IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2027	 65.52	0	2232370..2233242	+	290	121594463	-	Ajs_2113	-	extracellular solute-binding protein
2028	 65.22	0	2233314..2234006	+	230	121594464	-	Ajs_2114	-	polar amino acid ABC transporter, inner membrane subunit
2029	 70.91	0	2234009..2234503	-	164	121594465	-	Ajs_2115	-	hypothetical protein
2030	 70.81	0	2234769..2235323	+	184	121594466	-	Ajs_2116	-	hypothetical protein
2031	 64.30	0	2235345..2235725	-	126	121594467	-	Ajs_2117	-	proline hydroxylase-like protein
2032	 65.25	0	2237225..2238427	-	400	121594468	-	Ajs_2119	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2033	 63.70	0	2238621..2239160	+	179	121594469	-	Ajs_2120	-	BadM/Rrf2 family transcriptional regulator
2034	 64.28	0	2239352..2240944	-	530	121594470	-	Ajs_2121	-	putative transposase
2035	 63.27	0	2240957..2242045	-	362	121594471	-	Ajs_2122	-	transposase, IS4 family protein
2036	 67.57	0	2242333..2244216	-	627	121594472	-	Ajs_2123	-	dihydrolipoamide dehydrogenase
2037	 67.19	0	2244233..2245936	-	567	121594473	-	Ajs_2124	-	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
2038	 64.92	0	2245956..2248652	-	898	121594474	aceE	Ajs_2125	-	pyruvate dehydrogenase subunit E1
2039	 67.26	0	2248822..2251368	+	848	121594475	-	Ajs_2126	-	multi-sensor signal transduction histidine kinase
2040	 61.88	0	2251365..2251991	+	208	121594476	-	Ajs_2127	-	two component LuxR family transcriptional regulator
2041	 64.43	0	2252070..2252918	+	282	121594477	-	Ajs_2128	-	methenyltetrahydrofolate cyclohydrolase
2042	 67.26	0	2253006..2255039	+	677	121594478	-	Ajs_2129	-	oligopeptidase A
2043	 68.65	0	2255154..2255810	+	218	121594479	-	Ajs_2130	-	glutaredoxin
2044	 65.07	0	2255861..2256550	-	229	121594480	-	Ajs_2131	-	ribose-5-phosphate isomerase A
2045	 66.67	0	2256586..2257641	+	351	121594481	-	Ajs_2132	-	dihydroorotate dehydrogenase 2
2046	 73.46	+1	2257699..2258022	-	107	121594482	-	Ajs_2133	-	hypothetical protein
2047	 64.65	0	2258019..2258414	-	131	121594483	-	Ajs_2134	-	hypothetical protein
2048	 62.73	0	2258482..2258862	-	126	121594484	-	Ajs_2135	-	protein of unknown function DUF883, ElaB
2049	 66.22	0	2258921..2260036	-	371	121594485	-	Ajs_2136	-	FAD dependent oxidoreductase
2050	 64.90	0	2260054..2261130	-	358	121594486	-	Ajs_2137	-	histone deacetylase superfamily protein
2051	 62.18	0	2261438..2262151	-	237	121594487	-	Ajs_2138	-	DNA polymerase III, epsilon subunit
2052	 61.36	-1	2262151..2262489	-	112	121594488	-	Ajs_2139	-	ferredoxin, 2Fe-2S type, ISC system
2053	 66.35	0	2262523..2264391	-	622	121594489	hscA	Ajs_2140	-	chaperone protein HscA
2054	 64.74	0	2264458..2264976	-	172	121594490	-	Ajs_2141	-	co-chaperone Hsc20
2055	 58.95	-1	2265045..2265368	-	107	121594491	-	Ajs_2142	-	iron-sulfur cluster assembly protein IscA
2056	 61.94	0	2265374..2265775	-	133	121594492	-	Ajs_2143	-	FeS cluster assembly scaffold IscU
2057	 61.92	0	2265813..2267033	-	406	121594493	-	Ajs_2144	-	cysteine desulfurase IscS
2058	 61.27	-1	2267138..2267674	-	178	121594494	-	Ajs_2145	-	BadM/Rrf2 family transcriptional regulator
