IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2059	 64.55	0	2268368..2269594	+	408	121594495	-	Ajs_2147	-	transposase IS116/IS110/IS902 family protein
2060	 67.97	0	2269703..2270929	-	408	121594496	-	Ajs_2148	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
2061	 62.82	0	2270922..2272013	-	363	121594497	-	Ajs_2149	-	putative transposase
2062	 62.57	0	2272136..2274232	-	698	121594498	-	Ajs_2150	-	excinuclease ABC subunit B
2063	 65.33	0	2274341..2275537	+	398	121594499	-	Ajs_2151	-	aromatic amino acid aminotransferase
2064	 64.97	0	2275691..2277460	+	589	121594500	-	Ajs_2152	-	methyl-accepting chemotaxis sensory transducer
2065	 71.22	+1	2277463..2278341	+	292	121594501	-	Ajs_2153	-	L-carnitine dehydratase/bile acid-inducible protein F
2066	 66.87	0	2278349..2278843	+	164	121594502	-	Ajs_2154	-	hypothetical protein
2067	 57.81	-1	2281797..2283050	+	417	121594503	-	Ajs_2156	-	transposase, mutator type
2068	 61.13	-1	2283178..2284206	+	342	121594504	-	Ajs_2157	-	integrase catalytic subunit
2069	 60.98	-1	2284331..2284963	+	210	121594505	-	Ajs_2158	-	hypothetical protein
2070	 66.67	0	2285016..2285273	+	85	121594506	-	Ajs_2159	-	hypothetical protein
2071	 60.48	-1	2285407..2286117	+	236	121594507	-	Ajs_2160	-	methyltransferase type 11
2072	 66.16	0	2286208..2287785	+	525	121594508	-	Ajs_2161	-	beta-phosphoglucomutase family hydrolase
2073	 65.47	0	2287782..2290205	+	807	121594509	-	Ajs_2162	-	trehalose 6-phosphate phosphorylase
2074	 64.99	0	2290268..2291281	+	337	121594510	-	Ajs_2163	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
2075	 67.40	0	2291290..2293728	+	812	121594511	-	Ajs_2164	-	phosphoenolpyruvate synthase
2076	 64.27	0	2293773..2294813	+	346	121594512	-	Ajs_2165	-	glyceraldehyde-3-phosphate dehydrogenase
2077	 64.90	0	2296121..2296687	+	188	121594513	-	Ajs_2168	-	TetR family transcriptional regulator
2078	 67.34	0	2296764..2297501	-	245	121594514	-	Ajs_2169	-	LysR family transcriptional regulator
2079	 67.48	0	2297676..2298293	+	205	121594515	-	Ajs_2170	-	hypothetical protein
2080	 66.73	0	2298290..2299960	+	556	121594516	-	Ajs_2171	-	integrase catalytic subunit
2081	 65.77	0	2299957..2300853	+	298	121594517	-	Ajs_2172	-	TniB family protein
2082	 64.32	0	2300850..2302343	+	497	121594518	-	Ajs_2173	-	hypothetical protein
2083	 62.33	0	2302481..2302780	+	99	121594519	-	Ajs_2174	-	XRE family transcriptional regulator
2084	 68.29	0	2302807..2304651	-	614	121594520	-	Ajs_2175	-	relaxase
2085	 66.45	0	2304854..2305774	-	306	121594521	-	Ajs_2176	-	hypothetical protein
2086	 64.98	0	2305767..2306594	-	275	121594522	-	Ajs_2177	-	hypothetical protein
2087	 68.29	0	2306755..2307123	+	122	121594523	-	Ajs_2178	-	hypothetical protein
2088	 63.98	0	2307140..2308663	-	507	121594524	-	Ajs_2179	-	hypothetical protein
2089	 71.47	+1	2308679..2309032	-	117	121594525	-	Ajs_2180	-	hypothetical protein
2090	 68.94	0	2309029..2310435	-	468	121594526	-	Ajs_2181	-	hypothetical protein
