IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2236	 72.39	+1	2471629..2472030	+	133	121594672	-	Ajs_2330	-	hypothetical protein
2237	 72.39	+1	2474422..2475975	+	517	121594673	-	Ajs_2332	-	PepSY-associated TM helix domain-containing protein
2238	 72.17	+1	2476001..2476672	+	223	121594674	-	Ajs_2333	-	glutaredoxin
2239	 64.00	0	2476759..2477283	-	174	121594675	-	Ajs_2334	-	disulphide bond formation protein DsbB
2240	 66.93	0	2477346..2478473	-	375	121594676	-	Ajs_2335	-	sulfate ABC transporter, ATPase subunit
2241	 67.76	0	2478485..2479396	-	303	121594677	-	Ajs_2336	-	sulfate ABC transporter, inner membrane subunit CysW
2242	 63.50	0	2479393..2480244	-	283	121594678	-	Ajs_2337	-	sulfate ABC transporter, inner membrane subunit CysT
2243	 64.68	0	2480392..2481399	-	335	121594679	-	Ajs_2338	-	sulfate ABC transporter, periplasmic sulfate-binding protein
2244	 71.59	+1	2481680..2482633	-	317	121594680	-	Ajs_2339	-	LysR family transcriptional regulator
2245	 69.43	0	2482761..2483411	+	216	121594681	-	Ajs_2340	-	(Acyl-carrier-protein) phosphodiesterase
2246	 65.94	0	2483535..2484086	-	183	121594682	-	Ajs_2341	-	NADPH-dependent FMN reductase
2247	 65.04	0	2484253..2485053	-	266	121594683	-	Ajs_2342	-	YaeC family lipoprotein
2248	 71.27	+1	2485258..2486364	-	368	121594684	-	Ajs_2343	-	hypothetical protein
2249	 67.87	0	2486526..2487191	-	221	121594685	-	Ajs_2344	-	binding-protein-dependent transport systems inner membrane component
2250	 68.86	0	2487202..2488248	-	348	121594686	-	Ajs_2345	-	ABC transporter related
2251	 69.26	0	2488789..2490021	+	410	121594687	-	Ajs_2346	-	major facilitator superfamily transporter
2252	 67.16	0	2490031..2490438	-	135	121594688	-	Ajs_2347	-	membrane protein-like protein
2253	 72.08	+1	2490503..2491093	-	196	121594689	recR	Ajs_2348	-	recombination protein RecR
2254	 63.06	0	2491252..2491584	-	110	121594690	-	Ajs_2349	-	hypothetical protein
2255	 69.90	0	2491615..2493654	-	679	121594691	-	Ajs_2350	-	DNA polymerase III, subunits gamma and tau
2256	 68.18	0	2493709..2494170	+	153	121594692	-	Ajs_2351	-	hypothetical protein
2257	 69.10	0	2494519..2495217	+	232	121594693	-	Ajs_2352	-	hypothetical protein
2258	 70.16	0	2495303..2496646	-	447	121594694	-	Ajs_2353	-	hypothetical protein
2259	 67.67	0	2496660..2497355	-	231	121594695	-	Ajs_2354	-	methyltransferase type 11
2260	 71.29	+1	2497459..2500764	-	1101	121594696	-	Ajs_2355	-	UvrD/REP helicase
2261	 73.16	+1	2500757..2503327	-	856	121594697	-	Ajs_2356	-	exonuclease-like protein
2262	 61.86	0	2503443..2503775	+	110	121594698	-	Ajs_2357	-	thioredoxin
2263	 61.68	-1	2504015..2505277	+	420	121594699	rho	Ajs_2358	-	transcription termination factor Rho
2264	 71.06	0	2505494..2506972	+	492	121594700	-	Ajs_2359	-	RND efflux system outer membrane lipoprotein
2265	 71.90	+1	2506993..2508063	+	356	121594701	-	Ajs_2360	-	secretion protein HlyD family protein
2266	 67.77	0	2508088..2510898	+	936	121594702	-	Ajs_2361	-	ABC transporter related
2267	 67.19	0	2510902..2512050	+	382	121594703	-	Ajs_2362	-	ABC-2 type transporter
2268	 56.86	-2	2512148..2512402	+	84	121594704	-	Ajs_2363	-	50S ribosomal protein L31P
