IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2173	 66.67	0	2398556..2399026	+	156	121594609	-	Ajs_2266	-	activator of Hsp90 ATPase 1 family protein
2174	 67.77	0	2399093..2399545	+	150	121594610	-	Ajs_2267	-	3-demethylubiquinone-9 3-methyltransferase
2175	 69.75	0	2399566..2400312	-	248	121594611	-	Ajs_2268	-	RNA methyltransferase
2176	 68.33	0	2400559..2401761	+	400	121594612	-	Ajs_2269	-	serine/threonine transporter SstT
2177	 68.53	0	2401872..2402624	-	250	121594613	-	Ajs_2270	-	ABC transporter related
2178	 71.30	+1	2402625..2403272	+	215	121594614	-	Ajs_2271	-	GDSL family lipase
2179	 68.34	0	2403288..2404124	-	278	121594615	-	Ajs_2272	-	integral membrane protein
2180	 69.31	0	2404219..2405466	-	415	121594616	-	Ajs_2273	-	cystathionine beta-lyase
2181	 66.23	0	2405500..2405952	-	150	121594617	-	Ajs_2274	-	transport-associated
2182	 69.82	0	2406107..2407849	+	580	121594618	-	Ajs_2275	-	sulphate transporter
2183	 67.18	0	2407884..2408657	+	257	121594619	-	Ajs_2276	-	diguanylate cyclase
2184	 68.47	0	2408671..2409558	+	295	121594620	-	Ajs_2277	-	cobyrinic acid a,c-diamide synthase
2185	 71.19	+1	2409617..2410522	-	301	121594621	-	Ajs_2278	-	pirin domain-containing protein
2186	 67.52	0	2410519..2410986	-	155	121594622	-	Ajs_2279	-	OsmC family protein
2187	 70.01	0	2413626..2414612	-	328	121594623	-	Ajs_2281	-	muramoyltetrapeptide carboxypeptidase
2188	 73.85	+1	2414605..2415690	-	361	121594624	-	Ajs_2282	-	CMP/dCMP deaminase, zinc-binding
2189	 71.31	+1	2415744..2415980	-	78	121594625	-	Ajs_2283	-	hypothetical protein
2190	 65.84	0	2416009..2417223	-	404	121594626	-	Ajs_2284	-	sodium/glutamate symporter
2191	 65.66	0	2417354..2419432	+	692	121594627	-	Ajs_2285	-	peptidase U32
2192	 67.99	0	2419729..2421009	+	426	121594628	-	Ajs_2286	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
2193	 71.73	+1	2421078..2422439	-	453	121594629	-	Ajs_2287	-	hypothetical protein
2194	 70.96	0	2422459..2423460	-	333	121594630	-	Ajs_2288	-	hypothetical protein
2195	 62.59	0	2423757..2424344	-	195	121594631	-	Ajs_2289	-	OmpW family protein
2196	 68.97	0	2424498..2425496	-	332	121594632	-	Ajs_2290	-	hypothetical protein
2197	 78.01	+2	2425612..2426043	+	143	121594633	-	Ajs_2291	-	hypothetical protein
2198	 68.41	0	2426183..2430208	+	1341	121594634	-	Ajs_2292	-	hypothetical protein
2199	 65.44	0	2430275..2431090	+	271	121594635	-	Ajs_2293	-	methionine aminopeptidase, type I
2200	 67.98	0	2431150..2433804	+	884	121594636	-	Ajs_2294	-	PII uridylyl-transferase
2201	 66.30	0	2433863..2434402	-	179	121594637	-	Ajs_2295	-	peptide deformylase
2202	 70.48	0	2434508..2434927	+	139	121594638	-	Ajs_2296	-	hypothetical protein
2203	 62.78	0	2435326..2436585	-	419	121594639	-	Ajs_2297	-	isocitrate dehydrogenase
2204	 70.14	0	2436692..2437123	+	143	121594640	-	Ajs_2298	-	hypothetical protein
2205	 66.47	0	2437210..2437725	+	171	121594641	-	Ajs_2299	-	hypothetical protein
2206	 63.40	0	2437959..2440193	-	744	121594642	-	Ajs_2300	-	isocitrate dehydrogenase, NADP-dependent