2059	 64.55	0	2268368..2269594	+	408	121594495	-	Ajs_2147	-	transposase IS116/IS110/IS902 family protein
2060	 67.97	0	2269703..2270929	-	408	121594496	-	Ajs_2148	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
2061	 62.82	0	2270922..2272013	-	363	121594497	-	Ajs_2149	-	putative transposase
2062	 62.57	0	2272136..2274232	-	698	121594498	-	Ajs_2150	-	excinuclease ABC subunit B
2063	 65.33	0	2274341..2275537	+	398	121594499	-	Ajs_2151	-	aromatic amino acid aminotransferase
2064	 64.97	0	2275691..2277460	+	589	121594500	-	Ajs_2152	-	methyl-accepting chemotaxis sensory transducer
2065	 71.22	+1	2277463..2278341	+	292	121594501	-	Ajs_2153	-	L-carnitine dehydratase/bile acid-inducible protein F
2066	 66.87	0	2278349..2278843	+	164	121594502	-	Ajs_2154	-	hypothetical protein
2067	 57.81	-1	2281797..2283050	+	417	121594503	-	Ajs_2156	-	transposase, mutator type
2068	 61.13	-1	2283178..2284206	+	342	121594504	-	Ajs_2157	-	integrase catalytic subunit
2069	 60.98	-1	2284331..2284963	+	210	121594505	-	Ajs_2158	-	hypothetical protein
2070	 66.67	0	2285016..2285273	+	85	121594506	-	Ajs_2159	-	hypothetical protein
2071	 60.48	-1	2285407..2286117	+	236	121594507	-	Ajs_2160	-	methyltransferase type 11
2072	 66.16	0	2286208..2287785	+	525	121594508	-	Ajs_2161	-	beta-phosphoglucomutase family hydrolase
2073	 65.47	0	2287782..2290205	+	807	121594509	-	Ajs_2162	-	trehalose 6-phosphate phosphorylase
2074	 64.99	0	2290268..2291281	+	337	121594510	-	Ajs_2163	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
2075	 67.40	0	2291290..2293728	+	812	121594511	-	Ajs_2164	-	phosphoenolpyruvate synthase
2076	 64.27	0	2293773..2294813	+	346	121594512	-	Ajs_2165	-	glyceraldehyde-3-phosphate dehydrogenase
2077	 64.90	0	2296121..2296687	+	188	121594513	-	Ajs_2168	-	TetR family transcriptional regulator
2078	 67.34	0	2296764..2297501	-	245	121594514	-	Ajs_2169	-	LysR family transcriptional regulator
2079	 67.48	0	2297676..2298293	+	205	121594515	-	Ajs_2170	-	hypothetical protein
2080	 66.73	0	2298290..2299960	+	556	121594516	-	Ajs_2171	-	integrase catalytic subunit
2081	 65.77	0	2299957..2300853	+	298	121594517	-	Ajs_2172	-	TniB family protein
2082	 64.32	0	2300850..2302343	+	497	121594518	-	Ajs_2173	-	hypothetical protein
2083	 62.33	0	2302481..2302780	+	99	121594519	-	Ajs_2174	-	XRE family transcriptional regulator
2084	 68.29	0	2302807..2304651	-	614	121594520	-	Ajs_2175	-	relaxase
2085	 66.45	0	2304854..2305774	-	306	121594521	-	Ajs_2176	-	hypothetical protein
2086	 64.98	0	2305767..2306594	-	275	121594522	-	Ajs_2177	-	hypothetical protein
2087	 68.29	0	2306755..2307123	+	122	121594523	-	Ajs_2178	-	hypothetical protein
2088	 63.98	0	2307140..2308663	-	507	121594524	-	Ajs_2179	-	hypothetical protein
2089	 71.47	+1	2308679..2309032	-	117	121594525	-	Ajs_2180	-	hypothetical protein
2090	 68.94	0	2309029..2310435	-	468	121594526	-	Ajs_2181	-	hypothetical protein
2091	 67.30	0	2310446..2311390	-	314	121594527	-	Ajs_2182	-	hypothetical protein
