IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2139	 64.63	0	2365123..2365515	-	130	121594575	-	Ajs_2230	-	hypothetical protein
2140	 64.98	0	2365541..2365777	-	78	121594576	-	Ajs_2231	-	hypothetical protein
2141	 67.96	0	2366559..2368574	-	671	121594577	-	Ajs_2233	-	DNA topoisomerase III
2142	 66.67	0	2368869..2369252	-	127	121594578	-	Ajs_2234	-	single-strand DNA-binding protein
2143	 65.58	0	2369249..2369800	-	183	121594579	-	Ajs_2235	-	hypothetical protein
2144	 68.08	0	2369797..2370576	-	259	121594580	-	Ajs_2236	-	hypothetical protein
2145	 63.54	0	2370700..2370891	-	63	121594581	-	Ajs_2237	-	hypothetical protein
2146	 68.75	0	2370920..2371207	-	95	121594582	-	Ajs_2238	-	addiction module antitoxin
2147	 67.67	0	2371194..2371493	-	99	121594583	-	Ajs_2239	-	addiction module antitoxin
2148	 59.67	-1	2372700..2375615	-	971	121594584	-	Ajs_2241	-	transposase Tn3 family protein
2149	 70.92	0	2375932..2376354	+	140	121594585	-	Ajs_2242	-	hypothetical protein
2150	 68.24	0	2376372..2378915	-	847	121594586	-	Ajs_2243	-	radical SAM domain-containing protein
2151	 71.15	0	2378955..2379623	+	222	121594587	-	Ajs_2244	-	hypothetical protein
2152	 72.47	+1	2379733..2381145	+	470	121594588	-	Ajs_2245	-	dihydrolipoamide dehydrogenase
2153	 72.06	+1	2381302..2381505	+	67	121594589	-	Ajs_2246	-	hypothetical protein
2154	 73.14	+1	2381564..2382691	-	375	121594590	-	Ajs_2247	-	FAD dependent oxidoreductase
2155	 71.95	+1	2382713..2384263	-	516	121594591	-	Ajs_2248	-	amidase
2156	 68.51	0	2384307..2385284	-	325	121594592	-	Ajs_2249	-	hypothetical protein
2157	 70.28	0	2385355..2386710	-	451	121594593	-	Ajs_2250	-	D-serine dehydratase
2158	 68.66	0	2386808..2387761	+	317	121594594	-	Ajs_2251	-	LysR family transcriptional regulator
2159	 67.99	0	2387813..2388115	+	100	121594595	-	Ajs_2252	-	XRE family transcriptional regulator
2160	 70.70	0	2388140..2389453	+	437	121594596	-	Ajs_2253	-	HipA domain-containing protein
2161	 64.78	0	2389686..2390585	-	299	121594597	-	Ajs_2254	-	LysR family transcriptional regulator
2162	 67.51	0	2390681..2391748	+	355	121594598	-	Ajs_2255	-	hypothetical protein
2163	 72.16	+1	2391869..2392432	-	187	121594599	-	Ajs_2256	-	ankyrin
2164	 66.67	0	2392503..2392835	-	110	121594600	-	Ajs_2257	-	small multidrug resistance protein
2165	 72.10	+1	2392941..2393786	-	281	121594601	-	Ajs_2258	-	5-carboxymethyl-2-hydroxymuconate delta-isomerase
2166	 72.41	+1	2393938..2394546	+	202	121594602	-	Ajs_2259	-	chromate transporter
2167	 70.65	0	2394554..2395156	+	200	121594603	-	Ajs_2260	-	chromate transporter
2168	 71.88	+1	2395164..2395835	-	223	121594604	-	Ajs_2261	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
2169	 74.20	+1	2396157..2396939	-	260	121594605	-	Ajs_2262	-	silent information regulator protein Sir2
2170	 72.65	+1	2396936..2397604	-	222	121594606	-	Ajs_2263	-	TetR family transcriptional regulator
2171	 64.41	0	2397693..2398046	+	117	121594607	-	Ajs_2264	-	hypothetical protein
