phosphoglycolate phosphatase
2367	 61.76	0	2619205..2619918	-	237	121594803	-	Ajs_2462	-	3-demethylubiquinone-9 3-methyltransferase
2368	 60.27	-1	2619998..2620654	-	218	121594804	-	Ajs_2463	-	OmpA/MotB domain-containing protein
2369	 64.57	0	2620848..2623514	+	888	121594805	-	Ajs_2464	-	DNA gyrase subunit A
2370	 67.47	0	2623578..2624693	+	371	121594806	-	Ajs_2465	-	phosphoserine aminotransferase
2371	 69.09	0	2624810..2625925	+	371	121594807	-	Ajs_2466	-	chorismate mutase / prephenate dehydratase
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.