IslandPathversion 1.0

IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.47 STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1921	 67.26	0	2102694..2103875	-	393	121594357	-	Ajs_2001	-	tryptophan synthase subunit beta
1922	 67.96	0	2104126..2104512	+	128	121594358	-	Ajs_2002	-	hypothetical protein
1923	 41.83	-2	2104939..2106291	-	450	121594359	-	Ajs_2003	-	hypothetical protein
1924	 57.70	-1	2106468..2107448	-	326	121594360	-	Ajs_2004	-	transposase, IS4 family protein
1925	 66.44	0	2108119..2109006	-	295	121594361	-	Ajs_2005	-	3-hydroxyisobutyrate dehydrogenase
1926	 71.60	+1	2109099..2109503	-	134	121594362	-	Ajs_2006	-	hypothetical protein
1927	 68.04	0	2109573..2110739	-	388	121594363	-	Ajs_2007	-	acyl-CoA dehydrogenase domain-containing protein
1928	 72.03	+1	2110767..2111195	-	142	121594364	-	Ajs_2008	-	hypothetical protein
1929	 66.80	0	2111234..2112757	-	507	121594365	-	Ajs_2009	-	methylmalonate-semialdehyde dehydrogenase [acylating]
1930	 68.86	0	2112914..2113825	+	303	121594366	-	Ajs_2010	-	LysR family transcriptional regulator
1931	 61.83	0	2113895..2114287	-	130	121594367	-	Ajs_2011	-	hypothetical protein
1932	 67.51	0	2114302..2114775	+	157	121594368	-	Ajs_2012	-	CBS domain-containing protein
1933	 62.26	0	2114832..2114990	-	52	121594369	-	Ajs_2013	-	hypothetical protein
1934	 69.44	0	2115344..2116534	+	396	121594370	-	Ajs_2014	-	glucose sorbosone dehydrogenase
1935	 68.13	0	2116689..2117303	+	204	121594371	-	Ajs_2015	-	isochorismatase hydrolase
1936	 68.62	0	2117524..2119419	+	631	121594372	-	Ajs_2016	-	propionyl-CoA synthetase
1937	 70.62	0	2119508..2123407	-	1299	121594373	-	Ajs_2017	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
1938	 72.10	+1	2123626..2124564	-	312	121594374	-	Ajs_2018	-	hypothetical protein
1939	 72.50	+1	2124561..2125109	-	182	121594375	-	Ajs_2019	-	methylated-DNA--protein-cysteine methyltransferase
1940	 72.46	+1	2125170..2126723	-	517	121594376	-	Ajs_2020	-	DNA-O6-methylguanine--protein-cysteine S-methyltransferase / DNA-3-methyladenine glycosylase II / transcriptional regulator Ada
1941	 68.39	0	2126920..2128308	+	462	121594377	-	Ajs_2021	-	phosphomannomutase
1942	 72.32	+1	2128329..2129690	+	453	121594378	-	Ajs_2022	-	3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein
1943	 69.31	0	2129795..2132521	+	908	121594379	-	Ajs_2023	-	GCN5-related N-acetyltransferase
1944	 66.67	0	2132528..2132881	+	117	121594380	-	Ajs_2024	-	hypothetical protein
1945	 68.38	0	2132926..2133507	+	193	121594381	-	Ajs_2025	-	deaminase-reductase domain-containing protein
1946	 71.26	+1	2133591..2134808	-	405	121594382	-	Ajs_2026	-	TolC family type I secretion outer membrane protein
1947	 70.80	0	2134994..2135332	-	112	121594383	-	Ajs_2027	-	rhodanese domain-containing protein
1948	 68.92	0	2135364..2136074	-	236	121594384	-	Ajs_2028	-	methyltransferase type 11
1949	 65.61	0	2136122..2136784	-	220	121594385	-	Ajs_2029	-	TetR family transcriptional regulator
1950	 66.12	0	2136915..2137460	+	181	121594386	-	Ajs_2030	-	peptide methionine sulfoxide reductase
1951	 66.67	0	2137613..2137852	+	79	121594387	-	Ajs_2031	-	hypothetical protein
1952	 75.80	+1	2137878..2138282	+	134	121594388	-	Ajs_2032	-	hypothetical protein