2207	 62.20	0	2440538..2441119	-	193	121594643	-	Ajs_2301	-	superoxide dismutase
2208	 69.66	0	2441267..2442604	-	445	121594644	-	Ajs_2302	-	exodeoxyribonuclease VII large subunit
2209	 67.92	0	2442981..2443619	+	212	121594645	-	Ajs_2303	-	MotA/TolQ/ExbB proton channel
2210	 65.26	0	2443651..2444076	+	141	121594646	-	Ajs_2304	-	biopolymer transport protein ExbD/TolR
2211	 72.57	+1	2444087..2445103	+	338	121594647	-	Ajs_2305	-	lipid-A-disaccharide synthase
2212	 65.03	0	2445112..2445294	+	60	121594648	-	Ajs_2306	-	hypothetical protein
2213	 72.37	+1	2445291..2446079	+	262	121594649	-	Ajs_2307	-	3-deoxy-D-manno-octulosonate cytidylyltransferase
2214	 65.75	0	2446201..2446857	+	218	121594650	adk	Ajs_2308	-	adenylate kinase
2215	 70.88	0	2446945..2447916	-	323	121594651	-	Ajs_2309	-	asparaginase
2216	 68.74	0	2447999..2448673	+	224	121594652	-	Ajs_2310	-	LexA repressor
2217	 69.90	0	2448835..2449236	+	133	121594653	-	Ajs_2311	-	hypothetical protein
2218	 68.46	0	2449358..2449858	+	166	121594654	-	Ajs_2312	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
2219	 66.87	0	2450088..2454113	-	1341	121594655	-	Ajs_2313	-	ATP-dependent helicase HrpA
2220	 69.43	0	2454161..2455501	-	446	121594656	-	Ajs_2314	-	SAF domain-containing protein
2221	 70.88	0	2455792..2456979	+	395	121594657	-	Ajs_2315	-	metallophosphoesterase
2222	 72.25	+1	2457163..2457861	-	232	121594658	-	Ajs_2316	-	nitroreductase
2223	 75.47	+1	2457864..2459033	-	389	121594659	-	Ajs_2317	-	acetyl-CoA acetyltransferases
2224	 71.99	+1	2459030..2460514	-	494	121594660	-	Ajs_2318	-	AMP-dependent synthetase and ligase
2225	 70.09	0	2460511..2461095	-	194	121594661	-	Ajs_2319	-	BioY protein
2226	 72.39	+1	2461132..2461725	-	197	121594662	-	Ajs_2320	-	cobalt transport protein
2227	 67.60	0	2461743..2462597	-	284	121594663	-	Ajs_2321	-	ABC transporter related
2228	 69.72	0	2462772..2464049	+	425	121594664	-	Ajs_2322	-	major facilitator superfamily transporter
2229	 72.99	+1	2464130..2464477	-	115	121594665	-	Ajs_2323	-	hypothetical protein
2230	 68.31	0	2464583..2465251	+	222	121594666	-	Ajs_2324	-	methyltransferase type 11
2231	 65.44	0	2465352..2466326	-	324	121594667	-	Ajs_2325	-	hypothetical protein
2232	 69.07	0	2466829..2468037	+	402	121594668	-	Ajs_2326	-	acyltransferase 3
2233	 66.22	0	2468324..2469670	+	448	121594669	-	Ajs_2327	-	N-acetylglutamate synthase
2234	 72.84	+1	2469674..2470564	-	296	121594670	-	Ajs_2328	-	Beta-lactamase
2235	 72.55	+1	2470668..2471534	+	288	121594671	-	Ajs_2329	-	LysR family transcriptional regulator
2236	 72.39	+1	2471629..2472030	+	133	121594672	-	Ajs_2330	-	hypothetical protein
2237	 72.39	+1	2474422..2475975	+	517	121594673	-	Ajs_2332	-	PepSY-associated TM helix domain-containing protein
2238	 72.17	+1	2476001..2476672	+	223	121594674	-	Ajs_2333	-	glutaredoxin
2239	 64.00	0	2476759..2477283	-	174	121594675	-	Ajs_2334	-	disulphide bond formation protein DsbB
2240	 66.93	0	2477346..2478473	-	375	121594676	-	Ajs_2335	-	sulfate ABC transporter, ATPase subunit