2172	 65.78	0	2398104..2398556	+	150	121594608	-	Ajs_2265	-	3-demethylubiquinone-9 3-methyltransferase
2173	 66.67	0	2398556..2399026	+	156	121594609	-	Ajs_2266	-	activator of Hsp90 ATPase 1 family protein
2174	 67.77	0	2399093..2399545	+	150	121594610	-	Ajs_2267	-	3-demethylubiquinone-9 3-methyltransferase
2175	 69.75	0	2399566..2400312	-	248	121594611	-	Ajs_2268	-	RNA methyltransferase
2176	 68.33	0	2400559..2401761	+	400	121594612	-	Ajs_2269	-	serine/threonine transporter SstT
2177	 68.53	0	2401872..2402624	-	250	121594613	-	Ajs_2270	-	ABC transporter related
2178	 71.30	+1	2402625..2403272	+	215	121594614	-	Ajs_2271	-	GDSL family lipase
2179	 68.34	0	2403288..2404124	-	278	121594615	-	Ajs_2272	-	integral membrane protein
2180	 69.31	0	2404219..2405466	-	415	121594616	-	Ajs_2273	-	cystathionine beta-lyase
2181	 66.23	0	2405500..2405952	-	150	121594617	-	Ajs_2274	-	transport-associated
2182	 69.82	0	2406107..2407849	+	580	121594618	-	Ajs_2275	-	sulphate transporter
2183	 67.18	0	2407884..2408657	+	257	121594619	-	Ajs_2276	-	diguanylate cyclase
2184	 68.47	0	2408671..2409558	+	295	121594620	-	Ajs_2277	-	cobyrinic acid a,c-diamide synthase
2185	 71.19	+1	2409617..2410522	-	301	121594621	-	Ajs_2278	-	pirin domain-containing protein
2186	 67.52	0	2410519..2410986	-	155	121594622	-	Ajs_2279	-	OsmC family protein
2187	 70.01	0	2413626..2414612	-	328	121594623	-	Ajs_2281	-	muramoyltetrapeptide carboxypeptidase
2188	 73.85	+1	2414605..2415690	-	361	121594624	-	Ajs_2282	-	CMP/dCMP deaminase, zinc-binding
2189	 71.31	+1	2415744..2415980	-	78	121594625	-	Ajs_2283	-	hypothetical protein
2190	 65.84	0	2416009..2417223	-	404	121594626	-	Ajs_2284	-	sodium/glutamate symporter
2191	 65.66	0	2417354..2419432	+	692	121594627	-	Ajs_2285	-	peptidase U32
2192	 67.99	0	2419729..2421009	+	426	121594628	-	Ajs_2286	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
2193	 71.73	+1	2421078..2422439	-	453	121594629	-	Ajs_2287	-	hypothetical protein
2194	 70.96	0	2422459..2423460	-	333	121594630	-	Ajs_2288	-	hypothetical protein
2195	 62.59	0	2423757..2424344	-	195	121594631	-	Ajs_2289	-	OmpW family protein
2196	 68.97	0	2424498..2425496	-	332	121594632	-	Ajs_2290	-	hypothetical protein
2197	 78.01	+2	2425612..2426043	+	143	121594633	-	Ajs_2291	-	hypothetical protein
2198	 68.41	0	2426183..2430208	+	1341	121594634	-	Ajs_2292	-	hypothetical protein
2199	 65.44	0	2430275..2431090	+	271	121594635	-	Ajs_2293	-	methionine aminopeptidase, type I
2200	 67.98	0	2431150..2433804	+	884	121594636	-	Ajs_2294	-	PII uridylyl-transferase
2201	 66.30	0	2433863..2434402	-	179	121594637	-	Ajs_2295	-	peptide deformylase
2202	 70.48	0	2434508..2434927	+	139	121594638	-	Ajs_2296	-	hypothetical protein
2203	 62.78	0	2435326..2436585	-	419	121594639	-	Ajs_2297	-	isocitrate dehydrogenase
2204	 70.14	0	2436692..2437123	+	143	121594640	-	Ajs_2298	-	hypothetical protein
2205	 66.47	0	2437210..2437725	+	171	121594641	-	Ajs_2299	-	hypothetical protein