1953	 71.22	+1	2138459..2140546	+	695	121594389	-	Ajs_2033	-	TonB-dependent receptor
1954	 72.05	+1	2140960..2141832	+	290	121594390	-	Ajs_2034	-	hypothetical protein
1955	 74.35	+1	2141969..2143192	+	407	121594391	-	Ajs_2035	-	chromate transporter
1956	 71.52	+1	2143257..2143709	-	150	121594392	-	Ajs_2036	-	AsnC family transcriptional regulator
1957	 70.09	0	2143847..2145016	+	389	121594393	-	Ajs_2037	-	saccharopine dehydrogenase
1958	 69.51	0	2145017..2146846	-	609	121594394	-	Ajs_2038	-	AMP-dependent synthetase and ligase
1959	 66.98	0	2147015..2147650	-	211	121594395	-	Ajs_2039	-	GntR family transcriptional regulator
1960	 64.68	0	2147775..2149937	+	720	121594396	-	Ajs_2040	-	methylmalonyl-CoA mutase
1961	 68.12	0	2149997..2150962	+	321	121594397	-	Ajs_2041	-	arginine/ornithine transport system ATPase
1962	 63.80	0	2150988..2152520	+	510	121594398	-	Ajs_2042	-	carboxyl transferase
1963	 64.96	0	2152542..2154590	+	682	121594399	-	Ajs_2043	-	carbamoyl-phosphate synthase L chain, ATP-binding
1964	 63.42	0	2154650..2155111	+	153	121594400	-	Ajs_2044	-	lactoylglutathione lyase
1965	 63.25	0	2155477..2156529	+	350	121594401	-	Ajs_2045	-	biotin synthase
1966	 64.14	0	2156795..2157586	+	263	121594402	-	Ajs_2046	-	short-chain dehydrogenase/reductase SDR
1967	 62.59	0	2157649..2158065	+	138	121594403	-	Ajs_2047	-	lactoylglutathione lyase
1968	 70.22	0	2158135..2158782	-	215	121594404	-	Ajs_2048	-	2-keto-3-deoxy-phosphogluconate aldolase
1969	 69.58	0	2158773..2160590	-	605	121594405	-	Ajs_2049	-	phosphogluconate dehydratase
1970	 64.19	0	2160751..2161761	-	336	121594406	-	Ajs_2050	-	TRAP dicarboxylate transporter, DctP subunit
1971	 66.20	0	2161806..2163086	-	426	121594407	-	Ajs_2051	-	TRAP dicarboxylate transporter, DctM subunit
1972	 67.43	0	2163095..2163616	-	173	121594408	-	Ajs_2052	-	tripartite ATP-independent periplasmic transporter DctQ
1973	 67.94	0	2163613..2164161	-	182	121594409	-	Ajs_2053	-	carbohydrate kinase
1974	 71.25	+1	2164377..2165402	+	341	121594410	-	Ajs_2054	-	LacI family transcription regulator
1975	 69.63	0	2165586..2166125	-	179	121594411	-	Ajs_2055	-	OmpA/MotB domain-containing protein
1976	 70.20	0	2166188..2166781	+	197	121594412	-	Ajs_2056	-	ChaC family protein
1977	 71.59	+1	2166815..2167342	+	175	121594413	-	Ajs_2057	-	superoxide dismutase, copper/zinc binding
1978	 69.42	0	2167381..2168034	+	217	121594414	-	Ajs_2058	-	pyridoxamine 5'-phosphate oxidase
1979	 69.58	0	2168079..2169107	-	342	121594415	-	Ajs_2059	-	auxin efflux carrier
1980	 68.94	0	2169267..2170322	+	351	121594416	-	Ajs_2060	-	tRNA-dihydrouridine synthase A
1981	 69.22	0	2170312..2173014	-	900	121594417	-	Ajs_2061	-	diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s)
1982	 64.71	0	2173184..2174254	+	356	121594418	-	Ajs_2062	-	RelA/SpoT domain-containing protein
1983	 65.52	0	2174424..2175731	+	435	121594419	-	Ajs_2063	-	polyhydroxyalkanoate depolymerase, intracellular
1984	 73.55	+1	2175740..2176393	+	217	121594420	-	Ajs_2064	-	electron transport complex, RnfABCDGE type, B subunit
1985	 69.01	0	2176476..2178140	-	554	121594421	-	Ajs_2065	-	methyl-accepting chemotaxis sensory transducer
1986	 66.83	0	2178160..2179374	+	404	121594422	-	Ajs_2066	-	hypothetical protein