2269	 71.44	+1	2512553..2514250	+	565	121594705	-	Ajs_2364	-	putative inner membrane transmembrane protein
2270	 67.54	0	2514250..2515626	+	458	121594706	-	Ajs_2365	-	MATE efflux family protein
2271	 68.81	0	2515571..2516968	-	465	121594707	-	Ajs_2366	-	multi-sensor signal transduction histidine kinase
2272	 65.96	0	2517055..2517762	-	235	121594708	-	Ajs_2367	-	two component transcriptional regulator
2273	 62.39	0	2517779..2518480	-	233	121594709	-	Ajs_2368	-	phosphate uptake regulator, PhoU
2274	 61.30	-1	2518495..2519277	-	260	121594710	-	Ajs_2369	-	phosphate ABC transporter, ATPase subunit
2275	 63.49	0	2519300..2520181	-	293	121594711	pstA	Ajs_2370	-	phosphate transporter permease subunit
2276	 63.51	0	2520178..2521191	-	337	121594712	-	Ajs_2371	-	phosphate ABC transporter, inner membrane subunit PstC
2277	 61.00	-1	2521270..2522310	-	346	121594713	-	Ajs_2372	-	phosphate ABC transporter, periplasmic phosphate-binding protein
2278	 63.82	0	2522511..2523002	+	163	121594714	-	Ajs_2373	-	beta-Ig-H3/fasciclin
2279	 65.96	0	2523034..2524167	+	377	121594715	-	Ajs_2374	-	twin-arginine translocation pathway signal
2280	 64.10	0	2524252..2525733	+	493	121594716	-	Ajs_2375	-	Ppx/GppA phosphatase
2281	 60.46	-1	2525799..2526233	+	144	121594717	-	Ajs_2376	-	hypothetical protein
2282	 64.09	0	2526285..2526749	-	154	121594718	-	Ajs_2377	-	phosphohistidine phosphatase, SixA
2283	 63.67	0	2526746..2528917	-	723	121594719	-	Ajs_2378	-	polyphosphate kinase
2284	 64.99	0	2529033..2529869	-	278	121594720	-	Ajs_2379	-	ornithine-acyl[acyl carrier protein] N-acyltransferase
2285	 65.17	0	2530052..2532322	+	756	121594721	-	Ajs_2380	-	diguanylate cyclase/phosphodiesterase
2286	 66.82	0	2532390..2533724	-	444	121594722	-	Ajs_2381	-	phosphoglucosamine mutase
2287	 66.55	0	2533737..2534588	-	283	121594723	-	Ajs_2382	-	dihydropteroate synthase
2288	 62.81	0	2534660..2536579	-	639	121594724	-	Ajs_2383	-	FtsH peptidase
2289	 61.76	0	2536723..2537436	-	237	121594725	-	Ajs_2384	-	ribosomal RNA methyltransferase RrmJ/FtsJ
2290	 62.24	0	2537463..2537936	+	157	121594726	-	Ajs_2385	-	hypothetical protein
2291	 63.65	0	2537948..2538709	+	253	121594727	-	Ajs_2386	-	hypothetical protein
2292	 65.99	0	2538767..2539648	-	293	121594728	-	Ajs_2387	-	hypothetical protein
2293	 62.32	0	2539655..2540068	-	137	121594729	-	Ajs_2388	-	hypothetical protein
2294	 66.25	0	2540080..2540556	-	158	121594730	-	Ajs_2389	-	transcription elongation factor GreA
2295	 64.45	0	2540684..2543845	-	1053	121594731	-	Ajs_2390	-	carbamoyl-phosphate synthase large subunit
2296	 62.69	0	2543946..2544347	-	133	121594732	-	Ajs_2391	-	hypothetical protein
2297	 64.79	0	2544369..2545541	-	390	121594733	-	Ajs_2392	-	carbamoyl-phosphate synthase small subunit
2298	 61.31	-1	2545884..2546312	-	142	121594734	-	Ajs_2393	-	MerR family transcriptional regulator
2299	 61.54	-1	2546413..2546763	-	116	121594735	-	Ajs_2394	-	histone family protein DNA-binding protein
2300	 67.28	0	2546760..2549204	-	814	121594736	pheT	Ajs_2395	-	phenylalanyl-tRNA synthetase subunit beta
2301	 66.29	0	2549326..2550378	-	350	121594737	-	Ajs_2396	-	phenylalanyl-tRNA synthetase, alpha subunit