2091	 67.30	0	2310446..2311390	-	314	121594527	-	Ajs_2182	-	hypothetical protein
2092	 71.33	+1	2311387..2311836	-	149	121594528	-	Ajs_2183	-	hypothetical protein
2093	 65.86	0	2312005..2312499	-	164	121594529	-	Ajs_2184	-	DNA repair protein RadC
2094	 70.16	0	2312695..2313438	-	247	121594530	-	Ajs_2185	-	hypothetical protein
2095	 67.95	0	2313452..2316340	-	962	121594531	-	Ajs_2186	-	hypothetical protein
2096	 72.41	+1	2316340..2316774	-	144	121594532	-	Ajs_2187	-	hypothetical protein
2097	 68.55	0	2316755..2318188	-	477	121594533	-	Ajs_2188	-	hypothetical protein
2098	 72.57	+1	2318178..2319092	-	304	121594534	-	Ajs_2189	-	hypothetical protein
2099	 68.11	0	2319089..2319781	-	230	121594535	-	Ajs_2190	-	hypothetical protein
2100	 72.51	+1	2319778..2320188	-	136	121594536	-	Ajs_2191	-	hypothetical protein
2101	 67.75	0	2320201..2320569	-	122	121594537	-	Ajs_2192	-	hypothetical protein
2102	 67.08	0	2320592..2320831	-	79	121594538	-	Ajs_2193	-	hypothetical protein
2103	 71.67	+1	2320828..2321187	-	119	121594539	-	Ajs_2194	-	hypothetical protein
2104	 57.28	-1	2321480..2321692	+	70	121594540	-	Ajs_2195	-	phage transcriptional regulator, AlpA
2105	 59.40	-1	2321702..2322802	+	366	121594541	-	Ajs_2196	-	DNA-cytosine methyltransferase
2106	 62.09	0	2322823..2323281	+	152	121594542	-	Ajs_2197	-	putative very short patch repair protein
2107	 62.46	0	2323302..2326442	+	1046	121594543	-	Ajs_2198	-	helicase domain-containing protein
2108	 63.75	0	2326439..2328979	+	846	121594544	-	Ajs_2199	-	hypothetical protein
2109	 67.97	0	2328992..2330218	-	408	121594545	-	Ajs_2200	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
2110	 59.06	-1	2330411..2331949	+	512	121594546	-	Ajs_2201	-	hypothetical protein
2111	 59.87	-1	2331946..2333901	+	651	121594547	-	Ajs_2202	-	DNA mismatch repair ATPase-like protein
2112	 63.31	0	2333914..2337933	+	1339	121594548	-	Ajs_2203	-	helicase domain-containing protein
2113	 61.77	0	2337936..2339795	+	619	121594549	-	Ajs_2204	-	hypothetical protein
2114	 59.84	-1	2339797..2340558	+	253	121594550	-	Ajs_2205	-	phospholipase D/transphosphatidylase
2115	 57.72	-1	2340610..2341302	-	230	121594551	-	Ajs_2206	-	hypothetical protein
2116	 67.47	0	2341585..2342334	-	249	121594552	-	Ajs_2207	-	hypothetical protein
2117	 67.45	0	2342331..2344487	-	718	121594553	-	Ajs_2208	-	hypothetical protein
2118	 72.66	+1	2344496..2345029	-	177	121594554	-	Ajs_2209	-	hypothetical protein
2119	 73.11	+1	2345026..2345646	-	206	121594555	-	Ajs_2210	-	lytic transglycosylase, catalytic
2120	 73.33	+1	2345631..2346350	-	239	121594556	-	Ajs_2211	-	putative secreted protein
2121	 70.22	0	2346437..2347084	-	215	121594557	-	Ajs_2212	-	hypothetical protein
2122	 69.28	0	2347081..2347692	-	203	121594558	-	Ajs_2213	-	hypothetical protein
2123	 56.09	-2	2348050..2348361	+	103	121594559	-	Ajs_2214	-	hypothetical protein
2124	 58.88	-1	2348354..2349265	+	303	121594560	-	Ajs_2215	-	hypothetical protein