1987	 66.55	0	2179371..2180195	+	274	121594423	dapD	Ajs_2067	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
1988	 65.46	0	2180252..2181415	+	387	121594424	-	Ajs_2068	-	twitching motility protein
1989	 67.77	0	2181459..2182634	+	391	121594425	-	Ajs_2069	-	succinyl-diaminopimelate desuccinylase
1990	 70.11	0	2182631..2183560	+	309	121594426	-	Ajs_2070	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
1991	 66.77	0	2183607..2185577	+	656	121594427	-	Ajs_2071	-	ABC transporter related
1992	 63.28	0	2186026..2186763	-	245	121594428	fabG	Ajs_2072	-	3-ketoacyl-(acyl-carrier-protein) reductase
1993	 68.53	0	2187009..2188187	-	392	121594429	-	Ajs_2073	-	acetyl-CoA acetyltransferase
1994	 65.78	0	2188329..2190128	-	599	121594430	-	Ajs_2074	-	poly(R)-hydroxyalkanoic acid synthase, class I
1995	 68.73	0	2190201..2190491	+	96	121594431	-	Ajs_2075	-	hypothetical protein
1996	 71.38	+1	2190408..2191235	-	275	121594432	-	Ajs_2076	-	hypothetical protein
1997	 68.31	0	2191265..2191933	-	222	121594433	-	Ajs_2077	-	maleylacetoacetate isomerase
1998	 69.68	0	2192052..2192747	+	231	121594434	-	Ajs_2078	-	fumarylacetoacetate (FAA) hydrolase
1999	 65.94	0	2192819..2193367	+	182	121594435	-	Ajs_2079	-	NUDIX hydrolase
2000	 69.33	0	2193360..2194562	-	400	121594436	-	Ajs_2080	-	major facilitator superfamily transporter
2001	 71.04	0	2194578..2197118	-	846	121594437	-	Ajs_2081	-	glycosyl transferase family protein
2002	 70.98	0	2197365..2198315	-	316	121594438	-	Ajs_2082	-	patatin
2003	 70.40	0	2198316..2200511	-	731	121594439	-	Ajs_2083	-	DNA ligase, NAD-dependent
2004	 65.87	0	2200523..2200897	-	124	121594440	-	Ajs_2084	-	hypothetical protein
2005	 72.35	+1	2200906..2202048	-	380	121594441	-	Ajs_2085	-	ZipA, C-terminal FtsZ-binding region
2006	 69.28	0	2202062..2205586	-	1174	121594442	-	Ajs_2086	-	chromosome segregation protein SMC
2007	 70.57	0	2205761..2206093	-	110	121594443	-	Ajs_2087	-	hypothetical protein
2008	 68.58	0	2206129..2209272	-	1047	121594444	-	Ajs_2088	-	diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s)
2009	 68.51	0	2209472..2211313	+	613	121594445	-	Ajs_2089	-	ABC transporter related
2010	 68.48	0	2211434..2212870	-	478	121594446	-	Ajs_2090	-	major facilitator superfamily transporter
2011	 65.80	0	2213174..2213752	+	192	121594447	-	Ajs_2091	-	NLP/P60 protein
2012	 64.38	0	2213887..2214366	+	159	121594448	-	Ajs_2092	-	hypothetical protein
2013	 70.16	0	2214559..2215446	-	295	121594449	-	Ajs_2093	-	6-phosphogluconate dehydrogenase, NAD-binding
2014	 69.17	0	2215510..2216469	-	319	121594450	-	Ajs_2094	-	hypothetical protein
2015	 67.94	0	2216595..2216909	+	104	121594451	-	Ajs_2095	-	hypothetical protein
2016	 67.91	0	2217044..2218894	-	616	121594452	-	Ajs_2096	-	dihydrolipoamide dehydrogenase
2017	 66.76	0	2219061..2220113	-	350	121594453	-	Ajs_2098	-	alcohol dehydrogenase
2018	 62.96	0	2220252..2221142	-	296	121594454	-	Ajs_2099	-	putative signal peptide
2019	 62.02	0	2221236..2221988	-	250	121594455	-	Ajs_2100	-	short-chain dehydrogenase/reductase SDR
2020	 67.39	0	2222166..2223407	+	413	121594456	-	Ajs_2101	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
66.47	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.