2206	 63.40	0	2437959..2440193	-	744	121594642	-	Ajs_2300	-	isocitrate dehydrogenase, NADP-dependent
2207	 62.20	0	2440538..2441119	-	193	121594643	-	Ajs_2301	-	superoxide dismutase
2208	 69.66	0	2441267..2442604	-	445	121594644	-	Ajs_2302	-	exodeoxyribonuclease VII large subunit
2209	 67.92	0	2442981..2443619	+	212	121594645	-	Ajs_2303	-	MotA/TolQ/ExbB proton channel
2210	 65.26	0	2443651..2444076	+	141	121594646	-	Ajs_2304	-	biopolymer transport protein ExbD/TolR
2211	 72.57	+1	2444087..2445103	+	338	121594647	-	Ajs_2305	-	lipid-A-disaccharide synthase
2212	 65.03	0	2445112..2445294	+	60	121594648	-	Ajs_2306	-	hypothetical protein
2213	 72.37	+1	2445291..2446079	+	262	121594649	-	Ajs_2307	-	3-deoxy-D-manno-octulosonate cytidylyltransferase
2214	 65.75	0	2446201..2446857	+	218	121594650	adk	Ajs_2308	-	adenylate kinase
2215	 70.88	0	2446945..2447916	-	323	121594651	-	Ajs_2309	-	asparaginase
2216	 68.74	0	2447999..2448673	+	224	121594652	-	Ajs_2310	-	LexA repressor
2217	 69.90	0	2448835..2449236	+	133	121594653	-	Ajs_2311	-	hypothetical protein
2218	 68.46	0	2449358..2449858	+	166	121594654	-	Ajs_2312	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
2219	 66.87	0	2450088..2454113	-	1341	121594655	-	Ajs_2313	-	ATP-dependent helicase HrpA
2220	 69.43	0	2454161..2455501	-	446	121594656	-	Ajs_2314	-	SAF domain-containing protein
2221	 70.88	0	2455792..2456979	+	395	121594657	-	Ajs_2315	-	metallophosphoesterase
2222	 72.25	+1	2457163..2457861	-	232	121594658	-	Ajs_2316	-	nitroreductase
2223	 75.47	+1	2457864..2459033	-	389	121594659	-	Ajs_2317	-	acetyl-CoA acetyltransferases
2224	 71.99	+1	2459030..2460514	-	494	121594660	-	Ajs_2318	-	AMP-dependent synthetase and ligase
2225	 70.09	0	2460511..2461095	-	194	121594661	-	Ajs_2319	-	BioY protein
2226	 72.39	+1	2461132..2461725	-	197	121594662	-	Ajs_2320	-	cobalt transport protein
2227	 67.60	0	2461743..2462597	-	284	121594663	-	Ajs_2321	-	ABC transporter related
2228	 69.72	0	2462772..2464049	+	425	121594664	-	Ajs_2322	-	major facilitator superfamily transporter
2229	 72.99	+1	2464130..2464477	-	115	121594665	-	Ajs_2323	-	hypothetical protein
2230	 68.31	0	2464583..2465251	+	222	121594666	-	Ajs_2324	-	methyltransferase type 11
2231	 65.44	0	2465352..2466326	-	324	121594667	-	Ajs_2325	-	hypothetical protein
2232	 69.07	0	2466829..2468037	+	402	121594668	-	Ajs_2326	-	acyltransferase 3
2233	 66.22	0	2468324..2469670	+	448	121594669	-	Ajs_2327	-	N-acetylglutamate synthase
2234	 72.84	+1	2469674..2470564	-	296	121594670	-	Ajs_2328	-	Beta-lactamase
2235	 72.55	+1	2470668..2471534	+	288	121594671	-	Ajs_2329	-	LysR family transcriptional regulator
2236	 72.39	+1	2471629..2472030	+	133	121594672	-	Ajs_2330	-	hypothetical protein
2237	 72.39	+1	2474422..2475975	+	517	121594673	-	Ajs_2332	-	PepSY-associated TM helix domain-containing protein
2238	 72.17	+1	2476001..2476672	+	223	121594674	-	Ajs_2333	-	glutaredoxin
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.