2125	 60.98	-1	2349262..2349507	+	81	121594561	-	Ajs_2216	-	hypothetical protein
2126	 58.39	-1	2349504..2351267	+	587	121594562	-	Ajs_2217	-	hypothetical protein
2127	 53.93	-2	2351304..2353832	+	842	121594563	-	Ajs_2218	-	TPR repeat-containing protein
2128	 60.62	-1	2354027..2355448	-	473	121594564	-	Ajs_2219	-	RNA-directed DNA polymerase
2129	 64.86	0	2355919..2358189	-	756	121594565	-	Ajs_2220	-	helicase domain-containing protein
2130	 63.73	0	2358301..2358606	-	101	121594566	-	Ajs_2221	-	hypothetical protein
2131	 66.58	0	2358708..2359817	-	369	121594567	-	Ajs_2222	-	hypothetical protein
2132	 66.05	0	2359883..2360533	-	216	121594568	-	Ajs_2223	-	hypothetical protein
2133	 65.85	0	2360619..2360984	-	121	121594569	-	Ajs_2224	-	hypothetical protein
2134	 66.34	0	2361074..2361685	-	203	121594570	-	Ajs_2225	-	hypothetical protein
2135	 64.67	0	2361741..2362292	-	183	121594571	-	Ajs_2226	-	hypothetical protein
2136	 64.21	0	2362637..2363002	-	121	121594572	-	Ajs_2227	-	hypothetical protein
2137	 65.66	0	2363068..2363865	-	265	121594573	-	Ajs_2228	-	hypothetical protein
2138	 66.39	0	2364156..2364872	-	238	121594574	-	Ajs_2229	-	hypothetical protein
2139	 64.63	0	2365123..2365515	-	130	121594575	-	Ajs_2230	-	hypothetical protein
2140	 64.98	0	2365541..2365777	-	78	121594576	-	Ajs_2231	-	hypothetical protein
2141	 67.96	0	2366559..2368574	-	671	121594577	-	Ajs_2233	-	DNA topoisomerase III
2142	 66.67	0	2368869..2369252	-	127	121594578	-	Ajs_2234	-	single-strand DNA-binding protein
2143	 65.58	0	2369249..2369800	-	183	121594579	-	Ajs_2235	-	hypothetical protein
2144	 68.08	0	2369797..2370576	-	259	121594580	-	Ajs_2236	-	hypothetical protein
2145	 63.54	0	2370700..2370891	-	63	121594581	-	Ajs_2237	-	hypothetical protein
2146	 68.75	0	2370920..2371207	-	95	121594582	-	Ajs_2238	-	addiction module antitoxin
2147	 67.67	0	2371194..2371493	-	99	121594583	-	Ajs_2239	-	addiction module antitoxin
2148	 59.67	-1	2372700..2375615	-	971	121594584	-	Ajs_2241	-	transposase Tn3 family protein
2149	 70.92	0	2375932..2376354	+	140	121594585	-	Ajs_2242	-	hypothetical protein
2150	 68.24	0	2376372..2378915	-	847	121594586	-	Ajs_2243	-	radical SAM domain-containing protein
2151	 71.15	0	2378955..2379623	+	222	121594587	-	Ajs_2244	-	hypothetical protein
2152	 72.47	+1	2379733..2381145	+	470	121594588	-	Ajs_2245	-	dihydrolipoamide dehydrogenase
2153	 72.06	+1	2381302..2381505	+	67	121594589	-	Ajs_2246	-	hypothetical protein
2154	 73.14	+1	2381564..2382691	-	375	121594590	-	Ajs_2247	-	FAD dependent oxidoreductase
2155	 71.95	+1	2382713..2384263	-	516	121594591	-	Ajs_2248	-	amidase
2156	 68.51	0	2384307..2385284	-	325	121594592	-	Ajs_2249	-	hypothetical protein
2157	 70.28	0	2385355..2386710	-	451	121594593	-	Ajs_2250	-	D-serine dehydratase
2158	 68.66	0	2386808..2387761	+	317	121594594	-	Ajs_2251	-	LysR family transcriptional regulator
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.