2302	 62.78	0	2550481..2550840	-	119	121594738	rplT	Ajs_2397	-	50S ribosomal protein L20
2303	 56.86	-2	2550867..2551070	-	67	121594739	-	Ajs_2398	-	50S ribosomal protein L35P
2304	 61.17	-1	2551244..2551861	-	205	121594740	-	Ajs_2399	-	translation initiation factor 3
2305	 61.04	-1	2551921..2553840	-	639	121594741	-	Ajs_2400	-	Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
2306	 62.01	0	2554123..2555454	-	443	121594742	-	Ajs_2401	-	isocitrate lyase
2307	 63.67	0	2555728..2556729	+	333	121594743	-	Ajs_2402	-	hypothetical protein
2308	 68.05	0	2556739..2557245	-	168	121594744	-	Ajs_2403	-	ribonuclease activity regulator protein RraA
2309	 62.89	0	2557469..2557759	+	96	121594745	-	Ajs_2404	-	SWIB/MDM2 domain-containing protein
2310	 63.00	0	2557946..2558218	+	90	121594746	-	Ajs_2405	-	BFD/(2Fe-2S)-binding domain-containing protein
2311	 69.66	0	2558326..2559027	+	233	121594747	-	Ajs_2406	-	TonB family protein
2312	 64.99	0	2559045..2559761	+	238	121594748	-	Ajs_2407	-	MotA/TolQ/ExbB proton channel
2313	 65.69	0	2559768..2560178	+	136	121594749	-	Ajs_2408	-	biopolymer transport protein ExbD/TolR
2314	 68.10	0	2560375..2560584	+	69	121594750	-	Ajs_2409	-	hypothetical protein
2315	 68.38	0	2560806..2561213	-	135	121594751	-	Ajs_2410	-	hypothetical protein
2316	 65.66	0	2561441..2562133	+	230	121594752	-	Ajs_2411	-	hypothetical protein
2317	 70.28	0	2562247..2562633	+	128	121594753	-	Ajs_2412	-	hypothetical protein
2318	 67.63	0	2562710..2564158	-	482	121594754	rumA	Ajs_2413	-	23S rRNA 5-methyluridine methyltransferase
2319	 67.58	0	2564208..2564534	-	108	121594755	-	Ajs_2414	-	hypothetical protein
2320	 66.82	0	2564563..2565231	+	222	121594756	-	Ajs_2415	-	ECF subfamily RNA polymerase sigma-24 factor
2321	 69.46	0	2565348..2566169	+	273	121594757	-	Ajs_2416	-	hypothetical protein
2322	 66.88	0	2566306..2566785	+	159	121594758	-	Ajs_2417	-	hypothetical protein
2323	 61.39	-1	2566862..2567392	+	176	121594759	-	Ajs_2418	-	hypothetical protein
2324	 63.33	0	2567341..2567820	-	159	121594760	-	Ajs_2419	-	AsnC family transcriptional regulator
2325	 71.87	+1	2568027..2571602	+	1191	121594761	-	Ajs_2420	-	delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase
2326	 72.28	+1	2571668..2572273	-	201	121594762	-	Ajs_2421	-	2',5' RNA ligase
2327	 69.48	0	2572688..2573470	+	260	121594763	-	Ajs_2422	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2328	 72.30	+1	2573488..2574534	+	348	121594764	-	Ajs_2423	-	polysulphide reductase, NrfD
2329	 69.05	0	2574635..2577829	+	1064	121594765	-	Ajs_2424	-	molydopterin dinucleotide-binding region
2330	 44.30	-2	2578382..2579275	+	297	121594766	-	Ajs_2425	-	hypothetical protein
2331	 46.99	-2	2579272..2581842	+	856	121594767	-	Ajs_2426	-	DEAD/DEAH box helicase domain-containing protein
2332	 48.00	-2	2581835..2582134	+	99	121594768	-	Ajs_2427	-	hypothetical protein
2333	 73.36	+1	2582635..2585202	-	855	121594769	-	Ajs_2428	-	helicase c2
2334	 71.95	+1	2585199..2586884	-	561	121594770	-	Ajs_2429	-	hypothetical protein
2335	 61.58	-1	2586950..2587951	-	333	121594771	-	Ajs_2430	-	hypothetical protein
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.