2241	 67.76	0	2478485..2479396	-	303	121594677	-	Ajs_2336	-	sulfate ABC transporter, inner membrane subunit CysW
2242	 63.50	0	2479393..2480244	-	283	121594678	-	Ajs_2337	-	sulfate ABC transporter, inner membrane subunit CysT
2243	 64.68	0	2480392..2481399	-	335	121594679	-	Ajs_2338	-	sulfate ABC transporter, periplasmic sulfate-binding protein
2244	 71.59	+1	2481680..2482633	-	317	121594680	-	Ajs_2339	-	LysR family transcriptional regulator
2245	 69.43	0	2482761..2483411	+	216	121594681	-	Ajs_2340	-	(Acyl-carrier-protein) phosphodiesterase
2246	 65.94	0	2483535..2484086	-	183	121594682	-	Ajs_2341	-	NADPH-dependent FMN reductase
2247	 65.04	0	2484253..2485053	-	266	121594683	-	Ajs_2342	-	YaeC family lipoprotein
2248	 71.27	+1	2485258..2486364	-	368	121594684	-	Ajs_2343	-	hypothetical protein
2249	 67.87	0	2486526..2487191	-	221	121594685	-	Ajs_2344	-	binding-protein-dependent transport systems inner membrane component
2250	 68.86	0	2487202..2488248	-	348	121594686	-	Ajs_2345	-	ABC transporter related
2251	 69.26	0	2488789..2490021	+	410	121594687	-	Ajs_2346	-	major facilitator superfamily transporter
2252	 67.16	0	2490031..2490438	-	135	121594688	-	Ajs_2347	-	membrane protein-like protein
2253	 72.08	+1	2490503..2491093	-	196	121594689	recR	Ajs_2348	-	recombination protein RecR
2254	 63.06	0	2491252..2491584	-	110	121594690	-	Ajs_2349	-	hypothetical protein
2255	 69.90	0	2491615..2493654	-	679	121594691	-	Ajs_2350	-	DNA polymerase III, subunits gamma and tau
2256	 68.18	0	2493709..2494170	+	153	121594692	-	Ajs_2351	-	hypothetical protein
2257	 69.10	0	2494519..2495217	+	232	121594693	-	Ajs_2352	-	hypothetical protein
2258	 70.16	0	2495303..2496646	-	447	121594694	-	Ajs_2353	-	hypothetical protein
2259	 67.67	0	2496660..2497355	-	231	121594695	-	Ajs_2354	-	methyltransferase type 11
2260	 71.29	+1	2497459..2500764	-	1101	121594696	-	Ajs_2355	-	UvrD/REP helicase
2261	 73.16	+1	2500757..2503327	-	856	121594697	-	Ajs_2356	-	exonuclease-like protein
2262	 61.86	0	2503443..2503775	+	110	121594698	-	Ajs_2357	-	thioredoxin
2263	 61.68	-1	2504015..2505277	+	420	121594699	rho	Ajs_2358	-	transcription termination factor Rho
2264	 71.06	0	2505494..2506972	+	492	121594700	-	Ajs_2359	-	RND efflux system outer membrane lipoprotein
2265	 71.90	+1	2506993..2508063	+	356	121594701	-	Ajs_2360	-	secretion protein HlyD family protein
2266	 67.77	0	2508088..2510898	+	936	121594702	-	Ajs_2361	-	ABC transporter related
2267	 67.19	0	2510902..2512050	+	382	121594703	-	Ajs_2362	-	ABC-2 type transporter
2268	 56.86	-2	2512148..2512402	+	84	121594704	-	Ajs_2363	-	50S ribosomal protein L31P
2269	 71.44	+1	2512553..2514250	+	565	121594705	-	Ajs_2364	-	putative inner membrane transmembrane protein
2270	 67.54	0	2514250..2515626	+	458	121594706	-	Ajs_2365	-	MATE efflux family protein
2271	 68.81	0	2515571..2516968	-	465	121594707	-	Ajs_2366	-	multi-sensor signal transduction histidine kinase
2272	 65.96	0	2517055..2517762	-	235	121594708	-	Ajs_2367	-	two component transcriptional regulator
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.