2092	 71.33	+1	2311387..2311836	-	149	121594528	-	Ajs_2183	-	hypothetical protein
2093	 65.86	0	2312005..2312499	-	164	121594529	-	Ajs_2184	-	DNA repair protein RadC
2094	 70.16	0	2312695..2313438	-	247	121594530	-	Ajs_2185	-	hypothetical protein
2095	 67.95	0	2313452..2316340	-	962	121594531	-	Ajs_2186	-	hypothetical protein
2096	 72.41	+1	2316340..2316774	-	144	121594532	-	Ajs_2187	-	hypothetical protein
2097	 68.55	0	2316755..2318188	-	477	121594533	-	Ajs_2188	-	hypothetical protein
2098	 72.57	+1	2318178..2319092	-	304	121594534	-	Ajs_2189	-	hypothetical protein
2099	 68.11	0	2319089..2319781	-	230	121594535	-	Ajs_2190	-	hypothetical protein
2100	 72.51	+1	2319778..2320188	-	136	121594536	-	Ajs_2191	-	hypothetical protein
2101	 67.75	0	2320201..2320569	-	122	121594537	-	Ajs_2192	-	hypothetical protein
2102	 67.08	0	2320592..2320831	-	79	121594538	-	Ajs_2193	-	hypothetical protein
2103	 71.67	+1	2320828..2321187	-	119	121594539	-	Ajs_2194	-	hypothetical protein
2104	 57.28	-1	2321480..2321692	+	70	121594540	-	Ajs_2195	-	phage transcriptional regulator, AlpA
2105	 59.40	-1	2321702..2322802	+	366	121594541	-	Ajs_2196	-	DNA-cytosine methyltransferase
2106	 62.09	0	2322823..2323281	+	152	121594542	-	Ajs_2197	-	putative very short patch repair protein
2107	 62.46	0	2323302..2326442	+	1046	121594543	-	Ajs_2198	-	helicase domain-containing protein
2108	 63.75	0	2326439..2328979	+	846	121594544	-	Ajs_2199	-	hypothetical protein
2109	 67.97	0	2328992..2330218	-	408	121594545	-	Ajs_2200	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
2110	 59.06	-1	2330411..2331949	+	512	121594546	-	Ajs_2201	-	hypothetical protein
2111	 59.87	-1	2331946..2333901	+	651	121594547	-	Ajs_2202	-	DNA mismatch repair ATPase-like protein
2112	 63.31	0	2333914..2337933	+	1339	121594548	-	Ajs_2203	-	helicase domain-containing protein
2113	 61.77	0	2337936..2339795	+	619	121594549	-	Ajs_2204	-	hypothetical protein
2114	 59.84	-1	2339797..2340558	+	253	121594550	-	Ajs_2205	-	phospholipase D/transphosphatidylase
2115	 57.72	-1	2340610..2341302	-	230	121594551	-	Ajs_2206	-	hypothetical protein
2116	 67.47	0	2341585..2342334	-	249	121594552	-	Ajs_2207	-	hypothetical protein
2117	 67.45	0	2342331..2344487	-	718	121594553	-	Ajs_2208	-	hypothetical protein
2118	 72.66	+1	2344496..2345029	-	177	121594554	-	Ajs_2209	-	hypothetical protein
2119	 73.11	+1	2345026..2345646	-	206	121594555	-	Ajs_2210	-	lytic transglycosylase, catalytic
2120	 73.33	+1	2345631..2346350	-	239	121594556	-	Ajs_2211	-	putative secreted protein
2121	 70.22	0	2346437..2347084	-	215	121594557	-	Ajs_2212	-	hypothetical protein
2122	 69.28	0	2347081..2347692	-	203	121594558	-	Ajs_2213	-	hypothetical protein
2123	 56.09	-2	2348050..2348361	+	103	121594559	-	Ajs_2214	-	hypothetical protein
2124	 58.88	-1	2348354..2349265	+	303	121594560	-	Ajs_2215	-	hypothetical protein
2125	 60.98	-1	2349262..2349507	+	81	121594561	-	Ajs_2216	-	hypothetical protein
2126	 58.39	-1	2349504..2351267	+	587	121594562	-	Ajs_2217	-	hypothetical protein
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.